from scipy.spatial.distance import cdist from scipy.optimize import linear_sum_assignment import numpy as np def preregister_mean_std(verts_to_transform, target_verts, single_scale=True): mu_target = target_verts.mean(axis=0) mu_in = verts_to_transform.mean(axis=0) std_target = np.std(target_verts, axis=0) std_in = np.std(verts_to_transform, axis=0) if np.any(std_in == 0): std_in[std_in == 0] = 1 if np.any(std_target == 0): std_target[std_target == 0] = 1 if np.any(np.isnan(std_in)): std_in[np.isnan(std_in)] = 1 if np.any(np.isnan(std_target)): std_target[np.isnan(std_target)] = 1 if single_scale: std_target = np.linalg.norm(std_target) std_in = np.linalg.norm(std_in) transformed_verts = (verts_to_transform - mu_in) / std_in transformed_verts = transformed_verts * std_target + mu_target return transformed_verts def compute_WED(pd_vertices, pd_edges, gt_vertices, gt_edges, cv=-1, ce=1.0, normalized=True, preregister=True, single_scale=True): '''The function computes the Wireframe Edge Distance (WED) between two graphs. pd_vertices: list of predicted vertices pd_edges: list of predicted edges gt_vertices: list of ground truth vertices gt_edges: list of ground truth edges cv: vertex cost (the cost in centimeters of missing a vertex, default is -1, which means 1/4 of the diameter of the ground truth mesh) ce: edge cost (multiplier of the edge length for edge deletion and insertion, default is 1.0) normalized: if True, the WED is normalized by the total length of the ground truth edges preregister: if True, the predicted vertices have their mean and scale matched to the ground truth vertices ''' # Vertex coordinates are in centimeters. When cv and ce are set to 100.0 and 1.0 respectively, # missing a vertex is equivanlent predicting it 1 meter away from the ground truth vertex. # This is equivalent to setting cv=1 and ce=1 when the vertex coordinates are in meters. # When a negative cv value is set (the default behavior), cv is reset to 1/4 of the diameter of the ground truth wireframe. pd_vertices = np.array(pd_vertices) gt_vertices = np.array(gt_vertices) diameter = cdist(gt_vertices, gt_vertices).max() if cv < 0: cv = diameter / 4.0 # Cost of addining or deleting a vertex is set to 1/4 of the diameter of the ground truth mesh # Step 0: Prenormalize / preregister if preregister: pd_vertices = preregister_mean_std(pd_vertices, gt_vertices, single_scale=single_scale) pd_edges = np.array(pd_edges) gt_edges = np.array(gt_edges) # Step 1: Bipartite Matching distances = cdist(pd_vertices, gt_vertices, metric='euclidean') row_ind, col_ind = linear_sum_assignment(distances) # Step 2: Vertex Translation translation_costs = np.sum(distances[row_ind, col_ind]) # Additional: Vertex Deletion unmatched_pd_indices = set(range(len(pd_vertices))) - set(row_ind) deletion_costs = cv * len(unmatched_pd_indices) # Step 3: Vertex Insertion unmatched_gt_indices = set(range(len(gt_vertices))) - set(col_ind) insertion_costs = cv * len(unmatched_gt_indices) # Step 4: Edge Deletion and Insertion updated_pd_edges = [(col_ind[np.where(row_ind == edge[0])[0][0]], col_ind[np.where(row_ind == edge[1])[0][0]]) for edge in pd_edges if edge[0] in row_ind and edge[1] in row_ind] pd_edges_set = set(map(tuple, [set(edge) for edge in updated_pd_edges])) gt_edges_set = set(map(tuple, [set(edge) for edge in gt_edges])) # Delete edges not in ground truth edges_to_delete = pd_edges_set - gt_edges_set vert_tf = [np.where(col_ind == v)[0][0] if v in col_ind else 0 for v in range(len(gt_vertices))] deletion_edge_costs = ce * sum(np.linalg.norm(pd_vertices[vert_tf[edge[0]]] - pd_vertices[vert_tf[edge[1]]]) for edge in edges_to_delete) # Insert missing edges from ground truth edges_to_insert = gt_edges_set - pd_edges_set insertion_edge_costs = ce * sum(np.linalg.norm(gt_vertices[edge[0]] - gt_vertices[edge[1]]) for edge in edges_to_insert) # Step 5: Calculation of WED WED = translation_costs + deletion_costs + insertion_costs + deletion_edge_costs + insertion_edge_costs if normalized: total_length_of_gt_edges = np.linalg.norm((gt_vertices[gt_edges[:, 0]] - gt_vertices[gt_edges[:, 1]]), axis=1).sum() WED = WED / total_length_of_gt_edges # print ("Total length", total_length_of_gt_edges) return WED