volumenes cargados en imagen intermedia

Dockerfile

@@ -13,59 +13,13 @@
 # Base image #
 ##############
 # Adds rstudio server, tiyverse, devtools to rocker/cuda
-FROM misantamaria/dvats-rstudio:rocker-ml4.2
+FROM misantamaria/dvats-rstudio-ghf:latest
 
 SHELL [ "/bin/bash", "--login", "-c" ]
 
-###############
-# Ensure vars #
-###############
-RUN mkdir /var/run/s6
-
-
-RUN echo "--> ARGS"
-ARG USER_NAME=user \
-    USER_ID=1000 \
-    GROUP_ID \
-    WANDB_ENTITY \
-    WANDB_PROJECT
-
-
-RUN echo "--> ARGS -> ENV"
-ENV USER_NAME=$USER_NAME \
-    USER_ID=$USER_ID \
-    GROUP_ID=$GROUP_ID \
-    WANDB_ENTITY=$WANDB_ENTITY \
-    WANDB_PROJECT=$WANDB_PROJECT
-
-RUN echo "--> Setup ENV variables"
-#ENV RETICULATE_PYTHON_ENV=/home/env \
-ENV ROOT=TRUE \
-    #RETICULATE_MINICONDA_PATH=/home/miniconda3 \
-     #1,2,3... En la barata solo tienes 1 :)
-    CUDA_VISIBLE_DEVICES=0\
-    ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES\
-    HOME="/home"
-
-
-### Copy deepvats
-RUN echo "---> Setup volumes" 
-
-#ENV APPDIR='/home/'${USER_NAME}'/app'
-ENV APPDIR='/home/app'
-ENV DATADIR=$HOME'/data/'
-ENV DVATSDIR=$HOME'/dvats/'
-
-#--- Volumes
-COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app $APPDIR
-COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} $DATADIR
-COPY --chown=${USER_ID}:${GROUP_ID} ../dvats $DVATSDIR
-
-
 #RUN chown ${USER_ID}:${GROUP_ID} /home/.config/matplotlib
 #RUN chown ${USER_ID}:${GROUP_ID} $MPLCONFIGDIR
 
-
 RUN  chown ${USER_ID}:${GROUP_ID} /var/run/s6
 RUN  chown ${USER_ID}:${GROUP_ID} /home/
 # Install deepvats

Dockerfile.med

@@ -0,0 +1,44 @@
+FROM misantamaria/dvats-rstudio:rocker-ml4.2
+#Permissions
+RUN mkdir /var/run/s6
+###############
+# Ensure vars #
+###############
+
+RUN echo "--> ARGS"
+ARG USER_NAME=user \
+    USER_ID=1000 \
+    GROUP_ID \
+    WANDB_ENTITY \
+    WANDB_PROJECT
+
+
+RUN echo "--> ARGS -> ENV"
+ENV USER_NAME=$USER_NAME \
+    USER_ID=$USER_ID \
+    GROUP_ID=$GROUP_ID \
+    WANDB_ENTITY=$WANDB_ENTITY \
+    WANDB_PROJECT=$WANDB_PROJECT
+
+RUN echo "--> Setup ENV variables"
+#ENV RETICULATE_PYTHON_ENV=/home/env \
+ENV ROOT=TRUE \
+    #RETICULATE_MINICONDA_PATH=/home/miniconda3 \
+     #1,2,3... En la barata solo tienes 1 :)
+    CUDA_VISIBLE_DEVICES=0\
+    ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES\
+    HOME="/home"
+
+
+### Copy deepvats
+RUN echo "---> Setup volumes" 
+
+#ENV APPDIR='/home/'${USER_NAME}'/app'
+ENV APPDIR='/home/app'
+ENV DATADIR=$HOME'/data/'
+ENV DVATSDIR=$HOME'/dvats/'
+
+#--- Volumes
+COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app $APPDIR
+COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} $DATADIR
+COPY --chown=${USER_ID}:${GROUP_ID} ../dvats $DVATSDIR

local_build_docker_med.sh

@@ -0,0 +1,13 @@
+# Inicializa un array vacío
+args=()
+
+# Lee el archivo .env línea por línea
+while IFS='=' read -r key value; do
+    if [[ $key != \#* && $key != '' ]]; then  # Excluye comentarios y líneas vacías
+        args+=(--build-arg "$key=$value")  # Agrega --build-arg y la variable como un elemento
+    fi
+done < .env
+
+# Ejecuta docker build con los argumentos
+IMAGE_NAME='dvats-rstudio-ghf:latest'
+docker build "${args[@]}" . -f Dockerfile.med -t ${IMAGE_NAME}