Spaces:
Runtime error
Runtime error
Commit
·
573ab4f
1
Parent(s):
8071a09
Update app.py
Browse files
app.py
CHANGED
|
@@ -27,8 +27,8 @@ def read_mol(molpath):
|
|
| 27 |
|
| 28 |
def molecule(input_pdb):
|
| 29 |
|
| 30 |
-
|
| 31 |
-
|
| 32 |
x ="""<!DOCTYPE html>
|
| 33 |
<html lang="en">
|
| 34 |
<head>
|
|
@@ -53,15 +53,14 @@ def molecule(input_pdb):
|
|
| 53 |
}
|
| 54 |
#myViewer{
|
| 55 |
float:left;
|
| 56 |
-
width:
|
| 57 |
-
height:
|
| 58 |
position:relative;
|
| 59 |
}
|
| 60 |
</style>
|
| 61 |
</head>
|
| 62 |
|
| 63 |
<body>
|
| 64 |
-
<h4>PDBe Mol* AlphaFold Demo</h4>
|
| 65 |
<div class="viewerSection">
|
| 66 |
<!-- Molstar container -->
|
| 67 |
<div id="myViewer"></div>
|
|
@@ -75,8 +74,8 @@ def molecule(input_pdb):
|
|
| 75 |
//Set options (Checkout available options list in the documentation)
|
| 76 |
var options = {
|
| 77 |
customData: {
|
| 78 |
-
url: "
|
| 79 |
-
format: "
|
| 80 |
},
|
| 81 |
alphafoldView: true,
|
| 82 |
bgColor: {r:255, g:255, b:255},
|
|
@@ -101,13 +100,12 @@ def molecule(input_pdb):
|
|
| 101 |
allowpaymentrequest="" frameborder="0" srcdoc='{x}'></iframe>"""
|
| 102 |
|
| 103 |
|
| 104 |
-
def update(inp, file,
|
| 105 |
pdb_path = get_pdb(inp, file)
|
| 106 |
-
print("
|
| 107 |
-
|
| 108 |
-
return molecule(pdb_path)
|
| 109 |
-
|
| 110 |
|
|
|
|
| 111 |
demo = gr.Blocks()
|
| 112 |
|
| 113 |
with demo:
|
|
@@ -123,5 +121,5 @@ with demo:
|
|
| 123 |
gr.Examples(["2CBA", "6VXX"], inp)
|
| 124 |
btn = gr.Button("View structure")
|
| 125 |
mol = gr.HTML()
|
| 126 |
-
btn.click(fn=update, inputs=[inp, file], outputs=mol)
|
| 127 |
-
demo.launch()
|
|
|
|
| 27 |
|
| 28 |
def molecule(input_pdb):
|
| 29 |
|
| 30 |
+
print(input_pdb)
|
| 31 |
+
print(public_link+'/file='+os.path.basename(input_pdb))
|
| 32 |
x ="""<!DOCTYPE html>
|
| 33 |
<html lang="en">
|
| 34 |
<head>
|
|
|
|
| 53 |
}
|
| 54 |
#myViewer{
|
| 55 |
float:left;
|
| 56 |
+
width:100%;
|
| 57 |
+
height: 600px;
|
| 58 |
position:relative;
|
| 59 |
}
|
| 60 |
</style>
|
| 61 |
</head>
|
| 62 |
|
| 63 |
<body>
|
|
|
|
| 64 |
<div class="viewerSection">
|
| 65 |
<!-- Molstar container -->
|
| 66 |
<div id="myViewer"></div>
|
|
|
|
| 74 |
//Set options (Checkout available options list in the documentation)
|
| 75 |
var options = {
|
| 76 |
customData: {
|
| 77 |
+
url: "{public_link+'/file='+os.path.basename(input_pdb)}",
|
| 78 |
+
format: "pdb"
|
| 79 |
},
|
| 80 |
alphafoldView: true,
|
| 81 |
bgColor: {r:255, g:255, b:255},
|
|
|
|
| 100 |
allowpaymentrequest="" frameborder="0" srcdoc='{x}'></iframe>"""
|
| 101 |
|
| 102 |
|
| 103 |
+
def update(inp, file, public_link):
|
| 104 |
pdb_path = get_pdb(inp, file)
|
| 105 |
+
print("public link", public_link)
|
| 106 |
+
return molecule(pdb_path, public_link)
|
|
|
|
|
|
|
| 107 |
|
| 108 |
+
public_link = ""
|
| 109 |
demo = gr.Blocks()
|
| 110 |
|
| 111 |
with demo:
|
|
|
|
| 121 |
gr.Examples(["2CBA", "6VXX"], inp)
|
| 122 |
btn = gr.Button("View structure")
|
| 123 |
mol = gr.HTML()
|
| 124 |
+
btn.click(fn=update, inputs=[inp, file, public_link], outputs=mol)
|
| 125 |
+
_, _, public_link = demo.launch()
|