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{ | |
"task": { | |
"id": "bac_16S_phylogeny", | |
"display_name": "16S Bacterial Phylogeny", | |
"description": "Evaluate on 16S Bacterial phylogeny distance correlation task.", | |
"modality": "dna", | |
"type": "eds", | |
"datasets": [ | |
{ | |
"path": "tattabio/bac_16S_sequences", | |
"revision": "efde1456b86748909cbcfecb07d783756d570aa3" | |
}, | |
{ | |
"path": "tattabio/bac_16S_distances", | |
"revision": "5c8ba5dfa600bb930d34af2fbc2b17f0acab62d3" | |
} | |
], | |
"primary_metric_id": "top_corr" | |
}, | |
"model": { | |
"hf_name": "InstaDeepAI/nucleotide-transformer-2.5b-multi-species", | |
"revision": "...", | |
"num_layers": 32, | |
"num_params": 2547801226, | |
"embed_dim": 2560 | |
}, | |
"dgeb_version": "0.0.0", | |
"results": [ | |
{ | |
"layer_number": 16, | |
"layer_display_name": "16", | |
"metrics": [ | |
{ | |
"id": "cos_sim", | |
"display_name": "cos_sim", | |
"description": null, | |
"value": 0.3034936215778572 | |
}, | |
{ | |
"id": "manhattan", | |
"display_name": "manhattan", | |
"description": null, | |
"value": 0.30766902257663337 | |
}, | |
{ | |
"id": "euclidean", | |
"display_name": "euclidean", | |
"description": null, | |
"value": 0.311140752313069 | |
}, | |
{ | |
"id": "top_corr", | |
"display_name": "top_corr", | |
"description": null, | |
"value": 0.311140752313069 | |
} | |
] | |
}, | |
{ | |
"layer_number": 31, | |
"layer_display_name": "31", | |
"metrics": [ | |
{ | |
"id": "cos_sim", | |
"display_name": "cos_sim", | |
"description": null, | |
"value": 0.23391355792374574 | |
}, | |
{ | |
"id": "manhattan", | |
"display_name": "manhattan", | |
"description": null, | |
"value": 0.23593114226208475 | |
}, | |
{ | |
"id": "euclidean", | |
"display_name": "euclidean", | |
"description": null, | |
"value": 0.22752660313351064 | |
}, | |
{ | |
"id": "top_corr", | |
"display_name": "top_corr", | |
"description": null, | |
"value": 0.23593114226208475 | |
} | |
] | |
} | |
] | |
} | |