pointing dictionaries from the mtl module's init 5539d14 verified madhavanvenkatesh commited on Aug 28
allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390) 47e0ef8 verified ctheodoris madhavanvenkatesh commited on Aug 21
"save_model_without_heads" is redundant (#385) de10ab0 verified ctheodoris madhavanvenkatesh commited on Aug 21
comment out "def save_model_without_heads(original_model_save_directory)"; redundant for ISP/Emb extractor (#382) 22bf20f verified ctheodoris madhavanvenkatesh commited on Aug 21
fixed bug related to dynamic ranges in dictionary with 'min' and 'max' value mismatch in optuna suggest fn (#380) fe1640b verified ctheodoris madhavanvenkatesh commited on Aug 21
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 933ca80 ctheodoris commited on Aug 15
update to only have gene names as keys in gene_name_id_dict e61485e verified ctheodoris commited on Aug 11
Add function for summing of Ensembl IDs (#377) 1e18102 verified ctheodoris hchen725 commited on Aug 11
Add function to get number of model embeddings (#364) c90d791 verified ctheodoris hchen725 commited on Jul 9
update perturber stats to reflect cos sim and emb_extractor to suppress warnings for non-cls 25dd1da ctheodoris commited on Jul 7
update to account for set of perturbed genes with aggregate_data eb038a6 ctheodoris commited on Jul 2
Update with gene classifier, custom token dict, and str validate options (#329) 0568479 verified ctheodoris hchen725 commited on Apr 8
update examples for predict_eval and handle roc for 2 cell classes eeba323 Christina Theodoris commited on Mar 4
Get the gene keys and gene list keys from the token dictionary instead of medians (#304) b294421 verified ctheodoris hchen725 commited on Feb 28
Add option for variable input_size and to add CLS/SEP Tokens (#299) aa25cd2 verified ctheodoris hchen725 commited on Feb 22
add load model for train and fix validate anchor gene error 0d675a3 Christina Theodoris commited on Feb 20
Handle case of single gene del for isp modeling of gene embs 316d817 Christina Theodoris commited on Jan 26