import numpy as np import os import re import datetime import arxiv import openai, tenacity import base64, requests import argparse import configparser import fitz, io, os from PIL import Image import gradio import markdown class Paper: def __init__(self, path, title='', url='', abs='', authers=[], sl=[]): # 初始化函数，根据pdf路径初始化Paper对象 self.url = url # 文章链接 self.path = path # pdf路径 self.sl = sl self.section_names = [] # 段落标题 self.section_texts = {} # 段落内容 if title == '': self.pdf = fitz.open(self.path) # pdf文档 self.title = self.get_title() self.parse_pdf() else: self.title = title self.authers = authers self.abs = abs self.roman_num = ["I", "II", 'III', "IV", "V", "VI", "VII", "VIII", "IIX", "IX", "X"] self.digit_num = [str(d+1) for d in range(10)] self.first_image = '' def parse_pdf(self): self.pdf = fitz.open(self.path) # pdf文档 self.text_list = [page.get_text() for page in self.pdf] self.all_text = ' '.join(self.text_list) self.section_page_dict = self._get_all_page_index() # 段落与页码的对应字典 print("section_page_dict", self.section_page_dict) self.section_text_dict = self._get_all_page() # 段落与内容的对应字典 self.section_text_dict.update({"title": self.title}) self.pdf.close() def get_image_path(self, image_path=''): """ 将PDF中的第一张图保存到image.png里面，存到本地目录，返回文件名称，供gitee读取 :param filename: 图片所在路径，"C:\\Users\\Administrator\\Desktop\\nwd.pdf" :param image_path: 图片提取后的保存路径 :return: """ # open file max_size = 0 image_list = [] with fitz.Document(self.path) as my_pdf_file: # 遍历所有页面 for page_number in range(1, len(my_pdf_file) + 1): # 查看独立页面 page = my_pdf_file[page_number - 1] # 查看当前页所有图片 images = page.get_images() # 遍历当前页面所有图片 for image_number, image in enumerate(page.get_images(), start=1): # 访问图片xref xref_value = image[0] # 提取图片信息 base_image = my_pdf_file.extract_image(xref_value) # 访问图片 image_bytes = base_image["image"] # 获取图片扩展名 ext = base_image["ext"] # 加载图片 image = Image.open(io.BytesIO(image_bytes)) image_size = image.size[0] * image.size[1] if image_size > max_size: max_size = image_size image_list.append(image) for image in image_list: image_size = image.size[0] * image.size[1] if image_size == max_size: image_name = f"image.{ext}" im_path = os.path.join(image_path, image_name) print("im_path:", im_path) max_pix = 480 origin_min_pix = min(image.size[0], image.size[1]) if image.size[0] > image.size[1]: min_pix = int(image.size[1] * (max_pix/image.size[0])) newsize = (max_pix, min_pix) else: min_pix = int(image.size[0] * (max_pix/image.size[1])) newsize = (min_pix, max_pix) image = image.resize(newsize) image.save(open(im_path, "wb")) return im_path, ext return None, None # 定义一个函数，根据字体的大小，识别每个章节名称，并返回一个列表 def get_chapter_names(self,): # # 打开一个pdf文件 doc = fitz.open(self.path) # pdf文档 text_list = [page.get_text() for page in doc] all_text = '' for text in text_list: all_text += text # # 创建一个空列表，用于存储章节名称 chapter_names = [] for line in all_text.split('\n'): line_list = line.split(' ') if '.' in line: point_split_list = line.split('.') space_split_list = line.split(' ') if 1 < len(space_split_list) < 5: if 1 < len(point_split_list) < 5 and (point_split_list[0] in self.roman_num or point_split_list[0] in self.digit_num): print("line:", line) chapter_names.append(line) return chapter_names def get_title(self): doc = self.pdf # 打开pdf文件 max_font_size = 0 # 初始化最大字体大小为0 max_string = "" # 初始化最大字体大小对应的字符串为空 max_font_sizes = [0] for page in doc: # 遍历每一页 text = page.get_text("dict") # 获取页面上的文本信息 blocks = text["blocks"] # 获取文本块列表 for block in blocks: # 遍历每个文本块 if block["type"] == 0: # 如果是文字类型 font_size = block["lines"][0]["spans"][0]["size"] # 获取第一行第一段文字的字体大小 max_font_sizes.append(font_size) if font_size > max_font_size: # 如果字体大小大于当前最大值 max_font_size = font_size # 更新最大值 max_string = block["lines"][0]["spans"][0]["text"] # 更新最大值对应的字符串 max_font_sizes.sort() print("max_font_sizes", max_font_sizes[-10:]) cur_title = '' for page in doc: # 遍历每一页 text = page.get_text("dict") # 获取页面上的文本信息 blocks = text["blocks"] # 获取文本块列表 for block in blocks: # 遍历每个文本块 if block["type"] == 0: # 如果是文字类型 cur_string = block["lines"][0]["spans"][0]["text"] # 更新最大值对应的字符串 font_flags = block["lines"][0]["spans"][0]["flags"] # 获取第一行第一段文字的字体特征 font_size = block["lines"][0]["spans"][0]["size"] # 获取第一行第一段文字的字体大小 # print(font_size) if abs(font_size - max_font_sizes[-1]) < 0.3 or abs(font_size - max_font_sizes[-2]) < 0.3: # print("The string is bold.", max_string, "font_size:", font_size, "font_flags:", font_flags) if len(cur_string) > 4 and "arXiv" not in cur_string: # print("The string is bold.", max_string, "font_size:", font_size, "font_flags:", font_flags) if cur_title == '' : cur_title += cur_string else: cur_title += ' ' + cur_string # break title = cur_title.replace('\n', ' ') return title def _get_all_page_index(self): # 定义需要寻找的章节名称列表 section_list = self.sl # 初始化一个字典来存储找到的章节和它们在文档中出现的页码 section_page_dict = {} # 遍历每一页文档 for page_index, page in enumerate(self.pdf): # 获取当前页面的文本内容 cur_text = page.get_text() # 遍历需要寻找的章节名称列表 for section_name in section_list: # 将章节名称转换成大写形式 section_name_upper = section_name.upper() # 如果当前页面包含"Abstract"这个关键词 if "Abstract" == section_name and section_name in cur_text: # 将"Abstract"和它所在的页码加入字典中 section_page_dict[section_name] = page_index # 如果当前页面包含章节名称，则将章节名称和它所在的页码加入字典中 else: if section_name + '\n' in cur_text: section_page_dict[section_name] = page_index elif section_name_upper + '\n' in cur_text: section_page_dict[section_name] = page_index # 返回所有找到的章节名称及它们在文档中出现的页码 return section_page_dict def _get_all_page(self): """ 获取PDF文件中每个页面的文本信息，并将文本信息按照章节组织成字典返回。 Returns: section_dict (dict): 每个章节的文本信息字典，key为章节名，value为章节文本。 """ text = '' text_list = [] section_dict = {} # # 先处理Abstract章节 # for page_index, page in enumerate(self.pdf): # cur_text = page.get_text() # # 如果该页面是Abstract章节所在页面 # if page_index == list(self.section_page_dict.values())[0]: # abs_str = "Abstract" # # 获取Abstract章节的起始位置 # first_index = cur_text.find(abs_str) # # 查找下一个章节的关键词，这里是Introduction # intro_str = "Introduction" # if intro_str in cur_text: # second_index = cur_text.find(intro_str) # elif intro_str.upper() in cur_text: # second_index = cur_text.find(intro_str.upper()) # # 将Abstract章节内容加入字典中 # section_dict[abs_str] = cur_text[first_index+len(abs_str)+1:second_index].replace('-\n', # '').replace('\n', ' ').split('I.')[0].split("II.")[0] # 再处理其他章节： text_list = [page.get_text() for page in self.pdf] for sec_index, sec_name in enumerate(self.section_page_dict): print(sec_index, sec_name, self.section_page_dict[sec_name]) if sec_index <= 0: continue else: # 直接考虑后面的内容： start_page = self.section_page_dict[sec_name] if sec_index < len(list(self.section_page_dict.keys()))-1: end_page = self.section_page_dict[list(self.section_page_dict.keys())[sec_index+1]] else: end_page = len(text_list) print("start_page, end_page:", start_page, end_page) cur_sec_text = '' if end_page - start_page == 0: if sec_index < len(list(self.section_page_dict.keys()))-1: next_sec = list(self.section_page_dict.keys())[sec_index+1] if text_list[start_page].find(sec_name) == -1: start_i = text_list[start_page].find(sec_name.upper()) else: start_i = text_list[start_page].find(sec_name) if text_list[start_page].find(next_sec) == -1: end_i = text_list[start_page].find(next_sec.upper()) else: end_i = text_list[start_page].find(next_sec) cur_sec_text += text_list[start_page][start_i:end_i] else: for page_i in range(start_page, end_page): # print("page_i:", page_i) if page_i == start_page: if text_list[start_page].find(sec_name) == -1: start_i = text_list[start_page].find(sec_name.upper()) else: start_i = text_list[start_page].find(sec_name) cur_sec_text += text_list[page_i][start_i:] elif page_i < end_page: cur_sec_text += text_list[page_i] elif page_i == end_page: if sec_index < len(list(self.section_page_dict.keys()))-1: next_sec = list(self.section_page_dict.keys())[sec_index+1] if text_list[start_page].find(next_sec) == -1: end_i = text_list[start_page].find(next_sec.upper()) else: end_i = text_list[start_page].find(next_sec) cur_sec_text += text_list[page_i][:end_i] section_dict[sec_name] = cur_sec_text.replace('-\n', '').replace('\n', ' ') return section_dict # 定义Reader类 class Reader: # 初始化方法，设置属性 def __init__(self, key_word='', query='', filter_keys='', root_path='./', gitee_key='', sort=arxiv.SortCriterion.SubmittedDate, user_name='defualt', language='cn', key=''): self.key = str(key) # OpenAI key self.user_name = user_name # 读者姓名 self.key_word = key_word # 读者感兴趣的关键词 self.query = query # 读者输入的搜索查询 self.sort = sort # 读者选择的排序方式 self.language = language # 读者选择的语言 self.filter_keys = filter_keys # 用于在摘要中筛选的关键词 self.root_path = root_path self.file_format = 'md' # or 'txt'，如果为图片，则必须为'md' self.save_image = False if self.save_image: self.gitee_key = self.config.get('Gitee', 'api') else: self.gitee_key = '' def get_arxiv(self, max_results=30): search = arxiv.Search(query=self.query, max_results=max_results, sort_by=self.sort, sort_order=arxiv.SortOrder.Descending, ) return search def filter_arxiv(self, max_results=30): search = self.get_arxiv(max_results=max_results) print("all search:") for index, result in enumerate(search.results()): print(index, result.title, result.updated) filter_results = [] filter_keys = self.filter_keys print("filter_keys:", self.filter_keys) # 确保每个关键词都能在摘要中找到，才算是目标论文 for index, result in enumerate(search.results()): abs_text = result.summary.replace('-\n', '-').replace('\n', ' ') meet_num = 0 for f_key in filter_keys.split(" "): if f_key.lower() in abs_text.lower(): meet_num += 1 if meet_num == len(filter_keys.split(" ")): filter_results.append(result) # break print("filter_results:", len(filter_results)) print("filter_papers:") for index, result in enumerate(filter_results): print(index, result.title, result.updated) return filter_results def validateTitle(self, title): # 将论文的乱七八糟的路径格式修正 rstr = r"[\/\\\:\*\?\"\<\>\|]" # '/ \ : * ? " < > |' new_title = re.sub(rstr, "_", title) # 替换为下划线 return new_title def download_pdf(self, filter_results): # 先创建文件夹 date_str = str(datetime.datetime.now())[:13].replace(' ', '-') key_word = str(self.key_word.replace(':', ' ')) path = self.root_path + 'pdf_files/' + self.query.replace('au: ', '').replace('title: ', '').replace('ti: ', '').replace(':', ' ')[:25] + '-' + date_str try: os.makedirs(path) except: pass print("All_paper:", len(filter_results)) # 开始下载： paper_list = [] for r_index, result in enumerate(filter_results): try: title_str = self.validateTitle(result.title) pdf_name = title_str+'.pdf' # result.download_pdf(path, filename=pdf_name) self.try_download_pdf(result, path, pdf_name) paper_path = os.path.join(path, pdf_name) print("paper_path:", paper_path) paper = Paper(path=paper_path, url=result.entry_id, title=result.title, abs=result.summary.replace('-\n', '-').replace('\n', ' '), authers=[str(aut) for aut in result.authors], ) # 下载完毕，开始解析： paper.parse_pdf() paper_list.append(paper) except Exception as e: print("download_error:", e) pass return paper_list @tenacity.retry(wait=tenacity.wait_exponential(multiplier=1, min=4, max=10), stop=tenacity.stop_after_attempt(5), reraise=True) def try_download_pdf(self, result, path, pdf_name): result.download_pdf(path, filename=pdf_name) @tenacity.retry(wait=tenacity.wait_exponential(multiplier=1, min=4, max=10), stop=tenacity.stop_after_attempt(5), reraise=True) def upload_gitee(self, image_path, image_name='', ext='png'): """ 上传到码云 :return: """ with open(image_path, 'rb') as f: base64_data = base64.b64encode(f.read()) base64_content = base64_data.decode() date_str = str(datetime.datetime.now())[:19].replace(':', '-').replace(' ', '-') + '.' + ext path = image_name+ '-' +date_str payload = { "access_token": self.gitee_key, "owner": self.config.get('Gitee', 'owner'), "repo": self.config.get('Gitee', 'repo'), "path": self.config.get('Gitee', 'path'), "content": base64_content, "message": "upload image" } # 这里需要修改成你的gitee的账户和仓库名，以及文件夹的名字： url = f'https://gitee.com/api/v5/repos/'+self.config.get('Gitee', 'owner')+'/'+self.config.get('Gitee', 'repo')+'/contents/'+self.config.get('Gitee', 'path')+'/'+path rep = requests.post(url, json=payload).json() print("rep:", rep) if 'content' in rep.keys(): image_url = rep['content']['download_url'] else: image_url = r"https://gitee.com/api/v5/repos/"+self.config.get('Gitee', 'owner')+'/'+self.config.get('Gitee', 'repo')+'/contents/'+self.config.get('Gitee', 'path')+'/' + path return image_url def summary_with_chat(self, paper_list, key): htmls = [] for paper_index, paper in enumerate(paper_list): # 第一步先用title，abs，和introduction进行总结。 text = '' text += 'Title:' + paper.title text += 'Url:' + paper.url text += 'Abstrat:' + paper.abs # intro text += list(paper.section_text_dict.values())[0] max_token = 2500 * 4 text = text[:max_token] chat_summary_text = self.chat_summary(text=text, key=str(key)) htmls.append(chat_summary_text) # TODO 往md文档中插入论文里的像素最大的一张图片，这个方案可以弄的更加智能一些： first_image, ext = paper.get_image_path() if first_image is None or self.gitee_key == '': pass else: image_title = self.validateTitle(paper.title) image_url = self.upload_gitee(image_path=first_image, image_name=image_title, ext=ext) htmls.append("\n") htmls.append("![Fig]("+image_url+")") htmls.append("\n") # 第二步总结方法： # TODO，由于有些文章的方法章节名是算法名，所以简单的通过关键词来筛选，很难获取，后面需要用其他的方案去优化。 method_key = '' for parse_key in paper.section_text_dict.keys(): if 'method' in parse_key.lower() or 'approach' in parse_key.lower(): method_key = parse_key break if method_key != '': text = '' method_text = '' summary_text = '' summary_text += "" + chat_summary_text # methods method_text += paper.section_text_dict[method_key] # TODO 把这个变成tenacity的自动判别！ max_token = 2500 * 4 text = summary_text + "\n :\n" + method_text text = text[:max_token] chat_method_text = self.chat_method(text=text, key=str(key)) htmls.append(chat_method_text) else: chat_method_text = '' htmls.append("\n") # 第三步总结全文，并打分： conclusion_key = '' for parse_key in paper.section_text_dict.keys(): if 'conclu' in parse_key.lower(): conclusion_key = parse_key break text = '' conclusion_text = '' summary_text = '' summary_text += "" + chat_summary_text + "\n :\n" + chat_method_text if conclusion_key != '': # conclusion conclusion_text += paper.section_text_dict[conclusion_key] max_token = 2500 * 4 text = summary_text + "\n :\n" + conclusion_text else: text = summary_text text = text[:max_token] chat_conclusion_text = self.chat_conclusion(text=text, key=str(key)) htmls.append(chat_conclusion_text) htmls.append("\n") md_text = "\n".join(htmls) return markdown.markdown(md_text) @tenacity.retry(wait=tenacity.wait_exponential(multiplier=1, min=4, max=10), stop=tenacity.stop_after_attempt(5), reraise=True) def chat_conclusion(self, text, key): openai.api_key = key response = openai.ChatCompletion.create( model="gpt-3.5-turbo", # prompt需要用英语替换，少占用token。 messages=[ {"role": "system", "content": "你是一个["+self.key_word+"]领域的审稿人，你需要严格评审这篇文章"}, # chatgpt 角色 {"role": "assistant", "content": "这是一篇英文文献的和部分内容，其中你已经总结好了，但是部分，我需要你帮忙归纳下面问题："+text}, # 背景知识，可以参考OpenReview的审稿流程 {"role": "user", "content": """ 8. 做出如下总结： - (1):这篇工作的意义如何？ - (2):从创新点、性能、工作量这三个维度，总结这篇文章的优点和缺点。 ....... 按照后面的格式输出: 8. Conclusion: - (1):xxx; - (2):创新点: xxx; 性能: xxx; 工作量: xxx; 务必使用中文回答（专有名词需要用英文标注)，语句尽量简洁且学术，不要和之前的内容重复，数值使用原文数字, 务必严格按照格式，将对应内容输出到xxx中，.......代表按照实际需求填写，如果没有可以不用写. """}, ] ) result = '' for choice in response.choices: result += choice.message.content print("conclusion_result:\n", result) return result @tenacity.retry(wait=tenacity.wait_exponential(multiplier=1, min=4, max=10), stop=tenacity.stop_after_attempt(5), reraise=True) def chat_method(self, text, key): openai.api_key = key response = openai.ChatCompletion.create( model="gpt-3.5-turbo", messages=[ {"role": "system", "content": "你是一个["+self.key_word+"]领域的科研人员，善于使用精炼的语句总结论文"}, # chatgpt 角色 {"role": "assistant", "content": "这是一篇英文文献的和部分内容，其中你已经总结好了，但是部分，我需要你帮忙阅读并归纳下面问题："+text}, # 背景知识 {"role": "user", "content": """ 7. 详细描述这篇文章的方法思路。比如说它的步骤是： - (1):... - (2):... - (3):... - ....... 按照后面的格式输出: 7. Methods: - (1):xxx; - (2):xxx; - (3):xxx; ....... 务必使用中文回答（专有名词需要用英文标注)，语句尽量简洁且学术，不要和之前的内容重复，数值使用原文数字, 务必严格按照格式，将对应内容输出到xxx中，按照\n换行，.......代表按照实际需求填写，如果没有可以不用写. """}, ] ) result = '' for choice in response.choices: result += choice.message.content print("method_result:\n", result) return result @tenacity.retry(wait=tenacity.wait_exponential(multiplier=1, min=4, max=10), stop=tenacity.stop_after_attempt(5), reraise=True) def chat_summary(self, text, key): openai.api_key = key response = openai.ChatCompletion.create( model="gpt-3.5-turbo", messages=[ {"role": "system", "content": "你是一个["+self.key_word+"]领域的科研人员，善于使用精炼的语句总结论文"}, # chatgpt 角色 {"role": "assistant", "content": "这是一篇英文文献的标题，作者，链接，Abstract和Introduction部分内容，我需要你帮忙阅读并归纳下面问题："+text}, # 背景知识 {"role": "user", "content": """ 1. 标记出这篇文献的标题(加上中文翻译) 2. 列举所有的作者姓名 (使用英文) 3. 标记第一作者的单位（只输出中文翻译） 4. 标记出这篇文章的关键词(使用英文) 5. 论文链接，Github代码链接（如果有的话，没有的话请填写Github:None） 6. 按照下面四个点进行总结： - (1):这篇文章的研究背景是什么？ - (2):过去的方法有哪些？它们存在什么问题？本文和过去的研究有哪些本质的区别？Is the approach well motivated? - (3):本文提出的研究方法是什么？ - (4):本文方法在什么任务上，取得了什么性能？性能能否支持他们的目标？ 按照后面的格式输出: 1. Title: xxx 2. Authors: xxx 3. Affiliation: xxx 4. Keywords: xxx 5. Urls: xxx or xxx , xxx 6. Summary: - (1):xxx; - (2):xxx; - (3):xxx; - (4):xxx. 务必使用中文回答（专有名词需要用英文标注)，语句尽量简洁且学术，不要有太多重复的信息，数值使用原文数字, 务必严格按照格式，将对应内容输出到xxx中，按照\n换行. """}, ] ) result = '' for choice in response.choices: result += choice.message.content print("summary_result:\n", result) return result def export_to_markdown(self, text, file_name, mode='w'): # 使用markdown模块的convert方法，将文本转换为html格式 # html = markdown.markdown(text) # 打开一个文件，以写入模式 with open(file_name, mode, encoding="utf-8") as f: # 将html格式的内容写入文件 f.write(text) # 定义一个方法，打印出读者信息 def show_info(self): print(f"Key word: {self.key_word}") print(f"Query: {self.query}") print(f"Sort: {self.sort}") def upload_pdf(key, text, file): # 检查两个输入都不为空 if not key or not text or not file: return "两个输入都不能为空，请输入字符并上传 PDF 文件！" # 判断PDF文件 if file and file.name.split(".")[-1].lower() != "pdf": return '请勿上传非 PDF 文件！' else: section_list = text.split(',') paper_list = [Paper(path=file, sl=section_list)] # 创建一个Reader对象 reader = Reader() sum_info = reader.summary_with_chat(paper_list=paper_list, key=key) return sum_info # 标题 title = "ChatPaper" # 描述 description = '''
Use ChatGPT to summary the papers.Star our Github [ChatPaper](https://github.com/kaixindelele/ChatPaper) . 💗如果您觉得我们的项目对您有帮助，还请您给我们一些鼓励！💗 🔴请注意：千万不要用于严肃的学术场景，只能用于论文阅读前的初筛！
''' # 创建Gradio界面 ip = [ gradio.inputs.Textbox(label="请输入你的API-key(必填)", default=""), gradio.inputs.Textbox(label="请输入论文大标题索引(用英文逗号隔开,必填)", default="'Abstract,Introduction,Related Work,Background,Preliminary,Problem Formulation,Methods,Methodology,Method,Approach,Approaches,Materials and Methods,Experiment Settings,Experiment,Experimental Results,Evaluation,Experiments,Results,Findings,Data Analysis,Discussion,Results and Discussion,Conclusion,References'"), gradio.inputs.File(label="请上传论文PDF(必填)") ] interface = gradio.Interface(fn=upload_pdf, inputs=ip, outputs="html", title=title, description=description) # 运行Gradio应用程序 interface.launch()