instal dependencies before coping and executing app staff

Dockerfile

@@ -15,6 +15,19 @@
 # Adds rstudio server, tiyverse, devtools to rocker/cuda
 FROM rocker/ml:4.2
 
+RUN echo "--> Prior installations" \ 
+    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys A4B469963BF863CC \
+    set -e; \
+    apt-get update --fix-missing \
+    && apt-get install -y \
+    python3-pip wget bzip2 curl \
+    git sudo libarchive-dev libtiff5-dev zsh\
+    #python3 -m pip install --upgrade pip \
+    python3-venv libxt-dev \
+    && apt-get clean  \
+    && rm -rf /var/lib/apt/lists/* 
+
+
 SHELL [ "/bin/bash", "--login", "-c" ]
 
 ###############
@@ -58,24 +71,12 @@ COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app $HOME/app
 COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} $HOME/data/
 COPY --chown=${USER_ID}:${GROUP_ID} ../dvats ${HOME}/dvats
 
-RUN echo "--> Prior installations" \ 
-    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys A4B469963BF863CC \
-    set -e; \
-    apt-get update --fix-missing \
-    && apt-get install -y \
-    python3-pip wget bzip2 curl \
-    git sudo libarchive-dev libtiff5-dev zsh\
-    #python3 -m pip install --upgrade pip \
-    python3-venv libxt-dev \
-    && apt-get clean  \
-    && rm -rf /var/lib/apt/lists/* 
 
 ## Install R packages
 
 #COPY docker/DESCRIPTION /tmp/
 COPY --chown=${USER_ID}:${GROUP_ID} docker/DESCRIPTION /tmp/
 
-RUN ls -la /tmp/ && sleep 5
 
 RUN echo "--> Install R packages"
 
@@ -204,6 +205,7 @@ RUN echo "---> Setup variables" && \
     done > ${HOME}/.Renviron
 
 
+RUN pip install -e  /home/${USER_NAME}/work
 RUN echo "--> Go!"
 
 CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=${RSTUDIO_PORT:-3838}, launch.browser = FALSE, appDir = '/home/${USER_NAME}/app')"]