Datasets:

bigbio
/

ncbi_disease

Languages:

English

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Cannot get the config names for the dataset.

Error code:   ConfigNamesError
Exception:    ImportError
Message:      To be able to use bigbio/ncbi_disease, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
                  config_names = get_dataset_config_names(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
                  dataset_module = dataset_module_factory(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
                  raise e1 from None
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
                  return HubDatasetModuleFactoryWithScript(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
                  local_imports = _download_additional_modules(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
                  raise ImportError(
              ImportError: To be able to use bigbio/ncbi_disease, you need to install the following dependency: bioc.
              Please install it using 'pip install bioc' for instance.

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Dataset Card for NCBI Disease

The NCBI disease corpus is fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.

Citation Information

@article{Dogan2014NCBIDC,
    title        = {NCBI disease corpus: A resource for disease name recognition and concept normalization},
    author       = {Rezarta Islamaj Dogan and Robert Leaman and Zhiyong Lu},
    year         = 2014,
    journal      = {Journal of biomedical informatics},
    volume       = 47,
    pages        = {1--10}
}