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etrop commited on
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03a1ac1
1 Parent(s): 6292cb9

feat: add chromatin access support

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Files changed (1) hide show
  1. agro-nt-tasks.py +7 -10
agro-nt-tasks.py CHANGED
@@ -4,13 +4,9 @@
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  """TODO: Add a description here."""
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- import csv
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- import json
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  import os
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  from typing import List
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  from Bio import SeqIO
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- import numpy as np
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-
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  import datasets
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@@ -57,14 +53,13 @@ _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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  'gene_exp.solanum_lycopersicum',
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  'gene_exp.zea_mays',
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  'gene_exp.arabidopsis_thaliana',
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- 'chromatin_access.arabidopis_thaliana',
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- 'chromatin_access.sorghum_bicolor',
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- 'chromatin_access.oryza_sativa_ZS97_RS2',
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  'chromatin_access.oryza_sativa_MH63_RS2',
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- 'chromatin_access.zea_mays',
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- 'chromatin_access.brachypodium_distachyon',
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  'chromatin_access.setaria_italica',
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- ]
 
 
 
 
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  _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
@@ -117,6 +112,8 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
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  feature_dit["label"] = datasets.Value("float32")
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  elif self.config.task_type == 'multi_regression':
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  feature_dit['labels'] = [datasets.Value("float32")]
 
 
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  features = datasets.Features(feature_dit)
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  """TODO: Add a description here."""
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  import os
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  from typing import List
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  from Bio import SeqIO
 
 
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  import datasets
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  'gene_exp.solanum_lycopersicum',
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  'gene_exp.zea_mays',
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  'gene_exp.arabidopsis_thaliana',
 
 
 
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  'chromatin_access.oryza_sativa_MH63_RS2',
 
 
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  'chromatin_access.setaria_italica',
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+ 'chromatin_access.oryza_sativa_ZS97_RS2',
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+ 'chromatin_access.arabidopis_thaliana',
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+ 'chromatin_access.brachypodium_distachyon',
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+ 'chromatin_access.sorghum_bicolor',
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+ 'chromatin_access.zea_mays',]
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  _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
 
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  feature_dit["label"] = datasets.Value("float32")
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  elif self.config.task_type == 'multi_regression':
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  feature_dit['labels'] = [datasets.Value("float32")]
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+ elif self.config.task_type == 'multi_label':
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+ feature_dit['labels'] = [datasets.Value("int8")]
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  features = datasets.Features(feature_dit)
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