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@@ -3,6 +3,8 @@ license: mit
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  tags:
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  - single-cell
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  - biology
 
 
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  ---
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  # scGPT
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  scGPT is A foundation model for single-cell biology based on a generative pre trained transformer across a repository of over 33 million cells.
@@ -41,6 +43,11 @@ first_embed = model(tokenized_data[0][0],
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  attention_mask=mask)
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  ```
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  # TDC Citation
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  ```
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  @inproceedings{
@@ -53,11 +60,7 @@ url={https://openreview.net/forum?id=kL8dlYp6IM}
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  }
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  ```
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  # Additional Citations
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-
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  - Cui, H., Wang, C., Maan, H. et al. scGPT: toward building a foundation model for single-cell multi-omics using generative AI. Nat Methods 21, 1470–1480 (2024). https://doi.org/10.1038/s41592-024-02201-0
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- # Model Homepage
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- https://huggingface.co/MohamedMabrouk/scGPT
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-
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  # Model Github
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  https://github.com/bowang-lab/scGPT
 
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  tags:
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  - single-cell
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  - biology
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+ base_model:
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+ - MohamedMabrouk/scGPT
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  ---
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  # scGPT
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  scGPT is A foundation model for single-cell biology based on a generative pre trained transformer across a repository of over 33 million cells.
 
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  attention_mask=mask)
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  ```
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+ # TDC.scGPT Source Code
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+ https://github.com/mims-harvard/TDC/blob/main/tdc/model_server/models/scgpt.py
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+ * hf migration code available upon request
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+ * weights extracted from base model
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+
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  # TDC Citation
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  ```
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  @inproceedings{
 
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  }
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  ```
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  # Additional Citations
 
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  - Cui, H., Wang, C., Maan, H. et al. scGPT: toward building a foundation model for single-cell multi-omics using generative AI. Nat Methods 21, 1470–1480 (2024). https://doi.org/10.1038/s41592-024-02201-0
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  # Model Github
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  https://github.com/bowang-lab/scGPT