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The dataset viewer is not available for this split.
Cannot load the dataset split (in streaming mode) to extract the first rows.
Error code: StreamingRowsError
Exception: NotImplementedError
Message: That compression method is not supported
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/utils.py", line 99, in get_rows_or_raise
return get_rows(
File "/src/libs/libcommon/src/libcommon/utils.py", line 197, in decorator
return func(*args, **kwargs)
File "/src/services/worker/src/worker/utils.py", line 77, in get_rows
rows_plus_one = list(itertools.islice(ds, rows_max_number + 1))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2097, in __iter__
example = _apply_feature_types_on_example(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1635, in _apply_feature_types_on_example
decoded_example = features.decode_example(encoded_example, token_per_repo_id=token_per_repo_id)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 2044, in decode_example
return {
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 2045, in <dictcomp>
column_name: decode_nested_example(feature, value, token_per_repo_id=token_per_repo_id)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 1405, in decode_nested_example
return schema.decode_example(obj, token_per_repo_id=token_per_repo_id)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/image.py", line 183, in decode_example
with xopen(path, "rb", download_config=download_config) as f:
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/utils/file_utils.py", line 948, in xopen
file_obj = fsspec.open(file, mode=mode, *args, **kwargs).open()
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 135, in open
return self.__enter__()
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/core.py", line 103, in __enter__
f = self.fs.open(self.path, mode=mode)
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/spec.py", line 1293, in open
f = self._open(
File "/src/services/worker/.venv/lib/python3.9/site-packages/fsspec/implementations/zip.py", line 129, in _open
out = self.zip.open(path, mode.strip("b"), force_zip64=self.force_zip_64)
File "/usr/local/lib/python3.9/zipfile.py", line 1568, in open
return ZipExtFile(zef_file, mode, zinfo, pwd, True)
File "/usr/local/lib/python3.9/zipfile.py", line 799, in __init__
self._decompressor = _get_decompressor(self._compress_type)
File "/usr/local/lib/python3.9/zipfile.py", line 698, in _get_decompressor
_check_compression(compress_type)
File "/usr/local/lib/python3.9/zipfile.py", line 678, in _check_compression
raise NotImplementedError("That compression method is not supported")
NotImplementedError: That compression method is not supportedNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
AIObioEnts model files
NOTE: these models are only compatible with the AIObioEnts v0.0.1
This dataset contains the model files for AIObioEnts, trained using AIONER with 4 different pre-trained models:
- BiomedBERT-base pre-trained on abstracts from PubMed; the best-performing model reported in the original AIONER paper
- BiomedBERT-base pre-trained on both abstracts from PubMed and full-texts articles from PubMedCentral
- BioLinkBERT-base
- BioLinkBERT large
for the identification of core biomedical entities—gene, disease, cell line, chemical, species, variant— in textual data, in addition to the models fine-tuned with selected entites from the AnatEM corpus—cell component, tissue, organ, multi-tissue structure, cancer.
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