Metal Ion Binding Prediction
Collection
This group contains all relative training datasets and model checkpoints trained on these datasets for Metal Ion Binding Prediction.
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2 items
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Updated
Base model: westlake-repl/SaProt_650M_AF2
Task type: protein-level classification
Binary label represented by 1 for the binding and 0 for the non-binding.
Dataset: SaProtHub/Dataset-Metal_Ion_Binding
Model input type: SA(Structure-aware) sequence
Performance (on test set): 79.37% Accuracy
LoRA config:
- r: 32
- lora_dropout: 0
- lora_alpha: 64
- target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
- modules_to_save: ["classifier"]
Training config:
- optimizer:
- class: AdamW
- betas: (0.9, 0.98)
- weight_decay: 0.01
- learning rate: 5e-4
- epoch: 100
- batch size: 64
- precision: 16-mixed
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