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200 | BioInfer.d144.s0 | [
{
"id": "BioInfer.d144.s0__text",
"type": "Sentence",
"text": [
"Coexpression of the A8R and A23R genes in Escherichia coli was required for in vitro activity."
],
"offsets": [
[
0,
94
]
]
}
] | [
{
"id": "BioInfer.d144.s0.e0",
"type": "Gene",
"text": [
"A23R"
],
"offsets": [
[
28,
32
]
],
"normalized": []
},
{
"id": "BioInfer.d144.s0.e1",
"type": "Gene",
"text": [
"A8R"
],
"offsets": [
[
20,
23
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d144.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d144.s0.e0",
"arg2_id": "BioInfer.d144.s0.e1",
"normalized": []
}
] |
201 | BioInfer.d144.s1 | [
{
"id": "BioInfer.d144.s1__text",
"type": "Sentence",
"text": [
"Expression of the A8R and A23R genes occurred between 1 and 5 h after vaccinia virus infection and was not prevented by an inhibitor of DNA replication, consistent with a role for VITF-3 in specifically regulating intermediate transcription in vivo."
],
"offsets": [
[
0,
249
]
]
}
] | [
{
"id": "BioInfer.d144.s1.e0",
"type": "Gene/protein/RNA",
"text": [
"A23R"
],
"offsets": [
[
26,
30
]
],
"normalized": []
},
{
"id": "BioInfer.d144.s1.e1",
"type": "Gene/protein/RNA",
"text": [
"VITF-3"
],
"offsets": [
[
180,
186
]
],
"normalized": []
},
{
"id": "BioInfer.d144.s1.e2",
"type": "Gene/protein/RNA",
"text": [
"A8R"
],
"offsets": [
[
18,
21
]
],
"normalized": []
}
] | [] | [] | [] |
202 | BioInfer.d144.s2 | [
{
"id": "BioInfer.d144.s2__text",
"type": "Sentence",
"text": [
"We found that the 34- and 45-kDa polypeptides encoded by vaccinia virus ORFs A8R and A23R, respectively, were necessary to reconstitute transcription of a template with an intermediate stage promoter."
],
"offsets": [
[
0,
200
]
]
}
] | [
{
"id": "BioInfer.d144.s2.e0",
"type": "Gene/protein/RNA",
"text": [
"A8R"
],
"offsets": [
[
77,
80
]
],
"normalized": []
},
{
"id": "BioInfer.d144.s2.e1",
"type": "Gene/protein/RNA",
"text": [
"A23R"
],
"offsets": [
[
85,
89
]
],
"normalized": []
}
] | [] | [] | [] |
203 | BioInfer.d147.s0 | [
{
"id": "BioInfer.d147.s0__text",
"type": "Sentence",
"text": [
"Cofilin was identified by peptide sequencing, and cofilin recruitment and Listeria tail length were found to be pH-dependent, in agreement with its recently reported role in enhancing actin filament turnover."
],
"offsets": [
[
0,
208
]
]
}
] | [
{
"id": "BioInfer.d147.s0.e0",
"type": "Individual_protein",
"text": [
"Cofilin"
],
"offsets": [
[
0,
7
]
],
"normalized": []
},
{
"id": "BioInfer.d147.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"cofilin"
],
"offsets": [
[
50,
57
]
],
"normalized": []
},
{
"id": "BioInfer.d147.s0.e2",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
184,
189
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d147.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d147.s0.e0",
"arg2_id": "BioInfer.d147.s0.e2",
"normalized": []
}
] |
204 | BioInfer.d148.s0 | [
{
"id": "BioInfer.d148.s0__text",
"type": "Sentence",
"text": [
"Compared with control and contralateral kidneys, the ligated kidneys displayed a dynamic expression of mRNAs for many apoptosis-related molecules, which included an up to threefold increase for Fas, Fas ligand, TNF-R1, TRAIL, TRADD, RIP, and caspase-8, and an up to twofold increase for FADD and FAP, but there was little change for FAF."
],
"offsets": [
[
0,
337
]
]
}
] | [
{
"id": "BioInfer.d148.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"caspase-8"
],
"offsets": [
[
242,
251
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"TRAIL"
],
"offsets": [
[
219,
224
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"FAP"
],
"offsets": [
[
296,
299
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e3",
"type": "Gene/protein/RNA",
"text": [
"RIP"
],
"offsets": [
[
233,
236
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e4",
"type": "Gene/protein/RNA",
"text": [
"TNF-R1"
],
"offsets": [
[
211,
217
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e5",
"type": "Gene/protein/RNA",
"text": [
"Fas"
],
"offsets": [
[
194,
197
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e6",
"type": "Gene/protein/RNA",
"text": [
"TRADD"
],
"offsets": [
[
226,
231
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e7",
"type": "Gene/protein/RNA",
"text": [
"Fas ligand"
],
"offsets": [
[
199,
209
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e8",
"type": "Gene/protein/RNA",
"text": [
"FAF"
],
"offsets": [
[
333,
336
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s0.e9",
"type": "Gene/protein/RNA",
"text": [
"FADD"
],
"offsets": [
[
287,
291
]
],
"normalized": []
}
] | [] | [] | [] |
205 | BioInfer.d148.s1 | [
{
"id": "BioInfer.d148.s1__text",
"type": "Sentence",
"text": [
"To detect the expression of apoptosis-related molecules, ribonuclease protection assay was used with specific antisense RNA probes for Fas, Fas ligand, TNFR-1, TRAIL, FADD, TRADD, RIP, FAF, FAP, and caspase-8."
],
"offsets": [
[
0,
209
]
]
}
] | [
{
"id": "BioInfer.d148.s1.e0",
"type": "Gene/protein/RNA",
"text": [
"TRAIL"
],
"offsets": [
[
160,
165
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e1",
"type": "Gene/protein/RNA",
"text": [
"ribonuclease"
],
"offsets": [
[
57,
69
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e2",
"type": "Gene/protein/RNA",
"text": [
"FAF"
],
"offsets": [
[
185,
188
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e3",
"type": "Gene/protein/RNA",
"text": [
"FAP"
],
"offsets": [
[
190,
193
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e4",
"type": "Gene/protein/RNA",
"text": [
"TRADD"
],
"offsets": [
[
173,
178
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e5",
"type": "Gene/protein/RNA",
"text": [
"RIP"
],
"offsets": [
[
180,
183
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e6",
"type": "Gene/protein/RNA",
"text": [
"caspase-8"
],
"offsets": [
[
199,
208
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e7",
"type": "Gene/protein/RNA",
"text": [
"FADD"
],
"offsets": [
[
167,
171
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e8",
"type": "Gene/protein/RNA",
"text": [
"Fas ligand"
],
"offsets": [
[
140,
150
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e9",
"type": "Gene/protein/RNA",
"text": [
"TNFR-1"
],
"offsets": [
[
152,
158
]
],
"normalized": []
},
{
"id": "BioInfer.d148.s1.e10",
"type": "Gene/protein/RNA",
"text": [
"Fas"
],
"offsets": [
[
135,
138
]
],
"normalized": []
}
] | [] | [] | [] |
206 | BioInfer.d149.s0 | [
{
"id": "BioInfer.d149.s0__text",
"type": "Sentence",
"text": [
"Complete gene sequences for the nucleocapsid protein (N) and phosphoprotein (P/V) have been determined and recombinant N and V proteins produced in baculovirus."
],
"offsets": [
[
0,
160
]
]
}
] | [
{
"id": "BioInfer.d149.s0.e0",
"type": "Individual_protein",
"text": [
"N"
],
"offsets": [
[
54,
55
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e1",
"type": "Individual_protein",
"text": [
"V"
],
"offsets": [
[
79,
80
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"V"
],
"offsets": [
[
125,
126
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e3",
"type": "Individual_protein",
"text": [
"P"
],
"offsets": [
[
77,
78
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e4",
"type": "Gene/protein/RNA",
"text": [
"N"
],
"offsets": [
[
119,
120
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e5",
"type": "Individual_protein",
"text": [
"phosphoprotein"
],
"offsets": [
[
61,
75
]
],
"normalized": []
},
{
"id": "BioInfer.d149.s0.e6",
"type": "Individual_protein",
"text": [
"nucleocapsid protein"
],
"offsets": [
[
32,
52
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d149.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d149.s0.e1",
"arg2_id": "BioInfer.d149.s0.e5",
"normalized": []
},
{
"id": "BioInfer.d149.s0.i1",
"type": "PPI",
"arg1_id": "BioInfer.d149.s0.e3",
"arg2_id": "BioInfer.d149.s0.e5",
"normalized": []
}
] |
207 | BioInfer.d150.s0 | [
{
"id": "BioInfer.d150.s0__text",
"type": "Sentence",
"text": [
"CONCLUSIONS: The expression of alpha-catenin, beta-catenin, and gamma-catenin is related to histological type and differentiation in NSCLC, although catenins have no independent prognostic value."
],
"offsets": [
[
0,
195
]
]
}
] | [
{
"id": "BioInfer.d150.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"catenins"
],
"offsets": [
[
149,
157
]
],
"normalized": []
},
{
"id": "BioInfer.d150.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"beta-catenin"
],
"offsets": [
[
46,
58
]
],
"normalized": []
},
{
"id": "BioInfer.d150.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"gamma-catenin"
],
"offsets": [
[
64,
77
]
],
"normalized": []
},
{
"id": "BioInfer.d150.s0.e3",
"type": "Gene/protein/RNA",
"text": [
"alpha-catenin"
],
"offsets": [
[
31,
44
]
],
"normalized": []
}
] | [] | [] | [] |
208 | BioInfer.d150.s1 | [
{
"id": "BioInfer.d150.s1__text",
"type": "Sentence",
"text": [
"Reduced expression of alpha-catenin, beta-catenin, and gamma-catenin is associated with high cell proliferative activity and poor differentiation in non-small cell lung cancer."
],
"offsets": [
[
0,
176
]
]
}
] | [
{
"id": "BioInfer.d150.s1.e0",
"type": "Gene/protein/RNA",
"text": [
"gamma-catenin"
],
"offsets": [
[
55,
68
]
],
"normalized": []
},
{
"id": "BioInfer.d150.s1.e1",
"type": "Gene/protein/RNA",
"text": [
"alpha-catenin"
],
"offsets": [
[
22,
35
]
],
"normalized": []
},
{
"id": "BioInfer.d150.s1.e2",
"type": "Gene/protein/RNA",
"text": [
"beta-catenin"
],
"offsets": [
[
37,
49
]
],
"normalized": []
}
] | [] | [] | [] |
209 | BioInfer.d151.s0 | [
{
"id": "BioInfer.d151.s0__text",
"type": "Sentence",
"text": [
"CONCLUSIONS: These results suggest the cooperative modulation of the actin cytoskeleton by cofilin and Aip1."
],
"offsets": [
[
0,
108
]
]
}
] | [
{
"id": "BioInfer.d151.s0.e0",
"type": "Individual_protein",
"text": [
"Aip1"
],
"offsets": [
[
103,
107
]
],
"normalized": []
},
{
"id": "BioInfer.d151.s0.e1",
"type": "Individual_protein",
"text": [
"cofilin"
],
"offsets": [
[
91,
98
]
],
"normalized": []
},
{
"id": "BioInfer.d151.s0.e2",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
69,
74
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d151.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d151.s0.e0",
"arg2_id": "BioInfer.d151.s0.e1",
"normalized": []
},
{
"id": "BioInfer.d151.s0.i1",
"type": "PPI",
"arg1_id": "BioInfer.d151.s0.e0",
"arg2_id": "BioInfer.d151.s0.e2",
"normalized": []
},
{
"id": "BioInfer.d151.s0.i2",
"type": "PPI",
"arg1_id": "BioInfer.d151.s0.e1",
"arg2_id": "BioInfer.d151.s0.e2",
"normalized": []
}
] |
210 | BioInfer.d151.s1 | [
{
"id": "BioInfer.d151.s1__text",
"type": "Sentence",
"text": [
"Immunofluorescence staining of a wild-type strain using anti-Aip1 antibodies revealed that Aip1 was distributed in cortical actin patches where cofilin was also co-localized."
],
"offsets": [
[
0,
174
]
]
}
] | [
{
"id": "BioInfer.d151.s1.e0",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
124,
129
]
],
"normalized": []
},
{
"id": "BioInfer.d151.s1.e1",
"type": "Individual_protein",
"text": [
"cofilin"
],
"offsets": [
[
144,
151
]
],
"normalized": []
},
{
"id": "BioInfer.d151.s1.e2",
"type": "Individual_protein",
"text": [
"Aip1"
],
"offsets": [
[
91,
95
]
],
"normalized": []
},
{
"id": "BioInfer.d151.s1.e3",
"type": "Gene/protein/RNA",
"text": [
"Aip1"
],
"offsets": [
[
61,
65
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d151.s1.i0",
"type": "PPI",
"arg1_id": "BioInfer.d151.s1.e0",
"arg2_id": "BioInfer.d151.s1.e1",
"normalized": []
},
{
"id": "BioInfer.d151.s1.i1",
"type": "PPI",
"arg1_id": "BioInfer.d151.s1.e0",
"arg2_id": "BioInfer.d151.s1.e2",
"normalized": []
}
] |
211 | BioInfer.d153.s0 | [
{
"id": "BioInfer.d153.s0__text",
"type": "Sentence",
"text": [
"Confluent calf pulmonary artery endothelial monolayers exposed to 95% oxygen for 1, 2, or 3 days exhibit a time-dependent increase in adherence to substratum, which closely parallels changes in actin cytoarchitecture and the distribution of focal contact proteins vinculin and talin."
],
"offsets": [
[
0,
283
]
]
}
] | [
{
"id": "BioInfer.d153.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"actin"
],
"offsets": [
[
194,
199
]
],
"normalized": []
},
{
"id": "BioInfer.d153.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"talin"
],
"offsets": [
[
277,
282
]
],
"normalized": []
},
{
"id": "BioInfer.d153.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"vinculin"
],
"offsets": [
[
264,
272
]
],
"normalized": []
}
] | [] | [] | [] |
212 | BioInfer.d154.s0 | [
{
"id": "BioInfer.d154.s0__text",
"type": "Sentence",
"text": [
"Conversely, inhibition of LIMK's activity by expressing a dominant negative construct, LIMK1-, or expression of the constitutively active S3A cofilin mutant induces loss of actin filaments at the phagocytic cup and also inhibits phagocytosis."
],
"offsets": [
[
0,
242
]
]
}
] | [
{
"id": "BioInfer.d154.s0.e0",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
173,
178
]
],
"normalized": []
},
{
"id": "BioInfer.d154.s0.e1",
"type": "Individual_protein",
"text": [
"LIMK"
],
"offsets": [
[
26,
30
]
],
"normalized": []
},
{
"id": "BioInfer.d154.s0.e2",
"type": "Individual_protein",
"text": [
"cofilin"
],
"offsets": [
[
142,
149
]
],
"normalized": []
},
{
"id": "BioInfer.d154.s0.e3",
"type": "Individual_protein",
"text": [
"LIMK1-"
],
"offsets": [
[
87,
93
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d154.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d154.s0.e0",
"arg2_id": "BioInfer.d154.s0.e1",
"normalized": []
},
{
"id": "BioInfer.d154.s0.i1",
"type": "PPI",
"arg1_id": "BioInfer.d154.s0.e0",
"arg2_id": "BioInfer.d154.s0.e2",
"normalized": []
},
{
"id": "BioInfer.d154.s0.i2",
"type": "PPI",
"arg1_id": "BioInfer.d154.s0.e0",
"arg2_id": "BioInfer.d154.s0.e3",
"normalized": []
},
{
"id": "BioInfer.d154.s0.i3",
"type": "PPI",
"arg1_id": "BioInfer.d154.s0.e1",
"arg2_id": "BioInfer.d154.s0.e3",
"normalized": []
}
] |
213 | BioInfer.d155.s0 | [
{
"id": "BioInfer.d155.s0__text",
"type": "Sentence",
"text": [
"Co-precipitation experiments using whole cell lysates indicate that the mutant form of alpha-catenin binds beta-catenin and plakoglobin, and can form a structural complex with E-cadherin via these interactions."
],
"offsets": [
[
0,
210
]
]
}
] | [
{
"id": "BioInfer.d155.s0.e0",
"type": "Individual_protein",
"text": [
"alpha-catenin"
],
"offsets": [
[
87,
100
]
],
"normalized": []
},
{
"id": "BioInfer.d155.s0.e1",
"type": "Individual_protein",
"text": [
"E-cadherin"
],
"offsets": [
[
176,
186
]
],
"normalized": []
},
{
"id": "BioInfer.d155.s0.e2",
"type": "Individual_protein",
"text": [
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107,
119
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"type": "Individual_protein",
"text": [
"plakoglobin"
],
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124,
135
]
],
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}
] | [] | [] | [
{
"id": "BioInfer.d155.s0.i0",
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] |
214 | BioInfer.d156.s0 | [
{
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],
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[
0,
132
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99,
111
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"cadherin"
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43,
51
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] |
215 | BioInfer.d157.s0 | [
{
"id": "BioInfer.d157.s0__text",
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"Cotransfections with different combinations of these genes demonstrated that a subset of four of them, coding for the HSV helicase-primase complex (UL5, UL8, UL52) and the major DNA-binding protein (UL29), was already sufficient to mediate the helper effect."
],
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[
0,
258
]
]
}
] | [
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"helicase-primase"
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122,
138
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199,
203
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158,
162
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172,
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148,
151
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153,
156
]
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}
] |
216 | BioInfer.d158.s0 | [
{
"id": "BioInfer.d158.s0__text",
"type": "Sentence",
"text": [
"Crystallization and preliminary crystallographic analysis of the N-terminal actin binding domain of human fimbrin."
],
"offsets": [
[
0,
114
]
]
}
] | [
{
"id": "BioInfer.d158.s0.e0",
"type": "Individual_protein",
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"fimbrin"
],
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106,
113
]
],
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},
{
"id": "BioInfer.d158.s0.e1",
"type": "Individual_protein",
"text": [
"actin"
],
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76,
81
]
],
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}
] | [] | [] | [
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}
] |
217 | BioInfer.d159.s0 | [
{
"id": "BioInfer.d159.s0__text",
"type": "Sentence",
"text": [
"CV-1 cells were transfected with cloned genes from wild-type HPIV-3 encoding the large protein (L), phosphoprotein (P), and nucleocapsid protein (NP), alone or together, for the expression of biologically active proteins."
],
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[
0,
221
]
]
}
] | [
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"id": "BioInfer.d159.s0.e0",
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96,
97
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146,
148
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{
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124,
144
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{
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81,
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116,
117
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{
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"text": [
"phosphoprotein"
],
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100,
114
]
],
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}
] | [] | [] | [] |
218 | BioInfer.d160.s0 | [
{
"id": "BioInfer.d160.s0__text",
"type": "Sentence",
"text": [
"Cytoplasmic staining included stress fibers that colocalized with actin, probably as a consequence of the myosin heavy chain component of the fusion protein."
],
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[
0,
157
]
]
}
] | [
{
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66,
71
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],
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106,
124
]
],
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}
] | [] | [] | [
{
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}
] |
219 | BioInfer.d161.s0 | [
{
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],
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[
0,
190
]
]
}
] | [
{
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139,
155
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161,
166
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129,
137
]
],
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] | [] | [] | [
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}
] |
220 | BioInfer.d161.s1 | [
{
"id": "BioInfer.d161.s1__text",
"type": "Sentence",
"text": [
"Experiments using a peptide that corresponds to the N-terminus of thymosin beta(4) (residues 6-22) confirm the presence of an extensive binding surface between actin and thymosin beta(4), and explain why thymosin beta(4) and profilin can bind simultaneously to actin."
],
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[
0,
267
]
]
}
] | [
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],
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225,
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]
],
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}
] | [] | [] | [
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}
] |
221 | BioInfer.d162.s0 | [
{
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"text": [
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],
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[
0,
202
]
]
}
] | [
{
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],
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59,
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222 | BioInfer.d163.s0 | [
{
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"type": "Sentence",
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],
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0,
109
]
]
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] | [
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80,
85
]
],
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}
] | [] | [] | [] |
223 | BioInfer.d163.s1 | [
{
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"type": "Sentence",
"text": [
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],
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0,
118
]
]
}
] | [
{
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24,
29
]
],
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}
] | [] | [] | [] |
224 | BioInfer.d163.s2 | [
{
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"type": "Sentence",
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],
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[
0,
120
]
]
}
] | [
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27,
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17,
22
]
],
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}
] | [] | [] | [] |
225 | BioInfer.d164.s0 | [
{
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"type": "Sentence",
"text": [
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],
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[
0,
209
]
]
}
] | [
{
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0,
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172,
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30,
42
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],
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] | [] | [] | [
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] |
226 | BioInfer.d165.s0 | [
{
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],
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0,
129
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}
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53,
57
]
],
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},
{
"id": "BioInfer.d165.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"SIR3"
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73,
77
]
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"id": "BioInfer.d165.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"SIR1"
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67,
71
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"id": "BioInfer.d165.s0.e3",
"type": "Gene/protein/RNA",
"text": [
"SIR4"
],
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[
81,
85
]
],
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}
] | [] | [] | [] |
227 | BioInfer.d166.s0 | [
{
"id": "BioInfer.d166.s0__text",
"type": "Sentence",
"text": [
"Deletion of both RAD50 and RAD51 produces a phenotype similar to that produced by deletion of RAD52."
],
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[
0,
100
]
]
}
] | [
{
"id": "BioInfer.d166.s0.e0",
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"RAD51"
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27,
32
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"id": "BioInfer.d166.s0.e1",
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"RAD52"
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94,
99
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"id": "BioInfer.d166.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"RAD50"
],
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[
17,
22
]
],
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}
] | [] | [] | [] |
228 | BioInfer.d166.s1 | [
{
"id": "BioInfer.d166.s1__text",
"type": "Sentence",
"text": [
"rad59 mutations completely abolished the ability to generate type II survivors, while rad50 mutations decreased the growth viability of type II survivors but did not completely eliminate their appearance."
],
"offsets": [
[
0,
204
]
]
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] | [
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0,
5
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"id": "BioInfer.d166.s1.e1",
"type": "Gene/protein/RNA",
"text": [
"rad50"
],
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[
86,
91
]
],
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}
] | [] | [] | [] |
229 | BioInfer.d167.s0 | [
{
"id": "BioInfer.d167.s0__text",
"type": "Sentence",
"text": [
"Deletion of SIR4 enhanced mURA3 and MET15 silencing, but deletion of SIR1 or SIR3 did not affect silencing, indicating that the mechanism of silencing differs from that at telomeres and silent mating loci."
],
"offsets": [
[
0,
205
]
]
}
] | [
{
"id": "BioInfer.d167.s0.e0",
"type": "Gene",
"text": [
"mURA3"
],
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26,
31
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},
{
"id": "BioInfer.d167.s0.e1",
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12,
16
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},
{
"id": "BioInfer.d167.s0.e2",
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77,
81
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{
"id": "BioInfer.d167.s0.e3",
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69,
73
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{
"id": "BioInfer.d167.s0.e4",
"type": "Gene",
"text": [
"MET15"
],
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[
36,
41
]
],
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}
] | [] | [] | [
{
"id": "BioInfer.d167.s0.i0",
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"arg2_id": "BioInfer.d167.s0.e1",
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{
"id": "BioInfer.d167.s0.i1",
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"arg2_id": "BioInfer.d167.s0.e2",
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"id": "BioInfer.d167.s0.i2",
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{
"id": "BioInfer.d167.s0.i3",
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"arg2_id": "BioInfer.d167.s0.e4",
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},
{
"id": "BioInfer.d167.s0.i4",
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"id": "BioInfer.d167.s0.i5",
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"arg2_id": "BioInfer.d167.s0.e4",
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}
] |
230 | BioInfer.d168.s0 | [
{
"id": "BioInfer.d168.s0__text",
"type": "Sentence",
"text": [
"Demembranated stereociliary cores consisted primarily of protein bands corresponding to actin and fimbrin and several proteins ranging from 43 to 63 kDa."
],
"offsets": [
[
0,
153
]
]
}
] | [
{
"id": "BioInfer.d168.s0.e0",
"type": "Individual_protein",
"text": [
"fimbrin"
],
"offsets": [
[
98,
105
]
],
"normalized": []
},
{
"id": "BioInfer.d168.s0.e1",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
88,
93
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d168.s0.i0",
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"arg1_id": "BioInfer.d168.s0.e0",
"arg2_id": "BioInfer.d168.s0.e1",
"normalized": []
}
] |
231 | BioInfer.d169.s0 | [
{
"id": "BioInfer.d169.s0__text",
"type": "Sentence",
"text": [
"Depending on the nature of the divalent cation, recombinant plant (birch) profilin exhibited two different modes of interaction with actin, like mammalian profilin."
],
"offsets": [
[
0,
164
]
]
}
] | [
{
"id": "BioInfer.d169.s0.e0",
"type": "Individual_protein",
"text": [
"actin"
],
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133,
138
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s0.e1",
"type": "Individual_protein",
"text": [
"profilin"
],
"offsets": [
[
74,
82
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s0.e2",
"type": "Individual_protein",
"text": [
"profilin"
],
"offsets": [
[
155,
163
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d169.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d169.s0.e0",
"arg2_id": "BioInfer.d169.s0.e1",
"normalized": []
},
{
"id": "BioInfer.d169.s0.i1",
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"arg1_id": "BioInfer.d169.s0.e0",
"arg2_id": "BioInfer.d169.s0.e2",
"normalized": []
}
] |
232 | BioInfer.d169.s1 | [
{
"id": "BioInfer.d169.s1__text",
"type": "Sentence",
"text": [
"In the presence of magnesium ions birch profilin promoted the polymerization of actin from A:Tbeta4."
],
"offsets": [
[
0,
100
]
]
}
] | [
{
"id": "BioInfer.d169.s1.e0",
"type": "Individual_protein",
"text": [
"A"
],
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91,
92
]
],
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},
{
"id": "BioInfer.d169.s1.e1",
"type": "Individual_protein",
"text": [
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],
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80,
85
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s1.e2",
"type": "Individual_protein",
"text": [
"profilin"
],
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40,
48
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s1.e3",
"type": "Individual_protein",
"text": [
"Tbeta4"
],
"offsets": [
[
93,
99
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d169.s1.i0",
"type": "PPI",
"arg1_id": "BioInfer.d169.s1.e0",
"arg2_id": "BioInfer.d169.s1.e1",
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{
"id": "BioInfer.d169.s1.i1",
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"arg2_id": "BioInfer.d169.s1.e3",
"normalized": []
},
{
"id": "BioInfer.d169.s1.i2",
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"arg2_id": "BioInfer.d169.s1.e2",
"normalized": []
},
{
"id": "BioInfer.d169.s1.i3",
"type": "PPI",
"arg1_id": "BioInfer.d169.s1.e1",
"arg2_id": "BioInfer.d169.s1.e3",
"normalized": []
}
] |
233 | BioInfer.d169.s2 | [
{
"id": "BioInfer.d169.s2__text",
"type": "Sentence",
"text": [
"Recombinant plant (birch) profilin was analyzed for its ability to promote actin polymerization from the actin:thymosin beta4 and beta9 complex."
],
"offsets": [
[
0,
144
]
]
}
] | [
{
"id": "BioInfer.d169.s2.e0",
"type": "Individual_protein",
"text": [
"thymosin",
"beta9"
],
"offsets": [
[
111,
119
],
[
130,
135
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s2.e1",
"type": "Individual_protein",
"text": [
"profilin"
],
"offsets": [
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26,
34
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s2.e2",
"type": "Individual_protein",
"text": [
"thymosin beta4"
],
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111,
125
]
],
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},
{
"id": "BioInfer.d169.s2.e3",
"type": "Individual_protein",
"text": [
"actin"
],
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75,
80
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},
{
"id": "BioInfer.d169.s2.e4",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
105,
110
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d169.s2.i0",
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"arg2_id": "BioInfer.d169.s2.e2",
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{
"id": "BioInfer.d169.s2.i1",
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"arg1_id": "BioInfer.d169.s2.e0",
"arg2_id": "BioInfer.d169.s2.e3",
"normalized": []
},
{
"id": "BioInfer.d169.s2.i2",
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"arg2_id": "BioInfer.d169.s2.e4",
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{
"id": "BioInfer.d169.s2.i3",
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"arg1_id": "BioInfer.d169.s2.e1",
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"id": "BioInfer.d169.s2.i4",
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"arg1_id": "BioInfer.d169.s2.e2",
"arg2_id": "BioInfer.d169.s2.e3",
"normalized": []
},
{
"id": "BioInfer.d169.s2.i5",
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"arg1_id": "BioInfer.d169.s2.e2",
"arg2_id": "BioInfer.d169.s2.e4",
"normalized": []
},
{
"id": "BioInfer.d169.s2.i6",
"type": "PPI",
"arg1_id": "BioInfer.d169.s2.e3",
"arg2_id": "BioInfer.d169.s2.e4",
"normalized": []
}
] |
234 | BioInfer.d169.s3 | [
{
"id": "BioInfer.d169.s3__text",
"type": "Sentence",
"text": [
"These data indicated a negative co-operativity between the profilin and DNase I binding sites on actin."
],
"offsets": [
[
0,
103
]
]
}
] | [
{
"id": "BioInfer.d169.s3.e0",
"type": "Individual_protein",
"text": [
"DNase I"
],
"offsets": [
[
72,
79
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s3.e1",
"type": "Individual_protein",
"text": [
"profilin"
],
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59,
67
]
],
"normalized": []
},
{
"id": "BioInfer.d169.s3.e2",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
97,
102
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d169.s3.i0",
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"arg1_id": "BioInfer.d169.s3.e0",
"arg2_id": "BioInfer.d169.s3.e1",
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"id": "BioInfer.d169.s3.i1",
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"id": "BioInfer.d169.s3.i2",
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"arg1_id": "BioInfer.d169.s3.e1",
"arg2_id": "BioInfer.d169.s3.e2",
"normalized": []
}
] |
235 | BioInfer.d170.s0 | [
{
"id": "BioInfer.d170.s0__text",
"type": "Sentence",
"text": [
"Detection of a sequence involved in actin-binding and phosphoinositide-binding in the N-terminal side of cofilin."
],
"offsets": [
[
0,
113
]
]
}
] | [
{
"id": "BioInfer.d170.s0.e0",
"type": "Individual_protein",
"text": [
"actin"
],
"offsets": [
[
36,
41
]
],
"normalized": []
},
{
"id": "BioInfer.d170.s0.e1",
"type": "Individual_protein",
"text": [
"cofilin"
],
"offsets": [
[
105,
112
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d170.s0.i0",
"type": "PPI",
"arg1_id": "BioInfer.d170.s0.e0",
"arg2_id": "BioInfer.d170.s0.e1",
"normalized": []
}
] |
236 | BioInfer.d170.s1 | [
{
"id": "BioInfer.d170.s1__text",
"type": "Sentence",
"text": [
"The truncated cofilin molecules produced in E. coli were purified and examined for their actin-binding and PIP2-binding ability."
],
"offsets": [
[
0,
128
]
]
}
] | [
{
"id": "BioInfer.d170.s1.e0",
"type": "Individual_protein",
"text": [
"actin"
],
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[
89,
94
]
],
"normalized": []
},
{
"id": "BioInfer.d170.s1.e1",
"type": "Individual_protein",
"text": [
"cofilin"
],
"offsets": [
[
14,
21
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "BioInfer.d170.s1.i0",
"type": "PPI",
"arg1_id": "BioInfer.d170.s1.e0",
"arg2_id": "BioInfer.d170.s1.e1",
"normalized": []
}
] |
237 | BioInfer.d171.s0 | [
{
"id": "BioInfer.d171.s0__text",
"type": "Sentence",
"text": [
"Detection of loss of heterozygosity at RAD51, RAD52, RAD54 and BRCA1 and BRCA2 loci in breast cancer: pathological correlations."
],
"offsets": [
[
0,
128
]
]
}
] | [
{
"id": "BioInfer.d171.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"BRCA2"
],
"offsets": [
[
73,
78
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"RAD52"
],
"offsets": [
[
46,
51
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"RAD54"
],
"offsets": [
[
53,
58
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s0.e3",
"type": "Gene/protein/RNA",
"text": [
"RAD51"
],
"offsets": [
[
39,
44
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s0.e4",
"type": "Gene/protein/RNA",
"text": [
"BRCA1"
],
"offsets": [
[
63,
68
]
],
"normalized": []
}
] | [] | [] | [] |
238 | BioInfer.d171.s1 | [
{
"id": "BioInfer.d171.s1__text",
"type": "Sentence",
"text": [
"LOH was found in the RAD51 region in 32% of tumours, in the RAD52 region in 16%, in RAD54 in 20% and in the BRCA1 and BRCA2 regions in 49% and 44% respectively."
],
"offsets": [
[
0,
160
]
]
}
] | [
{
"id": "BioInfer.d171.s1.e0",
"type": "Gene/protein/RNA",
"text": [
"BRCA2"
],
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[
118,
123
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s1.e1",
"type": "Gene/protein/RNA",
"text": [
"RAD52"
],
"offsets": [
[
60,
65
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s1.e2",
"type": "Gene/protein/RNA",
"text": [
"RAD54"
],
"offsets": [
[
84,
89
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s1.e3",
"type": "Gene/protein/RNA",
"text": [
"RAD51"
],
"offsets": [
[
21,
26
]
],
"normalized": []
},
{
"id": "BioInfer.d171.s1.e4",
"type": "Gene/protein/RNA",
"text": [
"BRCA1"
],
"offsets": [
[
108,
113
]
],
"normalized": []
}
] | [] | [] | [] |
239 | BioInfer.d171.s2 | [
{
"id": "BioInfer.d171.s2__text",
"type": "Sentence",
"text": [
"We investigate allelic losses in microsatellites of the RAD51, RAD52, RAD54, BRCA1 and BRCA2 regions, and their correlations with nine pathologic parameters in 127 breast carcinomas."
],
"offsets": [
[
0,
182
]
]
}
] | [
{
"id": "BioInfer.d171.s2.e0",
"type": "Gene/protein/RNA",
"text": [
"BRCA1"
],
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[
77,
82
]
],
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},
{
"id": "BioInfer.d171.s2.e1",
"type": "Gene/protein/RNA",
"text": [
"RAD54"
],
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[
70,
75
]
],
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},
{
"id": "BioInfer.d171.s2.e2",
"type": "Gene/protein/RNA",
"text": [
"RAD51"
],
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[
56,
61
]
],
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},
{
"id": "BioInfer.d171.s2.e3",
"type": "Gene/protein/RNA",
"text": [
"BRCA2"
],
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[
87,
92
]
],
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},
{
"id": "BioInfer.d171.s2.e4",
"type": "Gene/protein/RNA",
"text": [
"RAD52"
],
"offsets": [
[
63,
68
]
],
"normalized": []
}
] | [] | [] | [] |
240 | BioInfer.d172.s0 | [
{
"id": "BioInfer.d172.s0__text",
"type": "Sentence",
"text": [
"Developmental changes in actin and myosin heavy chain isoform expression in smooth muscle."
],
"offsets": [
[
0,
90
]
]
}
] | [
{
"id": "BioInfer.d172.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"myosin heavy chain"
],
"offsets": [
[
35,
53
]
],
"normalized": []
},
{
"id": "BioInfer.d172.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"actin"
],
"offsets": [
[
25,
30
]
],
"normalized": []
}
] | [] | [] | [] |
241 | BioInfer.d173.s0 | [
{
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0,
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242 | BioInfer.d174.s0 | [
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243 | BioInfer.d174.s1 | [
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244 | BioInfer.d175.s0 | [
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],
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0,
113
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] |
245 | BioInfer.d175.s1 | [
{
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0,
168
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17,
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28,
32
]
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}
] | [] | [] | [] |
246 | BioInfer.d177.s0 | [
{
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"type": "Sentence",
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],
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[
0,
149
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]
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] | [
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] |
247 | BioInfer.d178.s0 | [
{
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],
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[
0,
107
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]
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] | [
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64,
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] | [] | [] | [
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] |
248 | BioInfer.d178.s1 | [
{
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"text": [
"We attribute these effects to potential sequestration of actin monomers by profilin, when present in excess."
],
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[
0,
108
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]
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57,
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}
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249 | BioInfer.d179.s0 | [
{
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],
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0,
102
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]
}
] | [
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62,
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{
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{
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"H3"
],
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]
],
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] | [] | [] | [
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] |
250 | BioInfer.d180.s0 | [
{
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],
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[
0,
126
]
]
}
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96,
101
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0,
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120,
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103,
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] |
251 | BioInfer.d181.s0 | [
{
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],
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[
0,
162
]
]
}
] | [
{
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97,
100
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{
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105,
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{
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142,
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}
] | [] | [] | [
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}
] |
252 | BioInfer.d182.s0 | [
{
"id": "BioInfer.d182.s0__text",
"type": "Sentence",
"text": [
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],
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[
0,
132
]
]
}
] | [
{
"id": "BioInfer.d182.s0.e0",
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"text": [
"myosin heavy chain"
],
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[
55,
73
]
],
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},
{
"id": "BioInfer.d182.s0.e1",
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90,
95
]
],
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},
{
"id": "BioInfer.d182.s0.e2",
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75,
88
]
],
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},
{
"id": "BioInfer.d182.s0.e3",
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"text": [
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],
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100,
110
]
],
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}
] | [] | [] | [] |
253 | BioInfer.d183.s0 | [
{
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"type": "Sentence",
"text": [
"Dynamic actin structures stabilized by profilin."
],
"offsets": [
[
0,
48
]
]
}
] | [
{
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{
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],
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39,
47
]
],
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}
] | [] | [] | [
{
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254 | BioInfer.d183.s1 | [
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255 | BioInfer.d183.s2 | [
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256 | BioInfer.d184.s0 | [
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257 | BioInfer.d185.s0 | [
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258 | BioInfer.d186.s0 | [
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259 | BioInfer.d187.s0 | [
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260 | BioInfer.d187.s1 | [
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261 | BioInfer.d187.s2 | [
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262 | BioInfer.d188.s0 | [
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263 | BioInfer.d189.s0 | [
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264 | BioInfer.d190.s0 | [
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265 | BioInfer.d191.s0 | [
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266 | BioInfer.d192.s0 | [
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140
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267 | BioInfer.d193.s0 | [
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268 | BioInfer.d195.s0 | [
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269 | BioInfer.d197.s0 | [
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0,
125
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13,
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270 | BioInfer.d199.s0 | [
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"Exposure of the cells to tumor promoter did, however, result in a loss of actin and talin-rich cell surface elaborations that resemble focal contact precursor structures."
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0,
170
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74,
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84,
89
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271 | BioInfer.d201.s0 | [
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"Expression of actin and myosin heavy chain genes in skeletal, cardiac and uterine muscles of young and old rats."
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0,
112
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24,
42
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272 | BioInfer.d202.s0 | [
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"Expression of alpha-catenin was generally weak and did not correlate with the expression of either beta-catenin or E-cadherin."
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0,
126
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273 | BioInfer.d204.s0 | [
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"Expression of c-Myc or cyclin D1 was sufficient to activate cyclin E-Cdk2 by promoting the formation of high-molecular-weight complexes lacking the cyclin-dependent kinase inhibitor p21, as has been described, following estrogen treatment."
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0,
239
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23,
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60,
68
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148,
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14,
19
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182,
185
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274 | BioInfer.d205.s0 | [
{
"id": "BioInfer.d205.s0__text",
"type": "Sentence",
"text": [
"Expression of E-cadherin, alpha-catenin and beta-catenin in normal ovarian surface epithelium and epithelial ovarian cancers."
],
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[
0,
125
]
]
}
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"id": "BioInfer.d205.s0.e0",
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14,
24
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44,
56
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26,
39
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],
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275 | BioInfer.d207.s0 | [
{
"id": "BioInfer.d207.s0__text",
"type": "Sentence",
"text": [
"Features studied were actin, microtubules, vinculin, and talin, using immunofluorescence, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and immunoblotting; permeability of the cell sheet; wound healing; and phagocytic capacity."
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[
0,
240
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]
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57,
62
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22,
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"vinculin"
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43,
51
]
],
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}
] | [] | [] | [] |
276 | BioInfer.d208.s0 | [
{
"id": "BioInfer.d208.s0__text",
"type": "Sentence",
"text": [
"Finally, both receptors can interact with FADD, TRADD, and RIP."
],
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[
0,
63
]
]
}
] | [
{
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"TRADD"
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48,
53
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59,
62
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{
"id": "BioInfer.d208.s0.e2",
"type": "Gene/protein/RNA",
"text": [
"FADD"
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42,
46
]
],
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}
] | [] | [] | [] |
277 | BioInfer.d208.s1 | [
{
"id": "BioInfer.d208.s1__text",
"type": "Sentence",
"text": [
"Thus, both DR5 and DR4 use FADD, TRADD, and RIP in their signal transduction pathways, and FADD is the common mediator of apoptosis by all known death domain-containing receptors."
],
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[
0,
179
]
]
}
] | [
{
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"DR4"
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19,
22
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44,
47
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33,
38
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11,
14
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{
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27,
31
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91,
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278 | BioInfer.d209.s0 | [
{
"id": "BioInfer.d209.s0__text",
"type": "Sentence",
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"Finally it was shown that the two isoforms of actin can be separated from each other in the absence of profilin also by chromatography on hydroxyapatite."
],
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[
0,
153
]
]
}
] | [
{
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"type": "Gene/protein/RNA",
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46,
51
]
],
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{
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[
103,
111
]
],
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}
] | [] | [] | [] |
279 | BioInfer.d210.s0 | [
{
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"Finally, we evaluated the acetylation of three putative PCAF substrates, histones H3 and H4 and the transcription factor p53, and have determined that histone H3 is significantly preferred over the histone H4 and p53 substrates."
],
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[
0,
228
]
]
}
] | [
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121,
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159,
161
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206,
208
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151,
158
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89,
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56,
60
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82,
84
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73,
81
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198,
205
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},
{
"id": "BioInfer.d210.s0.e9",
"type": "Gene/protein/RNA",
"text": [
"p53"
],
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[
213,
216
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],
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}
] | [] | [] | [
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280 | BioInfer.d212.s0 | [
{
"id": "BioInfer.d212.s0__text",
"type": "Sentence",
"text": [
"First, the C-terminal verprolin-cofilin-acidic domain was shown to be essential for the regulation of actin cytoskeleton."
],
"offsets": [
[
0,
121
]
]
}
] | [
{
"id": "BioInfer.d212.s0.e0",
"type": "Gene/protein/RNA",
"text": [
"cofilin"
],
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[
32,
39
]
],
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},
{
"id": "BioInfer.d212.s0.e1",
"type": "Gene/protein/RNA",
"text": [
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[
22,
31
]
],
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},
{
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"type": "Gene/protein/RNA",
"text": [
"actin"
],
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[
102,
107
]
],
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}
] | [] | [] | [] |
281 | BioInfer.d213.s0 | [
{
"id": "BioInfer.d213.s0__text",
"type": "Sentence",
"text": [
"Fluorescent actin analogs with a high affinity for profilin in vitro exhibit an enhanced gradient of assembly in living cells."
],
"offsets": [
[
0,
126
]
]
}
] | [
{
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12,
17
]
],
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},
{
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"text": [
"profilin"
],
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[
51,
59
]
],
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}
] | [] | [] | [
{
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"arg1_id": "BioInfer.d213.s0.e0",
"arg2_id": "BioInfer.d213.s0.e1",
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}
] |
282 | BioInfer.d213.s1 | [
{
"id": "BioInfer.d213.s1__text",
"type": "Sentence",
"text": [
"Three-dimensional fluorescence microscopy of the fluorescent analog of actin with a high affinity for profilin revealed that it incorporated into cortical cytoplasmic fibers and was also distributed diffusely in the non-cortical cytoplasm consistent with a bias of actin assembly near the surface of the cell."
],
"offsets": [
[
0,
309
]
]
}
] | [
{
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"text": [
"actin"
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71,
76
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],
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},
{
"id": "BioInfer.d213.s1.e1",
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102,
110
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},
{
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"type": "Gene/protein/RNA",
"text": [
"actin"
],
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[
265,
270
]
],
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}
] | [] | [] | [
{
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"arg1_id": "BioInfer.d213.s1.e0",
"arg2_id": "BioInfer.d213.s1.e1",
"normalized": []
}
] |
283 | BioInfer.d213.s2 | [
{
"id": "BioInfer.d213.s2__text",
"type": "Sentence",
"text": [
"To test these models in living cells using imaging techniques, we prepared a new fluorescent analog of actin that bound profilin, a protein that interacts with phosphoinositides and actin-monomers in a mutually exclusive manner, with an order of magnitude greater affinity (Kd = 3.6 microM) than cys-374-labeled actin (Kd > 30 microM), yet retained the ability to inhibit DNase I."
],
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284 | BioInfer.d214.s0 | [
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285 | BioInfer.d214.s1 | [
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0,
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286 | BioInfer.d214.s2 | [
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0,
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105,
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287 | BioInfer.d215.s0 | [
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],
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0,
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288 | BioInfer.d216.s0 | [
{
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],
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0,
182
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289 | BioInfer.d218.s0 | [
{
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"type": "Sentence",
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"From these observations it is concluded that (i) RAD52 is required for high levels of both gene conversions and reciprocal crossovers, (ii) that RAD51 is not required for intrachromosomal crossovers, and (iii) that RAD51 and RAD52 have different functions, or that RAD52 has functions in addition to those of the Rad51/Rad52 protein complex."
],
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0,
341
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]
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215,
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145,
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225,
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313,
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290 | BioInfer.d222.s0 | [
{
"id": "BioInfer.d222.s0__text",
"type": "Sentence",
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],
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[
0,
248
]
]
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62,
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291 | BioInfer.d223.s0 | [
{
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0,
189
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143,
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292 | BioInfer.d224.s0 | [
{
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0,
181
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41,
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122,
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177,
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293 | BioInfer.d225.s0 | [
{
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0,
261
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]
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78,
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69,
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}
] |
294 | BioInfer.d226.s0 | [
{
"id": "BioInfer.d226.s0__text",
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"Further, we show that talin, a high molecular weight structural protein that links integrins to the actin cytoskeleton, is proteolytically cleaved in fetal, but not in neonatal melanocytes."
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0,
189
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]
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] | [
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83,
92
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100,
105
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22,
27
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}
] |
295 | BioInfer.d226.s1 | [
{
"id": "BioInfer.d226.s1__text",
"type": "Sentence",
"text": [
"Immunofluorescence microscopy of cells grown on fibronectin confirmed the presence of paxillin, talin, and vinculin at the ends of actin stress fibers at presumptive focal contacts in melanocytes."
],
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[
0,
196
]
]
}
] | [
{
"id": "BioInfer.d226.s1.e0",
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131,
136
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},
{
"id": "BioInfer.d226.s1.e1",
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107,
115
]
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},
{
"id": "BioInfer.d226.s1.e2",
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48,
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{
"id": "BioInfer.d226.s1.e3",
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86,
94
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"id": "BioInfer.d226.s1.e4",
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96,
101
]
],
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}
] | [] | [] | [
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}
] |
296 | BioInfer.d227.s0 | [
{
"id": "BioInfer.d227.s0__text",
"type": "Sentence",
"text": [
"Fusiform RPE, however, were not deficient in these proteins, expressing amounts of N-cadherin, alpha-catenin, beta-catenin, plakoglobin, p120, alpha-actinin and vinculin that were equivalent to epithelioid cells."
],
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[
0,
212
]
]
}
] | [
{
"id": "BioInfer.d227.s0.e0",
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143,
156
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],
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},
{
"id": "BioInfer.d227.s0.e1",
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161,
169
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],
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},
{
"id": "BioInfer.d227.s0.e2",
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124,
135
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],
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},
{
"id": "BioInfer.d227.s0.e3",
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137,
141
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},
{
"id": "BioInfer.d227.s0.e4",
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95,
108
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},
{
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110,
122
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},
{
"id": "BioInfer.d227.s0.e6",
"type": "Gene/protein/RNA",
"text": [
"N-cadherin"
],
"offsets": [
[
83,
93
]
],
"normalized": []
}
] | [] | [] | [] |
297 | BioInfer.d229.s0 | [
{
"id": "BioInfer.d229.s0__text",
"type": "Sentence",
"text": [
"Gel electrophoresis was used to measure changes in the relative amounts of actin or myosin and of myosin heavy chain (MHC) isoforms."
],
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[
0,
132
]
]
}
] | [
{
"id": "BioInfer.d229.s0.e0",
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75,
80
]
],
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},
{
"id": "BioInfer.d229.s0.e1",
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98,
116
]
],
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},
{
"id": "BioInfer.d229.s0.e2",
"type": "Gene/protein/RNA",
"text": [
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84,
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],
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},
{
"id": "BioInfer.d229.s0.e3",
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"MHC"
],
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[
118,
121
]
],
"normalized": []
}
] | [] | [] | [] |
298 | BioInfer.d230.s0 | [
{
"id": "BioInfer.d230.s0__text",
"type": "Sentence",
"text": [
"Generation of these membrane microparticles was dependent on the presence of extracellular calcium and was accompanied by proteolytic degradation of the cytoskeletal proteins, actin binding protein (ABP), talin, and myosin heavy chain."
],
"offsets": [
[
0,
235
]
]
}
] | [
{
"id": "BioInfer.d230.s0.e0",
"type": "Protein_family_or_group",
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],
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176,
197
]
],
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},
{
"id": "BioInfer.d230.s0.e1",
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216,
234
]
],
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},
{
"id": "BioInfer.d230.s0.e2",
"type": "Gene/protein/RNA",
"text": [
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205,
210
]
],
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},
{
"id": "BioInfer.d230.s0.e3",
"type": "Protein_family_or_group",
"text": [
"ABP"
],
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[
199,
202
]
],
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}
] | [] | [] | [] |
299 | BioInfer.d232.s0 | [
{
"id": "BioInfer.d232.s0__text",
"type": "Sentence",
"text": [
"Genetic dissection of Drosophila myofibril formation: effects of actin and myosin heavy chain null alleles."
],
"offsets": [
[
0,
107
]
]
}
] | [
{
"id": "BioInfer.d232.s0.e0",
"type": "Gene/protein/RNA",
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65,
70
]
],
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},
{
"id": "BioInfer.d232.s0.e1",
"type": "Gene/protein/RNA",
"text": [
"myosin heavy chain"
],
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[
75,
93
]
],
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}
] | [] | [] | [] |