Datasets:

UMCU
/

pmc_patientcases_dutch_marianmt

Languages:

Dutch

License:

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train

The dataset viewer is not available for this split.

Cannot extract the features (columns) for the split 'train' of the config 'default' of the dataset.

Error code:   FeaturesError
Exception:    ArrowInvalid
Message:      JSON parse error: Column(/age/[]/[]) changed from number to string in row 0
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 160, in _generate_tables
                  df = pandas_read_json(f)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 38, in pandas_read_json
                  return pd.read_json(path_or_buf, **kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pandas/io/json/_json.py", line 815, in read_json
                  return json_reader.read()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pandas/io/json/_json.py", line 1025, in read
                  obj = self._get_object_parser(self.data)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pandas/io/json/_json.py", line 1051, in _get_object_parser
                  obj = FrameParser(json, **kwargs).parse()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pandas/io/json/_json.py", line 1187, in parse
                  self._parse()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pandas/io/json/_json.py", line 1403, in _parse
                  ujson_loads(json, precise_float=self.precise_float), dtype=None
              ValueError: Trailing data
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 233, in compute_first_rows_from_streaming_response
                  iterable_dataset = iterable_dataset._resolve_features()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2998, in _resolve_features
                  features = _infer_features_from_batch(self.with_format(None)._head())
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1918, in _head
                  return _examples_to_batch(list(self.take(n)))
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2093, in __iter__
                  for key, example in ex_iterable:
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1576, in __iter__
                  for key_example in islice(self.ex_iterable, self.n - ex_iterable_num_taken):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 279, in __iter__
                  for key, pa_table in self.generate_tables_fn(**gen_kwags):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 163, in _generate_tables
                  raise e
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 137, in _generate_tables
                  pa_table = paj.read_json(
                File "pyarrow/_json.pyx", line 308, in pyarrow._json.read_json
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowInvalid: JSON parse error: Column(/age/[]/[]) changed from number to string in row 0

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Dataset Card for Pmc Patientcases Dutch Marianmt

The original dataset was created by: Zhengyun Zhao, Qiao Jin, Fangyuan Chen, Tuorui Peng & Sheng Yu The source language: English The original data source.

Data description

Translation of PMC patient records using MariaNMT, using the PubScience library. For the translation we concatenated chunked translations to account for the maximum context length of the MariaNMT model.

Note: these are unfiltered translations from an NMT model and might therefore contain artifacts such as spurious token-repetitions.

Acknowledgement

The work received funding from the European Union's Horizon Europe research and innovation programme under Grant Agreement No. 101057849 (DataTools4Heart project).

Doi and references

[DOI and reference to the source paper/s]

The reference for the original PMC Patient cases is

@article{Zhao2023ALD,
  title={A large-scale dataset of patient summaries for retrieval-based clinical decision support systems.},
  author={Zhengyun Zhao and Qiao Jin and Fangyuan Chen and Tuorui Peng and Sheng Yu},
  journal={Scientific data},
  year={2023},
  volume={10 1},
  pages={
          909
        },
  url={https://api.semanticscholar.org/CorpusID:266360591}
}

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