add model
Browse files- config.json +423 -0
- pytorch_model.bin +3 -0
config.json
ADDED
@@ -0,0 +1,423 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"_name_or_path": "tner_ckpt/bionlp2004_roberta_large/best_model",
|
3 |
+
"architectures": [
|
4 |
+
"RobertaForTokenClassification"
|
5 |
+
],
|
6 |
+
"attention_probs_dropout_prob": 0.1,
|
7 |
+
"bos_token_id": 0,
|
8 |
+
"classifier_dropout": null,
|
9 |
+
"crf_state_dict": {
|
10 |
+
"_constraint_mask": [
|
11 |
+
[
|
12 |
+
1.0,
|
13 |
+
1.0,
|
14 |
+
0.0,
|
15 |
+
1.0,
|
16 |
+
0.0,
|
17 |
+
1.0,
|
18 |
+
0.0,
|
19 |
+
1.0,
|
20 |
+
0.0,
|
21 |
+
1.0,
|
22 |
+
0.0,
|
23 |
+
0.0,
|
24 |
+
1.0
|
25 |
+
],
|
26 |
+
[
|
27 |
+
1.0,
|
28 |
+
1.0,
|
29 |
+
1.0,
|
30 |
+
1.0,
|
31 |
+
0.0,
|
32 |
+
1.0,
|
33 |
+
0.0,
|
34 |
+
1.0,
|
35 |
+
0.0,
|
36 |
+
1.0,
|
37 |
+
0.0,
|
38 |
+
0.0,
|
39 |
+
1.0
|
40 |
+
],
|
41 |
+
[
|
42 |
+
1.0,
|
43 |
+
1.0,
|
44 |
+
1.0,
|
45 |
+
1.0,
|
46 |
+
0.0,
|
47 |
+
1.0,
|
48 |
+
0.0,
|
49 |
+
1.0,
|
50 |
+
0.0,
|
51 |
+
1.0,
|
52 |
+
0.0,
|
53 |
+
0.0,
|
54 |
+
1.0
|
55 |
+
],
|
56 |
+
[
|
57 |
+
1.0,
|
58 |
+
1.0,
|
59 |
+
0.0,
|
60 |
+
1.0,
|
61 |
+
1.0,
|
62 |
+
1.0,
|
63 |
+
0.0,
|
64 |
+
1.0,
|
65 |
+
0.0,
|
66 |
+
1.0,
|
67 |
+
0.0,
|
68 |
+
0.0,
|
69 |
+
1.0
|
70 |
+
],
|
71 |
+
[
|
72 |
+
1.0,
|
73 |
+
1.0,
|
74 |
+
0.0,
|
75 |
+
1.0,
|
76 |
+
1.0,
|
77 |
+
1.0,
|
78 |
+
0.0,
|
79 |
+
1.0,
|
80 |
+
0.0,
|
81 |
+
1.0,
|
82 |
+
0.0,
|
83 |
+
0.0,
|
84 |
+
1.0
|
85 |
+
],
|
86 |
+
[
|
87 |
+
1.0,
|
88 |
+
1.0,
|
89 |
+
0.0,
|
90 |
+
1.0,
|
91 |
+
0.0,
|
92 |
+
1.0,
|
93 |
+
1.0,
|
94 |
+
1.0,
|
95 |
+
0.0,
|
96 |
+
1.0,
|
97 |
+
0.0,
|
98 |
+
0.0,
|
99 |
+
1.0
|
100 |
+
],
|
101 |
+
[
|
102 |
+
1.0,
|
103 |
+
1.0,
|
104 |
+
0.0,
|
105 |
+
1.0,
|
106 |
+
0.0,
|
107 |
+
1.0,
|
108 |
+
1.0,
|
109 |
+
1.0,
|
110 |
+
0.0,
|
111 |
+
1.0,
|
112 |
+
0.0,
|
113 |
+
0.0,
|
114 |
+
1.0
|
115 |
+
],
|
116 |
+
[
|
117 |
+
1.0,
|
118 |
+
1.0,
|
119 |
+
0.0,
|
120 |
+
1.0,
|
121 |
+
0.0,
|
122 |
+
1.0,
|
123 |
+
0.0,
|
124 |
+
1.0,
|
125 |
+
1.0,
|
126 |
+
1.0,
|
127 |
+
0.0,
|
128 |
+
0.0,
|
129 |
+
1.0
|
130 |
+
],
|
131 |
+
[
|
132 |
+
1.0,
|
133 |
+
1.0,
|
134 |
+
0.0,
|
135 |
+
1.0,
|
136 |
+
0.0,
|
137 |
+
1.0,
|
138 |
+
0.0,
|
139 |
+
1.0,
|
140 |
+
1.0,
|
141 |
+
1.0,
|
142 |
+
0.0,
|
143 |
+
0.0,
|
144 |
+
1.0
|
145 |
+
],
|
146 |
+
[
|
147 |
+
1.0,
|
148 |
+
1.0,
|
149 |
+
0.0,
|
150 |
+
1.0,
|
151 |
+
0.0,
|
152 |
+
1.0,
|
153 |
+
0.0,
|
154 |
+
1.0,
|
155 |
+
0.0,
|
156 |
+
1.0,
|
157 |
+
1.0,
|
158 |
+
0.0,
|
159 |
+
1.0
|
160 |
+
],
|
161 |
+
[
|
162 |
+
1.0,
|
163 |
+
1.0,
|
164 |
+
0.0,
|
165 |
+
1.0,
|
166 |
+
0.0,
|
167 |
+
1.0,
|
168 |
+
0.0,
|
169 |
+
1.0,
|
170 |
+
0.0,
|
171 |
+
1.0,
|
172 |
+
1.0,
|
173 |
+
0.0,
|
174 |
+
1.0
|
175 |
+
],
|
176 |
+
[
|
177 |
+
1.0,
|
178 |
+
1.0,
|
179 |
+
0.0,
|
180 |
+
1.0,
|
181 |
+
0.0,
|
182 |
+
1.0,
|
183 |
+
0.0,
|
184 |
+
1.0,
|
185 |
+
0.0,
|
186 |
+
1.0,
|
187 |
+
0.0,
|
188 |
+
0.0,
|
189 |
+
0.0
|
190 |
+
],
|
191 |
+
[
|
192 |
+
0.0,
|
193 |
+
0.0,
|
194 |
+
0.0,
|
195 |
+
0.0,
|
196 |
+
0.0,
|
197 |
+
0.0,
|
198 |
+
0.0,
|
199 |
+
0.0,
|
200 |
+
0.0,
|
201 |
+
0.0,
|
202 |
+
0.0,
|
203 |
+
0.0,
|
204 |
+
0.0
|
205 |
+
]
|
206 |
+
],
|
207 |
+
"end_transitions": [
|
208 |
+
1.0725135803222656,
|
209 |
+
-0.12956254184246063,
|
210 |
+
0.371111661195755,
|
211 |
+
0.5107485055923462,
|
212 |
+
0.8757023215293884,
|
213 |
+
0.2065323442220688,
|
214 |
+
1.1444202661514282,
|
215 |
+
-0.9789606928825378,
|
216 |
+
0.6102772951126099,
|
217 |
+
-1.5749095678329468,
|
218 |
+
0.6528273820877075
|
219 |
+
],
|
220 |
+
"start_transitions": [
|
221 |
+
0.9727583527565002,
|
222 |
+
0.15879656374454498,
|
223 |
+
2.214200973510742,
|
224 |
+
-0.17921259999275208,
|
225 |
+
-0.24598051607608795,
|
226 |
+
0.006965472362935543,
|
227 |
+
1.6770257949829102,
|
228 |
+
-2.4614217281341553,
|
229 |
+
-0.6591065526008606,
|
230 |
+
0.8901280164718628,
|
231 |
+
-0.345694363117218
|
232 |
+
],
|
233 |
+
"transitions": [
|
234 |
+
[
|
235 |
+
-0.047160349786281586,
|
236 |
+
-0.27636075019836426,
|
237 |
+
-0.01827988587319851,
|
238 |
+
-0.2668977379798889,
|
239 |
+
-0.3786858022212982,
|
240 |
+
-0.20064036548137665,
|
241 |
+
-0.1423189789056778,
|
242 |
+
-0.4146086573600769,
|
243 |
+
-0.5416123867034912,
|
244 |
+
0.09183064103126526,
|
245 |
+
0.284502238035202
|
246 |
+
],
|
247 |
+
[
|
248 |
+
0.011403710581362247,
|
249 |
+
-0.2831323444843292,
|
250 |
+
-0.1991034895181656,
|
251 |
+
0.07006354629993439,
|
252 |
+
0.2171705812215805,
|
253 |
+
0.08347953110933304,
|
254 |
+
-0.18687021732330322,
|
255 |
+
0.06655106693506241,
|
256 |
+
0.35198599100112915,
|
257 |
+
-0.041680119931697845,
|
258 |
+
0.4603417217731476
|
259 |
+
],
|
260 |
+
[
|
261 |
+
-0.009048350155353546,
|
262 |
+
0.37783774733543396,
|
263 |
+
-0.4404703378677368,
|
264 |
+
0.10700219124555588,
|
265 |
+
-0.631479799747467,
|
266 |
+
-0.10892672091722488,
|
267 |
+
-0.07639240473508835,
|
268 |
+
-0.007770363707095385,
|
269 |
+
0.5599918365478516,
|
270 |
+
0.055807191878557205,
|
271 |
+
0.24667567014694214
|
272 |
+
],
|
273 |
+
[
|
274 |
+
-0.28981271386146545,
|
275 |
+
-0.5259994864463806,
|
276 |
+
-0.23048432171344757,
|
277 |
+
0.4910091161727905,
|
278 |
+
0.12749718129634857,
|
279 |
+
0.16045114398002625,
|
280 |
+
0.2603921890258789,
|
281 |
+
-0.12336166203022003,
|
282 |
+
-0.08413107693195343,
|
283 |
+
-0.5930366516113281,
|
284 |
+
-0.34702208638191223
|
285 |
+
],
|
286 |
+
[
|
287 |
+
-0.2059697061777115,
|
288 |
+
-0.05627566576004028,
|
289 |
+
0.14756712317466736,
|
290 |
+
0.0013249005423858762,
|
291 |
+
0.32564589381217957,
|
292 |
+
0.24977774918079376,
|
293 |
+
0.006007824093103409,
|
294 |
+
-0.039906613528728485,
|
295 |
+
0.47553882002830505,
|
296 |
+
-0.011895392090082169,
|
297 |
+
0.03930443152785301
|
298 |
+
],
|
299 |
+
[
|
300 |
+
-0.061014119535684586,
|
301 |
+
0.08056101202964783,
|
302 |
+
-0.009875665418803692,
|
303 |
+
-0.22185459733009338,
|
304 |
+
0.07587382942438126,
|
305 |
+
-0.31542763113975525,
|
306 |
+
-0.5121344923973083,
|
307 |
+
0.1371414065361023,
|
308 |
+
0.19443896412849426,
|
309 |
+
0.31572508811950684,
|
310 |
+
0.2727954387664795
|
311 |
+
],
|
312 |
+
[
|
313 |
+
-0.5849944353103638,
|
314 |
+
-0.04580551013350487,
|
315 |
+
-0.48698607087135315,
|
316 |
+
0.6264642477035522,
|
317 |
+
-0.18660670518875122,
|
318 |
+
-0.4097630977630615,
|
319 |
+
0.0755583792924881,
|
320 |
+
0.4243757426738739,
|
321 |
+
-0.271587997674942,
|
322 |
+
-0.6559296250343323,
|
323 |
+
0.4165884852409363
|
324 |
+
],
|
325 |
+
[
|
326 |
+
-0.4860977828502655,
|
327 |
+
-0.08637966960668564,
|
328 |
+
0.011937582865357399,
|
329 |
+
0.33564722537994385,
|
330 |
+
0.14710360765457153,
|
331 |
+
-0.013451650738716125,
|
332 |
+
0.21268104016780853,
|
333 |
+
0.06677278131246567,
|
334 |
+
-0.1522866040468216,
|
335 |
+
0.15147152543067932,
|
336 |
+
-0.12879641354084015
|
337 |
+
],
|
338 |
+
[
|
339 |
+
0.26046469807624817,
|
340 |
+
0.5372914671897888,
|
341 |
+
-0.018869543448090553,
|
342 |
+
-0.13315194845199585,
|
343 |
+
0.6247418522834778,
|
344 |
+
-0.10685393214225769,
|
345 |
+
0.21527133882045746,
|
346 |
+
0.13126051425933838,
|
347 |
+
0.03024105355143547,
|
348 |
+
0.07785946130752563,
|
349 |
+
1.02604341506958
|
350 |
+
],
|
351 |
+
[
|
352 |
+
-0.1257716566324234,
|
353 |
+
-0.18844079971313477,
|
354 |
+
0.12964299321174622,
|
355 |
+
0.040601469576358795,
|
356 |
+
-0.29614439606666565,
|
357 |
+
0.27116966247558594,
|
358 |
+
0.04347997158765793,
|
359 |
+
-0.17520152032375336,
|
360 |
+
-0.2326679527759552,
|
361 |
+
0.28523188829421997,
|
362 |
+
0.06743942946195602
|
363 |
+
],
|
364 |
+
[
|
365 |
+
0.0764397531747818,
|
366 |
+
-0.044914186000823975,
|
367 |
+
-0.17368023097515106,
|
368 |
+
0.15744398534297943,
|
369 |
+
-0.18209576606750488,
|
370 |
+
0.0481279119849205,
|
371 |
+
-0.1274690479040146,
|
372 |
+
0.6103290319442749,
|
373 |
+
0.48212194442749023,
|
374 |
+
-0.27468565106391907,
|
375 |
+
0.23631976544857025
|
376 |
+
]
|
377 |
+
]
|
378 |
+
},
|
379 |
+
"eos_token_id": 2,
|
380 |
+
"hidden_act": "gelu",
|
381 |
+
"hidden_dropout_prob": 0.1,
|
382 |
+
"hidden_size": 1024,
|
383 |
+
"id2label": {
|
384 |
+
"0": "O",
|
385 |
+
"1": "B-DNA",
|
386 |
+
"2": "I-DNA",
|
387 |
+
"3": "B-protein",
|
388 |
+
"4": "I-protein",
|
389 |
+
"5": "B-cell_type",
|
390 |
+
"6": "I-cell_type",
|
391 |
+
"7": "B-cell_line",
|
392 |
+
"8": "I-cell_line",
|
393 |
+
"9": "B-RNA",
|
394 |
+
"10": "I-RNA"
|
395 |
+
},
|
396 |
+
"initializer_range": 0.02,
|
397 |
+
"intermediate_size": 4096,
|
398 |
+
"label2id": {
|
399 |
+
"B-DNA": 1,
|
400 |
+
"B-RNA": 9,
|
401 |
+
"B-cell_line": 7,
|
402 |
+
"B-cell_type": 5,
|
403 |
+
"B-protein": 3,
|
404 |
+
"I-DNA": 2,
|
405 |
+
"I-RNA": 10,
|
406 |
+
"I-cell_line": 8,
|
407 |
+
"I-cell_type": 6,
|
408 |
+
"I-protein": 4,
|
409 |
+
"O": 0
|
410 |
+
},
|
411 |
+
"layer_norm_eps": 1e-05,
|
412 |
+
"max_position_embeddings": 514,
|
413 |
+
"model_type": "roberta",
|
414 |
+
"num_attention_heads": 16,
|
415 |
+
"num_hidden_layers": 24,
|
416 |
+
"pad_token_id": 1,
|
417 |
+
"position_embedding_type": "absolute",
|
418 |
+
"torch_dtype": "float32",
|
419 |
+
"transformers_version": "4.20.1",
|
420 |
+
"type_vocab_size": 1,
|
421 |
+
"use_cache": true,
|
422 |
+
"vocab_size": 50265
|
423 |
+
}
|
pytorch_model.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:44b3057a5f8066f6723b94fbe639672389048eca5382b405eeb01bfb19695bee
|
3 |
+
size 1417416753
|