diff --git "a/data/SNP_CRISPR/SNP_CRISPR_NAG.csv" "b/data/SNP_CRISPR/SNP_CRISPR_NAG.csv" new file mode 100755--- /dev/null +++ "b/data/SNP_CRISPR/SNP_CRISPR_NAG.csv" @@ -0,0 +1,1269 @@ +"Gene","Chr","Variant","Wild-type Design","Wild-type Off Target Score","Wild-type Efficiency Score","Variant Design","Variant Off Target Score","Variant Efficiency Score","Start","End","Strand","Variant Position","Distance to PAM" +"rs10052649","5","T>A","AGAAAATTAAATCTCCAAtATAG","0","5.77","AGAAAATTAAATCTCCAAaATAG","0","5.85","60859139","60859161","+","60859157","1" +"rs1005451","19","A>G","CCCCAACAGTAaGAAAGGCCCAG","0","5.66","CCCCAACAGTAgGAAAGGCCCAG","0","5.64","45148832","45148810","-","45148821","8" +"rs1005451","19","A>G","TTCAACCCCCAACAGTAaGAAAG","0","6.06","TTCAACCCCCAACAGTAgGAAAG","0","6.01","45148838","45148816","-","45148821","2" +"rs10415983","19","C>G","ATCGcTCATACCTGTAATCTCAG","0","3.61","ATCGgTCATACCTGTAATCTCAG","0","3.80","45208336","45208358","+","45208340","15" 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rs2965169","19","A>C","CAGGGCCCCCAACGaGTGCAGAG","0","7.14","CAGGGCCCCCAACGcGTGCAGAG","0","7.68","44747885","44747907","+","44747899","5" +"BCL3 rs2965169","19","A>C","AACGaGTGCAGAGACACAATCAG","0","5.00","AACGcGTGCAGAGACACAATCAG","0","5.25","44747895","44747917","+","44747899","15" +"BCL3 rs8103315","19","C>A","CAGTCcCTGGGGTCCCCTGCTAG","0","5.76","CAGTCaCTGGGGTCCCCTGCTAG","0","5.44","44750906","44750928","+","44750911","14" +"BCL3 rs8103315","19","G>T","GACCCCAGgGACTGTCTGCAGAG","0","5.00","GACCCCAGtGACTGTCTGCAGAG","0","4.04","44750919","44750897","-","44750911","11" +"BCL3 rs8103315","19","G>T","GGGACCCCAGgGACTGTCTGCAG","0","4.56","GGGACCCCAGtGACTGTCTGCAG","0","4.47","44750921","44750899","-","44750911","9" +"BIN1 rs1060743","2","A>G","TGGCaGTTTGAAGGGACTCGTAG","0","5.57","TGGCgGTTTGAAGGGACTCGTAG","0","6.01","127068953","127068975","+","127068957","15" +"BIN1 rs1060743","2","T>C","AACtGCCAAAAAGAAGGATGAAG","0","5.63","AACcGCCAAAAAGAAGGATGAAG","0","5.52","127068960","127068938","-","127068957","16" +"BIN1 rs1060743","2","T>C","CCCTTCAAACtGCCAAAAAGAAG","0","5.71","CCCTTCAAACcGCCAAAAAGAAG","0","5.56","127068967","127068945","-","127068957","9" +"BIN1 rs1060743","2","T>C","AGTCCCTTCAAACtGCCAAAAAG","0","7.16","AGTCCCTTCAAACcGCCAAAAAG","0","5.38","127068970","127068948","-","127068957","6" +"BIN1 rs10929006","2","C>G","GGCAGAGGTTGcGGTGAGCCGAG","0","5.02","GGCAGAGGTTGgGGTGAGCCGAG","0","4.82","127086596","127086574","-","127086585","8" +"BIN1 rs10929006","2","C>T","GGCAGAGGTTGcGGTGAGCCGAG","0","5.02","GGCAGAGGTTGtGGTGAGCCGAG","0","5.21","127086596","127086574","-","127086585","8" +"BIN1 rs10929006","2","C>G","GGGGAGGCAGAGGTTGcGGTGAG","0","7.11","GGGGAGGCAGAGGTTGgGGTGAG","0","6.89","127086601","127086579","-","127086585","3" +"BIN1 rs10929006","2","C>T","GGGGAGGCAGAGGTTGcGGTGAG","0","7.11","GGGGAGGCAGAGGTTGtGGTGAG","0","7.12","127086601","127086579","-","127086585","3" +"BIN1 rs11693422","2","A>G","TTTCaGCGTTCCCTCATGCTCAG","0","6.47","TTTCgGCGTTCCCTCATGCTCAG","0","6.92","127084582","127084604","+","127084586","15" +"BIN1 rs11693422","2","A>G","TCaGCGTTCCCTCATGCTCAGAG","0","5.86","TCgGCGTTCCCTCATGCTCAGAG","0","6.05","127084584","127084606","+","127084586","17" +"BIN1 rs11693422","2","T>C","CtGAAATGCCTAAGAGCAATGAG","0","6.08","CcGAAATGCCTAAGAGCAATGAG","0","5.98","127084587","127084565","-","127084586","18" +"BIN1 rs11693422","2","T>C","GGGAACGCtGAAATGCCTAAGAG","0","6.99","GGGAACGCcGAAATGCCTAAGAG","0","7.11","127084594","127084572","-","127084586","11" +"BIN1 rs11693422","2","T>C","GAGGGAACGCtGAAATGCCTAAG","0","6.54","GAGGGAACGCcGAAATGCCTAAG","0","6.39","127084596","127084574","-","127084586","9" +"BIN1 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rs35568738","19","C>G","CACCTGTAGTCCCAGGTAcTAAG","0","5.03","CACCTGTAGTCCCAGGTAgTAAG","0","4.94","44899479","44899457","-","44899461","1" +"TOMM40 rs35568738","19","C>T","CACCTGTAGTCCCAGGTAcTAAG","0","5.03","CACCTGTAGTCCCAGGTAtTAAG","0","5.10","44899479","44899457","-","44899461","1" +"TOMM40 rs59007384","19","G>A","CAGGgTTGGGGGGACTGAATGAG","0","6.13","CAGGaTTGGGGGGACTGAATGAG","0","5.69","44893404","44893426","+","44893408","15" +"TOMM40 rs59007384","19","G>T","CAGGgTTGGGGGGACTGAATGAG","0","6.13","CAGGtTTGGGGGGACTGAATGAG","0","5.87","44893404","44893426","+","44893408","15" +"TOMM40 rs59007384","19","C>T","CCCAAcCCTGTCTGGGCCTCCAG","0","4.58","CCCAAtCCTGTCTGGGCCTCCAG","0","4.23","44893413","44893391","-","44893408","14" +"TOMM40 rs59007384","19","C>A","CCCAAcCCTGTCTGGGCCTCCAG","0","4.58","CCCAAaCCTGTCTGGGCCTCCAG","0","4.26","44893413","44893391","-","44893408","14" +"TOMM40 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rs3098199","15","C>A","ACTCCATGCTTTCTTTcCTTCAG","0","6.06","ACTCCATGCTTTCTTTaCTTCAG","0","5.54","50529045","50529067","+","50529061","3" +"USP50 rs3098199","15","G>T","CCTGAAGgAAAGAAAGCATGGAG","0","5.26","CCTGAAGtAAAGAAAGCATGGAG","0","5.29","50529068","50529046","-","50529061","12" +"USP50 rs3098199","15","G>T","AAGATTTCCTGAAGgAAAGAAAG","0","3.56","AAGATTTCCTGAAGtAAAGAAAG","0","3.00","50529075","50529053","-","50529061","5" +"USP50 rs3098199","15","G>T","AATAAAGATTTCCTGAAGgAAAG","0","5.88","AATAAAGATTTCCTGAAGtAAAG","0","6.04","50529079","50529057","-","50529061","1" \ No newline at end of file