Simon Duerr commited on
Commit
3817115
·
1 Parent(s): 0605e17

remove py3dmol

Browse files
Files changed (1) hide show
  1. app.py +2 -1
app.py CHANGED
@@ -10,6 +10,7 @@ if not os.path.isfile("RF2_apr23.pt"):
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  if not os.path.isdir("RoseTTAFold2"):
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  print("install RoseTTAFold2")
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  os.system("git clone https://github.com/sokrypton/RoseTTAFold2.git")
 
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  os.system(
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  "cd RoseTTAFold2/SE3Transformer; pip -q install --no-cache-dir -r requirements.txt; pip -q install ."
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  )
@@ -23,6 +24,7 @@ if not os.path.isdir("RoseTTAFold2"):
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  os.system(
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  f"curl -fsSL https://github.com/soedinglab/hh-suite/releases/download/v3.3.0/hhsuite-3.3.0-SSE2-Linux.tar.gz | tar xz -C hhsuite/"
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  )
 
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  if os.path.isfile(f"RF2_apr23.pt.aria2"):
@@ -39,7 +41,6 @@ import matplotlib.pyplot as plt
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  import numpy as np
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  from parsers import parse_a3m
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  from api import run_mmseqs2
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- import py3Dmol
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  import torch
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  from string import ascii_uppercase, ascii_lowercase
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  import hashlib, re, os
 
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  if not os.path.isdir("RoseTTAFold2"):
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  print("install RoseTTAFold2")
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  os.system("git clone https://github.com/sokrypton/RoseTTAFold2.git")
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+ print(os.listdir("RoseTTAFold2"))
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  os.system(
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  "cd RoseTTAFold2/SE3Transformer; pip -q install --no-cache-dir -r requirements.txt; pip -q install ."
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  )
 
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  os.system(
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  f"curl -fsSL https://github.com/soedinglab/hh-suite/releases/download/v3.3.0/hhsuite-3.3.0-SSE2-Linux.tar.gz | tar xz -C hhsuite/"
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  )
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+ print(os.listdir("hhsuite"))
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  if os.path.isfile(f"RF2_apr23.pt.aria2"):
 
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  import numpy as np
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  from parsers import parse_a3m
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  from api import run_mmseqs2
 
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  import torch
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  from string import ascii_uppercase, ascii_lowercase
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  import hashlib, re, os