Spaces:
Running
Running
Daniel Foley
commited on
Commit
·
48ae0fa
1
Parent(s):
ae94932
added n workers parallelism to metadata fetching
Browse files
RAG.py
CHANGED
@@ -12,49 +12,8 @@ from langchain_core.documents import Document
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from langchain_community.retrievers import BM25Retriever
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import requests
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from typing import Dict, Any, Optional, List, Tuple
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import json
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import logging
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import logging
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from datetime import datetime
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from io import StringIO
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class RunLogger:
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def __init__(self, script_name='streamlit_script'):
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# Create string buffer to store logs
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self.log_buffer = StringIO()
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# Create logger
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self.logger = logging.getLogger(script_name)
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self.logger.setLevel(logging.INFO)
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# Create handler that writes to our string buffer
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handler = logging.StreamHandler(self.log_buffer)
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formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
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handler.setFormatter(formatter)
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self.logger.addHandler(handler)
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self.logger.info("=== Starting new run ===")
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def info(self, message):
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self.logger.info(message)
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def error(self, message):
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self.logger.error(message)
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def warning(self, message):
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self.logger.warning(message)
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def output_logs(self):
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"""Print all collected logs"""
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print("\n=== Run Complete - All Logs ===")
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print(self.log_buffer.getvalue())
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print("=== End Logs ===\n")
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def __del__(self):
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"""Ensure logs are output if logger is garbage collected"""
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self.output_logs()
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def retrieve(query: str,vectorstore:PineconeVectorStore, k: int = 100) -> Tuple[List[Document], List[float]]:
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start = time.time()
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@@ -80,7 +39,6 @@ def retrieve(query: str,vectorstore:PineconeVectorStore, k: int = 100) -> Tuple[
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def safe_get_json(url: str) -> Optional[Dict]:
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"""Safely fetch and parse JSON from a URL."""
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print("Fetching JSON")
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try:
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response = requests.get(url, timeout=10)
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response.raise_for_status()
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@@ -89,42 +47,52 @@ def safe_get_json(url: str) -> Optional[Dict]:
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logging.error(f"Error fetching from {url}: {str(e)}")
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return None
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def
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"""
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if not
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return
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# Handle direct text fields
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text_fields = ["title_info_primary_tsi","abstract_tsi","subject_geographic_sim","genre_basic_ssim","genre_specific_ssim","date_tsim"]
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for field in text_fields:
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if field in json_data['data']['attributes'] and json_data['data']['attributes'][field]:
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# print(json_data[field])
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text_parts.append(str(json_data['data']['attributes'][field]))
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start = time.time()
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if not documents:
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return []
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full_docs = []
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meta_start = time.time()
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logging.info(f"Took {time.time()-meta_start} seconds to retrieve all metadata")
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# If no valid documents were processed, return empty list
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if not full_docs:
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return []
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@@ -133,7 +101,7 @@ def rerank(documents: List[Document], query: str) -> List[Document]:
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reranker = BM25Retriever.from_documents(full_docs, k=min(10, len(full_docs)))
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reranked_docs = reranker.invoke(query)
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logging.info(f"Finished reranking: {time.time()-start}")
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return
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def parse_xml_and_query(query:str,xml_string:str) -> str:
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"""parse xml and return rephrased query"""
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from langchain_community.retrievers import BM25Retriever
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import requests
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from typing import Dict, Any, Optional, List, Tuple
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import logging
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import concurrent.futures
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def retrieve(query: str,vectorstore:PineconeVectorStore, k: int = 100) -> Tuple[List[Document], List[float]]:
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start = time.time()
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def safe_get_json(url: str) -> Optional[Dict]:
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"""Safely fetch and parse JSON from a URL."""
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try:
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response = requests.get(url, timeout=10)
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response.raise_for_status()
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logging.error(f"Error fetching from {url}: {str(e)}")
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return None
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def process_single_document(doc: Document) -> Optional[Document]:
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"""Process a single document by fetching and extracting metadata."""
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if not doc.metadata.get('source'):
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return None
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url = f"https://www.digitalcommonwealth.org/search/{doc.metadata['source']}"
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json_data = safe_get_json(f"{url}.json")
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if json_data:
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text_content = extract_text_from_json(json_data)
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if text_content:
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return Document(
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page_content=text_content,
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metadata={
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"source": doc.metadata['source'],
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"field": doc.metadata['field'],
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"URL": url
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}
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)
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return None
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def rerank(documents: List[Document], query: str, max_workers: int = 2) -> List[Document]:
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"""Ingest more metadata and rerank documents using BM25 with parallel processing."""
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start = time.time()
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if not documents:
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return []
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meta_start = time.time()
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full_docs = []
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# Process documents in parallel using ThreadPoolExecutor
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with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
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# Submit all document processing tasks
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future_to_doc = {
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executor.submit(process_single_document, doc): doc
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for doc in documents
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}
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# Collect results as they complete
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for future in concurrent.futures.as_completed(future_to_doc):
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processed_doc = future.result()
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if processed_doc:
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full_docs.append(processed_doc)
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logging.info(f"Took {time.time()-meta_start} seconds to retrieve all metadata")
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# If no valid documents were processed, return empty list
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if not full_docs:
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return []
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reranker = BM25Retriever.from_documents(full_docs, k=min(10, len(full_docs)))
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reranked_docs = reranker.invoke(query)
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logging.info(f"Finished reranking: {time.time()-start}")
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return full_docs
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def parse_xml_and_query(query:str,xml_string:str) -> str:
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"""parse xml and return rephrased query"""
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