import numpy as np import gradio as gr from sklearn.datasets import make_checkerboard from sklearn.cluster import SpectralBiclustering from sklearn.metrics import consensus_score import plotly.express as px score = [0.0] def dataset(n_cluster_rows, n_cluster_cols, noise=5, n_rows=300, n_cols=300): data, rows, columns = make_checkerboard( shape=(n_rows, n_cols), n_clusters=(n_cluster_rows, n_cluster_cols), noise=noise, shuffle=False, random_state=0, ) fig = px.imshow(data, title="Original Data") return fig def shuffle_dataset(n_cluster_rows, n_cluster_cols, noise=5, n_rows=300, n_cols=300): data, rows, columns = make_checkerboard( shape=(n_rows, n_cols), n_clusters=(n_cluster_rows, n_cluster_cols), noise=noise, shuffle=False, random_state=0, ) rng = np.random.RandomState(0) row_idx = rng.permutation(data.shape[0]) col_idx = rng.permutation(data.shape[1]) data = data[row_idx][:, col_idx] fig = px.imshow(data, title="Shuffled Data") return fig def model_fit( n_cluster_rows, n_cluster_cols, noise, n_rows, n_cols, n_cluster_rows_, n_cluster_cols_, svd_method, ): data, rows, columns = make_checkerboard( shape=(n_rows, n_cols), n_clusters=(n_cluster_rows, n_cluster_cols), noise=noise, shuffle=False, random_state=0, ) fig_original = px.imshow(data, title="Original Data") rng = np.random.RandomState(0) row_idx = rng.permutation(data.shape[0]) col_idx = rng.permutation(data.shape[1]) data = data[row_idx][:, col_idx] fig_shuffled = px.imshow(data, title="Shuffled Data") model = SpectralBiclustering( n_clusters=(n_cluster_rows_, n_cluster_cols_), method="log", random_state=0, svd_method=svd_method, ) model.fit(data) score.append( consensus_score(model.biclusters_, (rows[:, row_idx], columns[:, col_idx])) ) fit_data = data[np.argsort(model.row_labels_)] fit_data = fit_data[:, np.argsort(model.column_labels_)].T fig = px.imshow(fit_data, title="After Bi-Clustering") fig_1 = px.imshow( np.outer(np.sort(model.row_labels_) + 1, np.sort(model.column_labels_) + 1), title="Checkerboard structure of rearranged data", ) return fig_original, fig_shuffled, fig, fig_1 def get_score(): return score[-1].__format__(".3f") with gr.Blocks() as demo: gr.Markdown("## Spectral Bi-Clustering") gr.Markdown( "Demo is based on the [Spectral Bi-Clustering](https://scikit-learn.org/stable/auto_examples/bicluster/plot_spectral_coclustering.html) example from scikit-learn. The goal of co-clustering is to find subgroups of rows and columns that are highly correlated. The data is first shuffled, then the rows and columns are reordered to match the biclusters. The consensus score is a measure of how well the biclusters found by the model match the true biclusters. The score is between 0 and 1, with 1 being a perfect match." ) with gr.Tab("Data"): gr.Markdown("## Play with the parameters to see how the data changes") gr.Markdown("### Parameters") with gr.Row(): n_rows = gr.Slider(1, 500, label="Number of Rows", value=300, step=1) n_cols = gr.Slider(1, 500, label="Number of Columns", value=300, step=1) n_cluster_rows = gr.Slider( 1, 50, label="Number of Clusters Rows", value=5, step=1 ) n_cluster_cols = gr.Slider( 1, 50, label="Number of Clusters Columns", value=5, step=1 ) noise = gr.Slider(0, 10, label="Noise", value=5, step=1) with gr.Row(): gen_btn = gr.Button("Generate Data") shu_btn = gr.Button("Shuffle Data") with gr.Row(): gen_btn.click( fn=dataset, inputs=[n_cluster_rows, n_cluster_cols, noise, n_rows, n_cols], outputs=gr.Plot(), ) shu_btn.click( fn=shuffle_dataset, inputs=[n_cluster_rows, n_cluster_cols, noise, n_rows, n_cols], outputs=gr.Plot(), ) with gr.Tab("Model"): gr.Markdown("## Model") gr.Markdown("### Data Parameters") with gr.Row(): n_rows = gr.Slider(1, 500, label="Number of Rows", value=300, step=1) n_cols = gr.Slider(1, 500, label="Number of Columns", value=300, step=1) n_cluster_rows = gr.Slider( 1, 50, label="Number of Clusters Rows", value=5, step=1 ) n_cluster_cols = gr.Slider( 1, 50, label="Number of Clusters Columns", value=5, step=1 ) noise = gr.Slider(0, 10, label="Noise", value=5, step=1) gr.Markdown("### Model Parameters") with gr.Row(): n_cluster_rows_ = gr.Slider( 1, 50, label="Number of Clusters Rows", value=5, step=1 ) n_cluster_cols_ = gr.Slider( 1, 50, label="Number of Clusters Columns", value=5, step=1 ) svd_method = gr.Dropdown( ["randomized", "arpack"], label="SVD Method", value="randomized" ) model_btn = gr.Button("Fit Model") with gr.Row(): model_btn.click( fn=model_fit, inputs=[ n_cluster_rows, n_cluster_cols, noise, n_rows, n_cols, n_cluster_rows_, n_cluster_cols_, svd_method, ], outputs=[gr.Plot(), gr.Plot(), gr.Plot(), gr.Plot()], ) gr.Markdown("### Consensus Score") score_btn = gr.Button("Get Score") with gr.Row(): score_btn.click(fn=get_score, outputs=gr.Text()) demo.launch()