Datasets:

imageomics
/

Heliconius-Collection_Cambridge-Butterfly

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README-supplemental.md CHANGED Viewed

@@ -1,4 +1,4 @@
-# Summary of Deduplication of Jiggins Data
 We explored our downloaded images in `notebooks/EDA-DL-0-3.ipynb`, and established the following causes of duplication along with remedies:
 1. The "patch" record (record 3477891) which required alignment in `notebooks/Data-gen-1-1.ipynb`, resulting in `metadata/Jiggins_Zenodo_Img_Master_3477891Patch.csv` used for download, is a duplication of all listed records. Additionally, it introduced extra copies of 4 images with incorrect labels for their views (i.e., dorsal vs ventral).

+# Summary of Deduplication
 We explored our downloaded images in `notebooks/EDA-DL-0-3.ipynb`, and established the following causes of duplication along with remedies:
 1. The "patch" record (record 3477891) which required alignment in `notebooks/Data-gen-1-1.ipynb`, resulting in `metadata/Jiggins_Zenodo_Img_Master_3477891Patch.csv` used for download, is a duplication of all listed records. Additionally, it introduced extra copies of 4 images with incorrect labels for their views (i.e., dorsal vs ventral).

README.md CHANGED Viewed

@@ -17,6 +17,7 @@ tags:
 - cross types
 - wild
 - lab-bred
 pretty_name: Heliconius Collection (Cambridge Butterfly)
 size_categories:
 - 10K<n<100K
@@ -26,15 +27,15 @@ configs:
 - config_name: full_master
   data_files:
   - split: train
-    path: Jiggins_Zenodo_Img_Master.csv
 - config_name: heliconius
   data_files:
   - split: train
-    path: Jiggins_Heliconius_Master.csv
 - config_name: dorsal
   data_files:
   - split: train
-    path: Jiggins_Zenodo_dorsal_Img_Master.csv
 ---
 # Dataset Card for Heliconius Collection (Cambridge Butterfly)
@@ -60,6 +61,8 @@ Please note that the [EarthCape Database](https://heliconius.ecdb.io/Occurrence_
 Both dorsal and ventral images available. Contains primarily separated wings, with some whole butterfly images. There is variation in image content (whitestandard, background color, etc. based on the needs of the project).
 <!---
 This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
 --->
@@ -74,11 +77,11 @@ English, Latin
 ## Dataset Structure
-* **Jiggins_Zenodo_Img_Master.csv:** Information for the approximately 36,000 unprocessed image files included in the Jiggins Heliconius Collection. Image types are `jpg`, `raw` (.CR2) and `tif`. `genus`, `species`, and `subspecies` are included columns.
-* **Jiggins_Zenodo_dorsal_Img_Master.csv:** Subset of 17,748 images from `Jiggins_Zenodo_Img_Master.csv` with a dorsal view of the butterflies (note that some have both dorsal and ventral). This subset includes 11,746 unique specimens. Image types and columns are the same as for the Master file.
-* **Jiggins_Heliconius_Master.csv:** The 29,134-image subset of all Heliconius images from `Jiggins_Zenodo_Img_Master.csv`. This subset includes 10,086 unique specimens. Image types and columns are the same as for the Master file.
 **Notes:**
@@ -95,7 +98,7 @@ English, Latin
 ### Data Instances
-`Jiggins_Heliconius_Master.csv` contains multiple species of Heliconius (including erato and melpomene), most are labeled down to the subspecies level. The `Jiggins_Zenodo_Img_Master.csv` also contains species from other genera, with just over half labeled to the subspecies level (these are predominantly Heliconius subspecies).
 Detached wings in four quadrants (generally). Many include a label indicating the specimen ID (`CAMID`). There is variation in formatting both across and within records, but overall setup is relatively consistent.
 Some subspecies may be photographed differently, needs segmentation preprocessing.
@@ -150,9 +153,10 @@ CSV Columns are as follows:
 - `filename`: Unique filename assigned to image at download (`<X>_<Image_name>.<jpg/tif/CR2>`) using `scripts/download_jiggins_subset.py`.
 - `filepath`: Filepath of the downloaded image (`<image_folder>/<Taxonomic_Name>/<filename>`) using `scripts/download_jiggins_subset.py`.
 - `md5`: MD5 of the downloaded image. This was used as the measure of uniqueness (at the pixel level) to address duplication of images across Zenodo records.
 **Note:**
- - `Jiggins_Zenodo_dorsal_Img_Master.csv` also has a column `CAM_dupe` indicating whether the `CAMID` has multiple images of the same file type within this subset. Most (11,446) specimens have only one dorsal image per file type.
     - `CAMID`s are necessarily duplicated for the images that are of just a dorsal forewing or hindwing, so we label those as `single_wing`. There are one RAW and one JPG image for each single wing. None of these are Heliconius butterflies.
     - Instances of both dorsal and ventral wings in the same image are labeled `both-wings`; there are 18 such images, all of Heliconius butterflies.
     - There are multiple JPG images with the same `CAMID`. Note that this does not necessarily mean these are duplicates of the same images; check the views to confirm. There are also JPG copies provided alongside RAW images. Generally, RAW images will be unique up to `View`, as there is only one CAMID with two RAW images that aren't of just a single wing.
@@ -169,6 +173,8 @@ CSV Columns are as follows:
 The Butterfly Genetics Group has a large collection of butterfly images distributed across 31 Zenodo records. They do not all have the same information, and it is sometimes only provided in the record, but not the metadata. With this collection, we combine the provided information (metadata) into a shared format that is easily ingested into ML pipelines. We also add some other labels of interest (based on identification determined by the Butterfly Genetics Group), and endeavor to remove duplication, noting potential points of duplication and providing some assessment tools to help prevent data leakage. This de-duplication effort reduced the overall dataset to covering only 29 of these records, and it is documented in the `deduplication_process` directory.
 Additionally, these datasets are prepared in a format that allows for easy integration with the Imageomics Institute's [Data Dashboard](https://huggingface.co/spaces/imageomics/dashboard-prototype) for distribution statistics and easy sampling of images by taxonomic information and view.
 ### Source Data
@@ -184,6 +190,7 @@ The [original Master file](https://huggingface.co/datasets/imageomics/Heliconius
 These images are of a mix of wild-caught and lab-bred butterflies, classified by the Butterfly Genetics Group.
 ### Personal and Sensitive Information
@@ -216,6 +223,7 @@ Please see [`README-supplemental.md`](https://huggingface.co/datasets/imageomics
 **This Collection:**
 * Christopher Lawrence (Princeton University) - ORCID: 0000-0002-3846-5968
 * Elizabeth G. Campolongo (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0846-2413
 ### Licensing Information
@@ -225,9 +233,9 @@ Images can be matched to their source record through the `zenodo_link` or `recor
 ### Citation Information
-Christopher Lawrence and Elizabeth G. Campolongo. (2024). Heliconius Collection (Cambridge Butterfly). Hugging Face. https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly.
-If you use this compilation, please cite the original datasets compiled by the Butterfly Genetics Group at University of Cambridge (bibtex citations for all 29 included Zenodo records are in [`jiggins.bib`](https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly/blob/main/metadata/jiggins.bib)) as well as this curated subset.
 ### Contributions

 - cross types
 - wild
 - lab-bred
+- mimic groups
 pretty_name: Heliconius Collection (Cambridge Butterfly)
 size_categories:
 - 10K<n<100K
 - config_name: full_master
   data_files:
   - split: train
+    path: img_master.csv
 - config_name: heliconius
   data_files:
   - split: train
+    path: Heliconius_img_master.csv
 - config_name: dorsal
   data_files:
   - split: train
+    path: dorsal_img_master.csv
 ---
 # Dataset Card for Heliconius Collection (Cambridge Butterfly)
 Both dorsal and ventral images available. Contains primarily separated wings, with some whole butterfly images. There is variation in image content (whitestandard, background color, etc. based on the needs of the project).
+Additionally, we added image-level Heliconius subspecies mimic group information to the entries. The two subspecies in this dataset that exhibit polymorphic mimicry (_Heliconius doris ssp. doris_ and _Heliconius melpomene ssp. martinae_) were labeled based on the specimen images (all mimicry groups are accurate for the images).
 <!---
 This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
 --->
 ## Dataset Structure
+* **img_master.csv:** Information for the approximately 36,000 unprocessed image files included in the Jiggins Heliconius Collection. Image types are `jpg`, `raw` (.CR2) and `tif`. `genus`, `species`, and `subspecies` are included columns.
+* **dorsal_img_master.csv:** Subset of 17,748 images from `img_master.csv` with a dorsal view of the butterflies (note that some have both dorsal and ventral). This subset includes 11,746 unique specimens. Image types and columns are the same as for the Master file.
+* **Heliconius_img_master.csv:** The 29,134-image subset of all Heliconius images from `img_master.csv`. This subset includes 10,086 unique specimens. Image types and columns are the same as for the Master file.
 **Notes:**
 ### Data Instances
+`Heliconius_img_master.csv` contains multiple species of Heliconius (including erato and melpomene), most are labeled down to the subspecies level. The `img_master.csv` also contains species from other genera, with just over half labeled to the subspecies level (these are predominantly Heliconius subspecies).
 Detached wings in four quadrants (generally). Many include a label indicating the specimen ID (`CAMID`). There is variation in formatting both across and within records, but overall setup is relatively consistent.
 Some subspecies may be photographed differently, needs segmentation preprocessing.
 - `filename`: Unique filename assigned to image at download (`<X>_<Image_name>.<jpg/tif/CR2>`) using `scripts/download_jiggins_subset.py`.
 - `filepath`: Filepath of the downloaded image (`<image_folder>/<Taxonomic_Name>/<filename>`) using `scripts/download_jiggins_subset.py`.
 - `md5`: MD5 of the downloaded image. This was used as the measure of uniqueness (at the pixel level) to address duplication of images across Zenodo records.
+- `mimic_group`: Mimicry group of the subspecies; only included for Heliconius subspecies. Polymorphic subspecies (_Heliconius doris ssp. doris_ and _Heliconius melpomene ssp. martinae_) are labeled based on the specimen images.
 **Note:**
+ - `dorsal_img_master.csv` also has a column `CAM_dupe` indicating whether the `CAMID` has multiple images of the same file type within this subset. Most (11,446) specimens have only one dorsal image per file type.
     - `CAMID`s are necessarily duplicated for the images that are of just a dorsal forewing or hindwing, so we label those as `single_wing`. There are one RAW and one JPG image for each single wing. None of these are Heliconius butterflies.
     - Instances of both dorsal and ventral wings in the same image are labeled `both-wings`; there are 18 such images, all of Heliconius butterflies.
     - There are multiple JPG images with the same `CAMID`. Note that this does not necessarily mean these are duplicates of the same images; check the views to confirm. There are also JPG copies provided alongside RAW images. Generally, RAW images will be unique up to `View`, as there is only one CAMID with two RAW images that aren't of just a single wing.
 The Butterfly Genetics Group has a large collection of butterfly images distributed across 31 Zenodo records. They do not all have the same information, and it is sometimes only provided in the record, but not the metadata. With this collection, we combine the provided information (metadata) into a shared format that is easily ingested into ML pipelines. We also add some other labels of interest (based on identification determined by the Butterfly Genetics Group), and endeavor to remove duplication, noting potential points of duplication and providing some assessment tools to help prevent data leakage. This de-duplication effort reduced the overall dataset to covering only 29 of these records, and it is documented in the `deduplication_process` directory.
+We added image-level Heliconius subspecies mimic group information to further our ability to study mimicry with ML; they also can help provide context or another layer of analysis for mistaken mimic predictions.
 Additionally, these datasets are prepared in a format that allows for easy integration with the Imageomics Institute's [Data Dashboard](https://huggingface.co/spaces/imageomics/dashboard-prototype) for distribution statistics and easy sampling of images by taxonomic information and view.
 ### Source Data
 These images are of a mix of wild-caught and lab-bred butterflies, classified by the Butterfly Genetics Group.
+Mimicry group labels were provided by [Neil Rosser](https://scholar.google.com/citations?user=bKyzoi0AAAAJ&hl=en) and added programmatically in [`notebooks/Data-gen-1-3.ipynb`](https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly/blob/main/notebooks/Data-gen-1-3.ipynb). The two Heliconius subspecies in this dataset that exhibit polymorphic mimicry (_Heliconius doris ssp. doris_ and _Heliconius melpomene ssp. martinae_) were given the `mimic_group` label for those particular specimens.
 ### Personal and Sensitive Information
 **This Collection:**
 * Christopher Lawrence (Princeton University) - ORCID: 0000-0002-3846-5968
 * Elizabeth G. Campolongo (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0846-2413
+* Neil Rosser (Harvard University) - ORCID: 0000-0001-7796-2548
 ### Licensing Information
 ### Citation Information
+Christopher Lawrence, Elizabeth G. Campolongo, and Neil Rosser. (2024). Heliconius Collection (Cambridge Butterfly). Hugging Face. https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly. [Add updated DOI for mimic group update].
+If you use this compilation, please also cite the original datasets compiled by the Butterfly Genetics Group at University of Cambridge (bibtex citations for all 29 included Zenodo records are in [`jiggins.bib`](https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly/blob/main/metadata/jiggins.bib)) as well as this curated subset.
 ### Contributions

Jiggins_Zenodo_dorsal_Img_Master.csv → dorsal_img_master.csv RENAMED Viewed

The diff for this file is too large to render. See raw diff

Jiggins_Zenodo_Img_Master.csv → img_master.csv RENAMED Viewed

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metadata/heliconius_mimic_groups.csv ADDED Viewed

	@@ -0,0 +1,75 @@

+subspecies,group1,group2_if_polymorphic,group3_if_polymorphic,
+cythera,cyrbia,,,
+cyrbia,cyrbia,,,
+venus,postman,,,
+vulcanus,dennis_rayed,,,
+chestertonii,chestertonii,,,
+lativitta,dennis_rayed,,,
+malleti,dennis_rayed,,,
+erato,postman,,,
+ssp.nov.P,dennis_rayed,,,
+melpomene,postman,,,
+willmotti,dennis_rayed,,,
+eleuchia,cydnides,,,
+cydnides,cydnides,,,
+weymeri,chestertonii,,,
+chioneus,chioneus,,,
+demophoon,postman_yellowbar,,,
+hydara,postman,,,
+sapho,chioneus,,,
+numata,superioris,,,
+wallacei,blue_yellow,,,
+rosina,postman_yellowbar,,,
+formosus,zuleika,,,
+bicoloratus,bicoloratus,,,
+euphrasius,messene,,,
+alithea,cydnides,,,
+timareta,dennis_rayed,,,
+plesseni,plesseni,,,
+notabilis,notabilis,,,
+amaryllis,postman_yellowbar,,,
+thelxinoe,dennis_rayed,,,
+doris,blue_yellow,dennis_rayed,green,
+aglaope,dennis_rayed,,,
+eleusinus,leuce,,,
+ecuadorensis,dennis_rayed,,,
+congener,blue_yellow,,,
+etylus,dennis_rayed,,,
+lenaeus,tarapotensis,,,
+petiverana,postman_yellowbar,,,
+melicerta,silvana,,,
+thelxiopeia,dennis_rayed,,,
+meriana,dennis_rayed,,,
+sara,blue_yellow,,,
+silvana,silvana,,,
+amalfreda,dennis_rayed,,,
+flavescens,blue_yellow,,,
+nanna,postman_yellowbar,,,
+phyllis,postman_yellowbar,,,
+tristero,postman_yellowbar,,,
+dignus,postman_yellowbar,,,
+bellula,postman_yellowbar,,,
+napoensis,dennis_rayed,,,
+clysonymus,inverse_postman,,,
+sotericus,telesiphe,,,
+primularis,cydnides,,,
+sprucei,blue_yellow,,,
+bassleri,charithonia,,,
+eximius,longarena,,,
+hygiana,inverse_postman,,,
+neildi,dennis_rayed,,,
+hierax,inverse_postman,,,
+magdalena,blue_yellow,,,
+zelinde,leuce,,,
+florencia,dennis_rayed,,,
+weymeri f. gustavi,chestertonii,,,
+weymeri f. weymeri,chestertonii,,,
+wanningeri,cydnides,,,
+cydno,cydnides,,,
+cordula,leuce,,,
+linaresi,leuce,,,
+lisethae,cydnides,,,
+hermogenes,Elzunia,,,
+martinae,postman,postman_yellowbar,,
+vicina,dennis_rayed,,,
+reductimacula,dennis_rayed,,,

metadata/polymorphic_specimens.csv ADDED Viewed

	@@ -0,0 +1,38 @@

+CAMID,X,Image_name,View,zenodo_name,zenodo_link,Sequence,Taxonomic_Name,Locality,Sample_accession,Collected_by,Other_ID,Date,Dataset,Store,Brood,Death_Date,Cross_Type,Stage,Sex,Unit_Type,file_type,record_number,species,subspecies,genus,file_url,hybrid_stat,filename,filepath,md5,CAM_dupe,mimic_group,mimic_group_2,mimic_group_3
+CAM008645,25319,8645d.jpg,dorsal,Heliconius_wing_old_photos_2001_2019_part1.csv,https://zenodo.org/record/2552371,"8,645",Heliconius doris ssp. doris,"Tarapoto-Yurinaguas (Km28),",,,,21/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 117,,,,,Female,wild,jpg,2552371,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2552371/files/8645d.jpg,non-hybrid,25319_8645d.jpg,images/Heliconius doris ssp. doris/25319_8645d.jpg,04855c3df0e4dc8c224d2a526eb709ad,TRUE,blue_yellow,,
+CAM008645,9623,CAM008645_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,645",Heliconius doris ssp. doris,"Tarapoto-Yurinaguas (Km28),",,,,21/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 117,,,,,Female,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008645_d.JPG,non-hybrid,9623_CAM008645_d.JPG,images/Heliconius doris ssp. doris/9623_CAM008645_d.JPG,5c1d540289909f446828705eaf809173,TRUE,blue_yellow,,
+CAM008646,9625,CAM008646_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,646",Heliconius doris ssp. doris,"Tarapoto-Yurinaguas (Km28),",,,,21/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 117,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008646_d.JPG,non-hybrid,9625_CAM008646_d.JPG,images/Heliconius doris ssp. doris/9625_CAM008646_d.JPG,17e7d7c1a64484fb7d69ab2984f8b440,FALSE,blue_yellow,,
+CAM008647,9627,CAM008647_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,647",Heliconius doris ssp. doris,"Tarapoto-Yurinaguas (Km28),",,,,21/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 117,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008647_d.JPG,non-hybrid,9627_CAM008647_d.JPG,images/Heliconius doris ssp. doris/9627_CAM008647_d.JPG,8df1e9c8c2294b8e4ad0e87fc4726891,FALSE,blue_yellow,,
+CAM008652,9637,CAM008652_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,652",Heliconius doris ssp. doris,"Tarapoto-Yurinaguas (Km28),",,,,21/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 117,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008652_d.JPG,non-hybrid,9637_CAM008652_d.JPG,images/Heliconius doris ssp. doris/9637_CAM008652_d.JPG,97f2db963c1445623fedf40d64b7865e,FALSE,blue_yellow,,
+CAM008684,9696,CAM008684_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,684",Heliconius doris ssp. doris,"Pongo de Cainarache - Baranquita, Km 7.2,",ERS977668,,,22/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 133,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008684_d.JPG,non-hybrid,9696_CAM008684_d.JPG,images/Heliconius doris ssp. doris/9696_CAM008684_d.JPG,15e60d2adb07dc7bc2358a1e03d38436,FALSE,blue_yellow,,
+CAM008685,9698,CAM008685_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,685",Heliconius doris ssp. doris,"Pongo de Cainarache - Baranquita, Km 7.2,",,,,22/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 133,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008685_d.JPG,non-hybrid,9698_CAM008685_d.JPG,images/Heliconius doris ssp. doris/9698_CAM008685_d.JPG,c71ebd4555f00596f86d92db7d402751,FALSE,blue_yellow,,
+CAM008686,9700,CAM008686_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,686",Heliconius doris ssp. doris,"Pongo de Cainarache - Baranquita, Km 7.2,",,,,22/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 133,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008686_d.JPG,non-hybrid,9700_CAM008686_d.JPG,images/Heliconius doris ssp. doris/9700_CAM008686_d.JPG,02bae54848ffe57ed02028080a83c824,FALSE,blue_yellow,,
+CAM008697,9722,CAM008697_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,697",Heliconius doris ssp. doris,"Tarapoto-Yurimaguas (Km 78),",ERS977669,,,23/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 133,,,,,Male,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008697_d.JPG,non-hybrid,9722_CAM008697_d.JPG,images/Heliconius doris ssp. doris/9722_CAM008697_d.JPG,3ca4feb71ed6b0b497f13e84222b95e1,FALSE,dennis_rayed,,
+CAM008734,9795,CAM008734_d.JPG,dorsal,CAM.coll.images.batch6.csv,https://zenodo.org/record/2686762,"8,734",Heliconius doris ssp. doris,"Tarapoto, Rio Shilcayo,",,,,25/08/2002,Heliconiine Butterfly Collection Records from University of Cambridge,Box 133,,,,,Unknown,wild,jpg,2686762,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2686762/files/CAM008734_d.JPG,non-hybrid,9795_CAM008734_d.JPG,images/Heliconius doris ssp. doris/9795_CAM008734_d.JPG,79341086009425b92efcc2c6b17e6a17,FALSE,blue_yellow,,
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+CAM040922,13483,CAM040922_d.JPG,dorsal,CAM.coll.images.batch9.csv,https://zenodo.org/record/2714333,"40,922",Heliconius doris ssp. doris,Bilsa Biological Station,,,,07/09/2017,Heliconiine Butterfly Collection Records from University of Cambridge,Box 176,,,,,Male,wild,jpg,2714333,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2714333/files/CAM040922_d.JPG,non-hybrid,13483_CAM040922_d.JPG,images/Heliconius doris ssp. doris/13483_CAM040922_d.JPG,664cb8cd2cd3019456a4cc2efdb66e0f,FALSE,blue_yellow,,
+CAM040923,13485,CAM040923_d.JPG,dorsal,CAM.coll.images.batch9.csv,https://zenodo.org/record/2714333,"40,923",Heliconius doris ssp. doris,Bilsa Biological Station,,,,07/09/2017,Heliconiine Butterfly Collection Records from University of Cambridge,Box 176,,,,,Male,wild,jpg,2714333,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2714333/files/CAM040923_d.JPG,non-hybrid,13485_CAM040923_d.JPG,images/Heliconius doris ssp. doris/13485_CAM040923_d.JPG,66033f4d969adc685b1db7780ac2ff4b,FALSE,blue_yellow,,
+CAM040924,13487,CAM040924_d.JPG,dorsal,CAM.coll.images.batch9.csv,https://zenodo.org/record/2714333,"40,924",Heliconius doris ssp. doris,Herrera to Bilsa 1,,,,07/09/2017,Heliconiine Butterfly Collection Records from University of Cambridge,Box 176,,,,,Male,wild,jpg,2714333,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2714333/files/CAM040924_d.JPG,non-hybrid,13487_CAM040924_d.JPG,images/Heliconius doris ssp. doris/13487_CAM040924_d.JPG,1bb26e602780ef80cb098225761395ea,FALSE,blue_yellow,,
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+CAM040931,13501,CAM040931_d.JPG,dorsal,CAM.coll.images.batch9.csv,https://zenodo.org/record/2714333,"40,931",Heliconius doris ssp. doris,Herrera to Bilsa 1,,,,07/09/2017,Heliconiine Butterfly Collection Records from University of Cambridge,Box 176,,,,,Male,wild,jpg,2714333,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2714333/files/CAM040931_d.JPG,non-hybrid,13501_CAM040931_d.JPG,images/Heliconius doris ssp. doris/13501_CAM040931_d.JPG,895b8e6d1eab659271e9557663da9134,FALSE,blue_yellow,,
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+CAM041059,13757,CAM041059_d.JPG,dorsal,CAM.coll.images.batch9.csv,https://zenodo.org/record/2714333,"41,059",Heliconius doris ssp. doris,Road to Shalcana,,,,,Heliconiine Butterfly Collection Records from University of Cambridge,Box 178,,,,,Female,wild,jpg,2714333,Heliconius doris,doris,Heliconius,https://zenodo.org/record/2714333/files/CAM041059_d.JPG,non-hybrid,13757_CAM041059_d.JPG,images/Heliconius doris ssp. doris/13757_CAM041059_d.JPG,14eabb2a4ad0c7e2f0879eece8fcd9e9,FALSE,blue_yellow,,
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notebooks/Data-gen-1-3.ipynb ADDED Viewed

	@@ -0,0 +1,1445 @@

+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Add Mimicry Group Information for Heliconius Species\n",
+    "\n",
+    "This notebook will add mimicry group information for the Heliconius species (at the subspecies level) included in this dataset."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Load in master CSVs and Heliconius mimicry group csvs."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Master CSVs\n",
+    "full_df = pd.read_csv(\"../Jiggins_Zenodo_Img_Master.csv\", low_memory = False)\n",
+    "dorsal_df = pd.read_csv(\"../Jiggins_Zenodo_dorsal_Img_Master.csv\", low_memory = False)\n",
+    "heli_df = pd.read_csv(\"../Jiggins_Heliconius_Master.csv\", low_memory = False)\n",
+    "\n",
+    "# Heliconius Mimicry Group CSV\n",
+    "mimic_gp_df = pd.read_csv(\"../metadata/heliconius_mimic_groups.csv\", low_memory = False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "Index(['CAMID', 'X', 'Image_name', 'View', 'zenodo_name', 'zenodo_link',\n",
+       "       'Sequence', 'Taxonomic_Name', 'Locality', 'Sample_accession',\n",
+       "       'Collected_by', 'Other_ID', 'Date', 'Dataset', 'Store', 'Brood',\n",
+       "       'Death_Date', 'Cross_Type', 'Stage', 'Sex', 'Unit_Type', 'file_type',\n",
+       "       'record_number', 'species', 'subspecies', 'genus', 'file_url',\n",
+       "       'hybrid_stat', 'filename', 'filepath', 'md5'],\n",
+       "      dtype='object')"
+      ]
+     },
+     "execution_count": 3,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_df.columns"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "First, we need to fix a typo found in the subspecies (\"clysonomus\" should be \"clysonymus\")."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "136"
+      ]
+     },
+     "execution_count": 4,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonymus\"].shape[0]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>CAMID</th>\n",
+       "      <th>X</th>\n",
+       "      <th>Image_name</th>\n",
+       "      <th>View</th>\n",
+       "      <th>zenodo_name</th>\n",
+       "      <th>zenodo_link</th>\n",
+       "      <th>Sequence</th>\n",
+       "      <th>Taxonomic_Name</th>\n",
+       "      <th>Locality</th>\n",
+       "      <th>Sample_accession</th>\n",
+       "      <th>...</th>\n",
+       "      <th>file_type</th>\n",
+       "      <th>record_number</th>\n",
+       "      <th>species</th>\n",
+       "      <th>subspecies</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>file_url</th>\n",
+       "      <th>hybrid_stat</th>\n",
+       "      <th>filename</th>\n",
+       "      <th>filepath</th>\n",
+       "      <th>md5</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>24962</th>\n",
+       "      <td>CAM041233</td>\n",
+       "      <td>14103</td>\n",
+       "      <td>CAM041233_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,233</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14103_CAM041233_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>2236af310ed7d7027cbec678a636b5ee</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24963</th>\n",
+       "      <td>CAM041233</td>\n",
+       "      <td>14104</td>\n",
+       "      <td>CAM041233_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,233</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14104_CAM041233_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>d45a9ef82f9cd4646c4ea51e266b2814</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24964</th>\n",
+       "      <td>CAM041234</td>\n",
+       "      <td>14105</td>\n",
+       "      <td>CAM041234_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,234</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14105_CAM041234_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>2c19b958ad77e448d7ad2ad41273bb65</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24965</th>\n",
+       "      <td>CAM041234</td>\n",
+       "      <td>14106</td>\n",
+       "      <td>CAM041234_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,234</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14106_CAM041234_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>8249c142e90bda050accab7e59e9821d</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24966</th>\n",
+       "      <td>CAM041235</td>\n",
+       "      <td>14107</td>\n",
+       "      <td>CAM041235_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,235</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14107_CAM041235_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>a988e503bbe0404e07c89405c05e0f9d</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24967</th>\n",
+       "      <td>CAM041235</td>\n",
+       "      <td>14108</td>\n",
+       "      <td>CAM041235_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,235</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14108_CAM041235_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>495869bf772c8d4d95b07620d3e3c6dd</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24968</th>\n",
+       "      <td>CAM041236</td>\n",
+       "      <td>14109</td>\n",
+       "      <td>CAM041236_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,236</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14109_CAM041236_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>15f796491b44543453b6f7ce0311c9dc</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>24969</th>\n",
+       "      <td>CAM041236</td>\n",
+       "      <td>14110</td>\n",
+       "      <td>CAM041236_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,236</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Wild Sumaco Hummingbird Trail</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14110_CAM041236_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>20684478a650287e49f64675deb80ed6</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25055</th>\n",
+       "      <td>CAM041280</td>\n",
+       "      <td>14196</td>\n",
+       "      <td>CAM041280_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,280</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14196_CAM041280_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>9363c286d5fb4790b99fd2bc2fe8aaad</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25056</th>\n",
+       "      <td>CAM041280</td>\n",
+       "      <td>14197</td>\n",
+       "      <td>CAM041280_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,280</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14197_CAM041280_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>9085c0f1bb0230d7ccc9089f1a299aed</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25057</th>\n",
+       "      <td>CAM041281</td>\n",
+       "      <td>14198</td>\n",
+       "      <td>CAM041281_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,281</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14198_CAM041281_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>d371321547ec020347275e7b89cf6af2</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25058</th>\n",
+       "      <td>CAM041281</td>\n",
+       "      <td>14199</td>\n",
+       "      <td>CAM041281_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,281</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14199_CAM041281_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>13e5a78afa77e0b1fb238377600fc9b8</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25059</th>\n",
+       "      <td>CAM041282</td>\n",
+       "      <td>14201</td>\n",
+       "      <td>CAM041282_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,282</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14201_CAM041282_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>922f2db6299e004bcb09906f99c038ba</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25060</th>\n",
+       "      <td>CAM041282</td>\n",
+       "      <td>14200</td>\n",
+       "      <td>CAM041282_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,282</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14200_CAM041282_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>8b40ba830d38f9f4061a63a854c86404</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25061</th>\n",
+       "      <td>CAM041283</td>\n",
+       "      <td>14203</td>\n",
+       "      <td>CAM041283_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,283</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14203_CAM041283_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>349520a30aee4bb098789b0b24d0a288</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25062</th>\n",
+       "      <td>CAM041283</td>\n",
+       "      <td>14202</td>\n",
+       "      <td>CAM041283_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,283</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14202_CAM041283_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>810791d8777381676724cbee09f4c9b6</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25063</th>\n",
+       "      <td>CAM041284</td>\n",
+       "      <td>14204</td>\n",
+       "      <td>CAM041284_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,284</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14204_CAM041284_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>040da0a338a3318baef1de8f275912dd</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25064</th>\n",
+       "      <td>CAM041284</td>\n",
+       "      <td>14205</td>\n",
+       "      <td>CAM041284_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,284</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14205_CAM041284_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>955d38ec86c457378e8b9e1a8a3776f8</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25065</th>\n",
+       "      <td>CAM041285</td>\n",
+       "      <td>14206</td>\n",
+       "      <td>CAM041285_d.JPG</td>\n",
+       "      <td>dorsal</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,285</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14206_CAM041285_d.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>2af97a0ad748065aecc88dfa1649c51c</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>25066</th>\n",
+       "      <td>CAM041285</td>\n",
+       "      <td>14207</td>\n",
+       "      <td>CAM041285_v.JPG</td>\n",
+       "      <td>ventral</td>\n",
+       "      <td>CAM.coll.images.batch9.csv</td>\n",
+       "      <td>https://zenodo.org/record/2714333</td>\n",
+       "      <td>41,285</td>\n",
+       "      <td>Heliconius clysonomus ssp. clysonomus</td>\n",
+       "      <td>Reventador road</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>...</td>\n",
+       "      <td>jpg</td>\n",
+       "      <td>2714333</td>\n",
+       "      <td>Heliconius clysonomus</td>\n",
+       "      <td>clysonomus</td>\n",
+       "      <td>Heliconius</td>\n",
+       "      <td>https://zenodo.org/record/2714333/files/CAM041...</td>\n",
+       "      <td>non-hybrid</td>\n",
+       "      <td>14207_CAM041285_v.JPG</td>\n",
+       "      <td>images/Heliconius clysonomus ssp. clysonomus/1...</td>\n",
+       "      <td>24acf462d66c712f3be5aab7f1c85b6e</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "<p>20 rows × 31 columns</p>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "           CAMID      X       Image_name     View                 zenodo_name  \\\n",
+       "24962  CAM041233  14103  CAM041233_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "24963  CAM041233  14104  CAM041233_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "24964  CAM041234  14105  CAM041234_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "24965  CAM041234  14106  CAM041234_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "24966  CAM041235  14107  CAM041235_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "24967  CAM041235  14108  CAM041235_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "24968  CAM041236  14109  CAM041236_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "24969  CAM041236  14110  CAM041236_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25055  CAM041280  14196  CAM041280_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25056  CAM041280  14197  CAM041280_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25057  CAM041281  14198  CAM041281_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25058  CAM041281  14199  CAM041281_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25059  CAM041282  14201  CAM041282_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25060  CAM041282  14200  CAM041282_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25061  CAM041283  14203  CAM041283_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25062  CAM041283  14202  CAM041283_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25063  CAM041284  14204  CAM041284_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25064  CAM041284  14205  CAM041284_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "25065  CAM041285  14206  CAM041285_d.JPG   dorsal  CAM.coll.images.batch9.csv   \n",
+       "25066  CAM041285  14207  CAM041285_v.JPG  ventral  CAM.coll.images.batch9.csv   \n",
+       "\n",
+       "                             zenodo_link Sequence  \\\n",
+       "24962  https://zenodo.org/record/2714333   41,233   \n",
+       "24963  https://zenodo.org/record/2714333   41,233   \n",
+       "24964  https://zenodo.org/record/2714333   41,234   \n",
+       "24965  https://zenodo.org/record/2714333   41,234   \n",
+       "24966  https://zenodo.org/record/2714333   41,235   \n",
+       "24967  https://zenodo.org/record/2714333   41,235   \n",
+       "24968  https://zenodo.org/record/2714333   41,236   \n",
+       "24969  https://zenodo.org/record/2714333   41,236   \n",
+       "25055  https://zenodo.org/record/2714333   41,280   \n",
+       "25056  https://zenodo.org/record/2714333   41,280   \n",
+       "25057  https://zenodo.org/record/2714333   41,281   \n",
+       "25058  https://zenodo.org/record/2714333   41,281   \n",
+       "25059  https://zenodo.org/record/2714333   41,282   \n",
+       "25060  https://zenodo.org/record/2714333   41,282   \n",
+       "25061  https://zenodo.org/record/2714333   41,283   \n",
+       "25062  https://zenodo.org/record/2714333   41,283   \n",
+       "25063  https://zenodo.org/record/2714333   41,284   \n",
+       "25064  https://zenodo.org/record/2714333   41,284   \n",
+       "25065  https://zenodo.org/record/2714333   41,285   \n",
+       "25066  https://zenodo.org/record/2714333   41,285   \n",
+       "\n",
+       "                              Taxonomic_Name                       Locality  \\\n",
+       "24962  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24963  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24964  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24965  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24966  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24967  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24968  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "24969  Heliconius clysonomus ssp. clysonomus  Wild Sumaco Hummingbird Trail   \n",
+       "25055  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25056  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25057  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25058  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25059  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25060  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25061  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25062  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25063  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25064  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25065  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "25066  Heliconius clysonomus ssp. clysonomus                Reventador road   \n",
+       "\n",
+       "      Sample_accession  ... file_type record_number                species  \\\n",
+       "24962              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24963              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24964              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24965              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24966              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24967              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24968              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "24969              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25055              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25056              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25057              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25058              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25059              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25060              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25061              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25062              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25063              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25064              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25065              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "25066              NaN  ...       jpg       2714333  Heliconius clysonomus   \n",
+       "\n",
+       "       subspecies       genus  \\\n",
+       "24962  clysonomus  Heliconius   \n",
+       "24963  clysonomus  Heliconius   \n",
+       "24964  clysonomus  Heliconius   \n",
+       "24965  clysonomus  Heliconius   \n",
+       "24966  clysonomus  Heliconius   \n",
+       "24967  clysonomus  Heliconius   \n",
+       "24968  clysonomus  Heliconius   \n",
+       "24969  clysonomus  Heliconius   \n",
+       "25055  clysonomus  Heliconius   \n",
+       "25056  clysonomus  Heliconius   \n",
+       "25057  clysonomus  Heliconius   \n",
+       "25058  clysonomus  Heliconius   \n",
+       "25059  clysonomus  Heliconius   \n",
+       "25060  clysonomus  Heliconius   \n",
+       "25061  clysonomus  Heliconius   \n",
+       "25062  clysonomus  Heliconius   \n",
+       "25063  clysonomus  Heliconius   \n",
+       "25064  clysonomus  Heliconius   \n",
+       "25065  clysonomus  Heliconius   \n",
+       "25066  clysonomus  Heliconius   \n",
+       "\n",
+       "                                                file_url hybrid_stat  \\\n",
+       "24962  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24963  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24964  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24965  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24966  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24967  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24968  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "24969  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25055  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25056  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25057  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25058  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25059  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25060  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25061  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25062  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25063  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25064  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25065  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "25066  https://zenodo.org/record/2714333/files/CAM041...  non-hybrid   \n",
+       "\n",
+       "                    filename  \\\n",
+       "24962  14103_CAM041233_d.JPG   \n",
+       "24963  14104_CAM041233_v.JPG   \n",
+       "24964  14105_CAM041234_d.JPG   \n",
+       "24965  14106_CAM041234_v.JPG   \n",
+       "24966  14107_CAM041235_d.JPG   \n",
+       "24967  14108_CAM041235_v.JPG   \n",
+       "24968  14109_CAM041236_d.JPG   \n",
+       "24969  14110_CAM041236_v.JPG   \n",
+       "25055  14196_CAM041280_d.JPG   \n",
+       "25056  14197_CAM041280_v.JPG   \n",
+       "25057  14198_CAM041281_d.JPG   \n",
+       "25058  14199_CAM041281_v.JPG   \n",
+       "25059  14201_CAM041282_v.JPG   \n",
+       "25060  14200_CAM041282_d.JPG   \n",
+       "25061  14203_CAM041283_v.JPG   \n",
+       "25062  14202_CAM041283_d.JPG   \n",
+       "25063  14204_CAM041284_d.JPG   \n",
+       "25064  14205_CAM041284_v.JPG   \n",
+       "25065  14206_CAM041285_d.JPG   \n",
+       "25066  14207_CAM041285_v.JPG   \n",
+       "\n",
+       "                                                filepath  \\\n",
+       "24962  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24963  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24964  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24965  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24966  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24967  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24968  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "24969  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25055  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25056  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25057  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25058  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25059  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25060  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25061  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25062  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25063  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25064  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25065  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "25066  images/Heliconius clysonomus ssp. clysonomus/1...   \n",
+       "\n",
+       "                                    md5  \n",
+       "24962  2236af310ed7d7027cbec678a636b5ee  \n",
+       "24963  d45a9ef82f9cd4646c4ea51e266b2814  \n",
+       "24964  2c19b958ad77e448d7ad2ad41273bb65  \n",
+       "24965  8249c142e90bda050accab7e59e9821d  \n",
+       "24966  a988e503bbe0404e07c89405c05e0f9d  \n",
+       "24967  495869bf772c8d4d95b07620d3e3c6dd  \n",
+       "24968  15f796491b44543453b6f7ce0311c9dc  \n",
+       "24969  20684478a650287e49f64675deb80ed6  \n",
+       "25055  9363c286d5fb4790b99fd2bc2fe8aaad  \n",
+       "25056  9085c0f1bb0230d7ccc9089f1a299aed  \n",
+       "25057  d371321547ec020347275e7b89cf6af2  \n",
+       "25058  13e5a78afa77e0b1fb238377600fc9b8  \n",
+       "25059  922f2db6299e004bcb09906f99c038ba  \n",
+       "25060  8b40ba830d38f9f4061a63a854c86404  \n",
+       "25061  349520a30aee4bb098789b0b24d0a288  \n",
+       "25062  810791d8777381676724cbee09f4c9b6  \n",
+       "25063  040da0a338a3318baef1de8f275912dd  \n",
+       "25064  955d38ec86c457378e8b9e1a8a3776f8  \n",
+       "25065  2af97a0ad748065aecc88dfa1649c51c  \n",
+       "25066  24acf462d66c712f3be5aab7f1c85b6e  \n",
+       "\n",
+       "[20 rows x 31 columns]"
+      ]
+     },
+     "execution_count": 5,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for x in list(full_df.loc[full_df[\"subspecies\"] == \"clysonomus\", \"X\"]):\n",
+    "    filepath = full_df.loc[full_df[\"X\"] == x, \"filepath\"].values[0]\n",
+    "    full_df.loc[full_df[\"X\"] == x, \"filepath\"] = filepath.replace(\"clysonomus\", \"clysonymus\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "filepath\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14103_CAM041233_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14104_CAM041233_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14206_CAM041285_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14205_CAM041284_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14204_CAM041284_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14202_CAM041283_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14203_CAM041283_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14200_CAM041282_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14201_CAM041282_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14199_CAM041281_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14198_CAM041281_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14197_CAM041280_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14196_CAM041280_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14110_CAM041236_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14109_CAM041236_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14108_CAM041235_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14107_CAM041235_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14106_CAM041234_v.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14105_CAM041234_d.JPG    1\n",
+       "images/Heliconius clysonymus ssp. clysonymus/14207_CAM041285_v.JPG    1\n",
+       "Name: count, dtype: int64"
+      ]
+     },
+     "execution_count": 7,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\", \"filepath\"].value_counts()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\", \"Taxonomic_Name\"] = \"Heliconius clysonymus ssp. clysonymus\"\n",
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\", \"species\"] = \"Heliconius clysonymus\"\n",
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\", \"subspecies\"] = \"clysonymus\""
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 9,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>CAMID</th>\n",
+       "      <th>X</th>\n",
+       "      <th>Image_name</th>\n",
+       "      <th>View</th>\n",
+       "      <th>zenodo_name</th>\n",
+       "      <th>zenodo_link</th>\n",
+       "      <th>Sequence</th>\n",
+       "      <th>Taxonomic_Name</th>\n",
+       "      <th>Locality</th>\n",
+       "      <th>Sample_accession</th>\n",
+       "      <th>...</th>\n",
+       "      <th>file_type</th>\n",
+       "      <th>record_number</th>\n",
+       "      <th>species</th>\n",
+       "      <th>subspecies</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>file_url</th>\n",
+       "      <th>hybrid_stat</th>\n",
+       "      <th>filename</th>\n",
+       "      <th>filepath</th>\n",
+       "      <th>md5</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "<p>0 rows × 31 columns</p>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "Empty DataFrame\n",
+       "Columns: [CAMID, X, Image_name, View, zenodo_name, zenodo_link, Sequence, Taxonomic_Name, Locality, Sample_accession, Collected_by, Other_ID, Date, Dataset, Store, Brood, Death_Date, Cross_Type, Stage, Sex, Unit_Type, file_type, record_number, species, subspecies, genus, file_url, hybrid_stat, filename, filepath, md5]\n",
+       "Index: []\n",
+       "\n",
+       "[0 rows x 31 columns]"
+      ]
+     },
+     "execution_count": 9,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonomus\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "species\n",
+      "Heliconius clysonymus    156\n",
+      "Name: count, dtype: int64\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "Taxonomic_Name\n",
+       "Heliconius clysonymus ssp. clysonymus    156\n",
+       "Name: count, dtype: int64"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "print(full_df.loc[full_df[\"subspecies\"] == \"clysonymus\", \"species\"].value_counts())\n",
+    "full_df.loc[full_df[\"subspecies\"] == \"clysonymus\", \"Taxonomic_Name\"].value_counts()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Great, all fixed! Need to do the same for the other two CSVs."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 11,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_list = [full_df, heli_df, dorsal_df]\n",
+    "col_list = [\"filepath\", \"Taxonomic_Name\", \"species\", \"subspecies\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "typos:  0\n",
+      "actual:  156\n",
+      "typos:  20\n",
+      "actual:  136\n",
+      "typos:  10\n",
+      "actual:  68\n"
+     ]
+    }
+   ],
+   "source": [
+    "for df in df_list:\n",
+    "    print(\"typos: \", df.loc[df[\"subspecies\"] == \"clysonomus\"].shape[0])\n",
+    "    print(\"actual: \", df.loc[df[\"subspecies\"] == \"clysonymus\"].shape[0])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 13,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def fix_clysonymus(df):\n",
+    "    df = df.copy()\n",
+    "    for x in list(df.loc[df[\"subspecies\"] == \"clysonomus\", \"X\"]):\n",
+    "        for col in col_list:\n",
+    "            col_val = df.loc[df[\"X\"] == x, col].values[0]\n",
+    "            df.loc[df[\"X\"] == x, col] = col_val.replace(\"clysonomus\", \"clysonymus\")\n",
+    "    return df"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 14,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_df_fixed = fix_clysonymus(full_df)\n",
+    "heli_df_fixed = fix_clysonymus(heli_df)\n",
+    "dorsal_df_fixed = fix_clysonymus(dorsal_df)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "actual:  ['Heliconius clysonymus ssp. clysonymus']\n",
+      "actual:  ['Heliconius clysonymus']\n",
+      "actual:  ['clysonymus']\n",
+      "actual:  ['Heliconius clysonymus ssp. clysonymus']\n",
+      "actual:  ['Heliconius clysonymus']\n",
+      "actual:  ['clysonymus']\n",
+      "actual:  ['Heliconius clysonymus ssp. clysonymus']\n",
+      "actual:  ['Heliconius clysonymus']\n",
+      "actual:  ['clysonymus']\n"
+     ]
+    }
+   ],
+   "source": [
+    "for df in df_list:\n",
+    "    for col in col_list[1:]:\n",
+    "        print(\"actual: \", df.loc[df[\"subspecies\"] == \"clysonymus\", col].unique())"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 16,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for df in df_list:\n",
+    "    for filepath in list(df.loc[df[\"subspecies\"] == \"clysonymus\", \"filepath\"].unique()):\n",
+    "        if \"clysonomus\" in filepath:\n",
+    "            print(\"missed a typo\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Save Fixed CSVs"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 17,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_df_fixed.to_csv(\"../Jiggins_Zenodo_Img_Master.csv\",index = False)\n",
+    "dorsal_df_fixed.to_csv(\"../Jiggins_Zenodo_dorsal_Img_Master.csv\", index = False)\n",
+    "heli_df_fixed.to_csv(\"../Jiggins_Heliconius_Master.csv\", index = False)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Get Mimic Groups"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 18,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>subspecies</th>\n",
+       "      <th>group1</th>\n",
+       "      <th>group2_if_polymorphic</th>\n",
+       "      <th>group3_if_polymorphic</th>\n",
+       "      <th>Unnamed: 4</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>cythera</td>\n",
+       "      <td>cyrbia</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>cyrbia</td>\n",
+       "      <td>cyrbia</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>venus</td>\n",
+       "      <td>postman</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>vulcanus</td>\n",
+       "      <td>dennis_rayed</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>chestertonii</td>\n",
+       "      <td>chestertonii</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "     subspecies        group1 group2_if_polymorphic group3_if_polymorphic  \\\n",
+       "0       cythera        cyrbia                   NaN                   NaN   \n",
+       "1        cyrbia        cyrbia                   NaN                   NaN   \n",
+       "2         venus       postman                   NaN                   NaN   \n",
+       "3      vulcanus  dennis_rayed                   NaN                   NaN   \n",
+       "4  chestertonii  chestertonii                   NaN                   NaN   \n",
+       "\n",
+       "   Unnamed: 4  \n",
+       "0         NaN  \n",
+       "1         NaN  \n",
+       "2         NaN  \n",
+       "3         NaN  \n",
+       "4         NaN  "
+      ]
+     },
+     "execution_count": 18,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "mimic_gp_df.head()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 19,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def add_mimic_group(df):\n",
+    "    df = df.copy()\n",
+    "    for subspecies in list(df.subspecies.dropna().unique()):\n",
+    "        if subspecies in list(mimic_gp_df.subspecies.unique()):\n",
+    "            temp_mimic = mimic_gp_df.loc[mimic_gp_df[\"subspecies\"] == subspecies]\n",
+    "            df.loc[df[\"subspecies\"] == subspecies, \"mimic_group\"] = temp_mimic[\"group1\"].values[0]\n",
+    "            if temp_mimic[\"group2_if_polymorphic\"] is not None:\n",
+    "                df.loc[df[\"subspecies\"] == subspecies, \"mimic_group_2\"] = temp_mimic[\"group2_if_polymorphic\"].values[0]\n",
+    "                if temp_mimic[\"group3_if_polymorphic\"] is not None:\n",
+    "                    df.loc[df[\"subspecies\"] == subspecies, \"mimic_group_3\"] = temp_mimic[\"group3_if_polymorphic\"].values[0]\n",
+    "    return df"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 20,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_df_mimic_gp = add_mimic_group(full_df_fixed)\n",
+    "heli_df_mimic_gp = add_mimic_group(heli_df_fixed)\n",
+    "dorsal_df_mimic_gp = add_mimic_group(dorsal_df_fixed)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 21,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "mimic_group :  22\n",
+      "mimic_group\n",
+      "dennis_rayed         7031\n",
+      "cyrbia               2164\n",
+      "postman_yellowbar    1368\n",
+      "postman              1236\n",
+      "notabilis             617\n",
+      "plesseni              500\n",
+      "blue_yellow           473\n",
+      "cydnides              304\n",
+      "chioneus              239\n",
+      "chestertonii          185\n",
+      "inverse_postman       176\n",
+      "telesiphe              72\n",
+      "leuce                  70\n",
+      "bicoloratus            34\n",
+      "Elzunia                18\n",
+      "charithonia            12\n",
+      "superioris             10\n",
+      "silvana                 9\n",
+      "messene                 6\n",
+      "tarapotensis            4\n",
+      "longarena               4\n",
+      "zuleika                 2\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_2 :  2\n",
+      "mimic_group_2\n",
+      "dennis_rayed         72\n",
+      "postman_yellowbar     2\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_3 :  1\n",
+      "mimic_group_3\n",
+      "green    72\n",
+      "Name: count, dtype: int64\n",
+      "\n",
+      "mimic_group :  22\n",
+      "mimic_group\n",
+      "dennis_rayed         7031\n",
+      "cyrbia               2164\n",
+      "postman_yellowbar    1368\n",
+      "postman              1236\n",
+      "notabilis             617\n",
+      "plesseni              500\n",
+      "blue_yellow           473\n",
+      "cydnides              304\n",
+      "chioneus              239\n",
+      "chestertonii          185\n",
+      "inverse_postman       176\n",
+      "telesiphe              72\n",
+      "leuce                  70\n",
+      "bicoloratus            34\n",
+      "Elzunia                18\n",
+      "charithonia            12\n",
+      "superioris             10\n",
+      "silvana                 9\n",
+      "messene                 6\n",
+      "tarapotensis            4\n",
+      "longarena               4\n",
+      "zuleika                 2\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_2 :  2\n",
+      "mimic_group_2\n",
+      "dennis_rayed         72\n",
+      "postman_yellowbar     2\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_3 :  1\n",
+      "mimic_group_3\n",
+      "green    72\n",
+      "Name: count, dtype: int64\n",
+      "\n",
+      "mimic_group :  22\n",
+      "mimic_group\n",
+      "dennis_rayed         3150\n",
+      "cyrbia               1085\n",
+      "postman_yellowbar     681\n",
+      "postman               619\n",
+      "notabilis             310\n",
+      "plesseni              251\n",
+      "blue_yellow           240\n",
+      "cydnides              153\n",
+      "chioneus              120\n",
+      "chestertonii           92\n",
+      "inverse_postman        88\n",
+      "telesiphe              36\n",
+      "leuce                  35\n",
+      "bicoloratus            17\n",
+      "Elzunia                 9\n",
+      "charithonia             6\n",
+      "superioris              5\n",
+      "silvana                 4\n",
+      "messene                 3\n",
+      "tarapotensis            2\n",
+      "longarena               2\n",
+      "zuleika                 1\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_2 :  2\n",
+      "mimic_group_2\n",
+      "dennis_rayed         36\n",
+      "postman_yellowbar     1\n",
+      "Name: count, dtype: int64\n",
+      "mimic_group_3 :  1\n",
+      "mimic_group_3\n",
+      "green    36\n",
+      "Name: count, dtype: int64\n",
+      "\n"
+     ]
+    }
+   ],
+   "source": [
+    "for df in [full_df_mimic_gp, heli_df_mimic_gp, dorsal_df_mimic_gp]:\n",
+    "    for col in [\"mimic_group\", \"mimic_group_2\", \"mimic_group_3\"]:\n",
+    "        print(col, \": \", df[col].nunique())\n",
+    "        print(df[col].value_counts())\n",
+    "    print()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Save Mimic Group CSVs"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 22,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_df_mimic_gp.to_csv(\"../Jiggins_Zenodo_Img_Master.csv\",index = False)\n",
+    "dorsal_df_mimic_gp.to_csv(\"../Jiggins_Zenodo_dorsal_Img_Master.csv\", index = False)\n",
+    "heli_df_mimic_gp.to_csv(\"../Jiggins_Heliconius_Master.csv\", index = False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "std",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}