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Huber (2019), ZSIN | AAATTTTTGGAGCAGCTTTCAAATCATTGTTTGGAGGAATGTCCTGGTTCTCACAAATTCTCATTGGAACGTTGCTGATGTGGTTGGGCCTGAACACAAAGAATGGATCTATTTCCCTTATGTGCTTGGCCTTAGGGGGAGTGTTGATCTTCTTATCCACAGCCGTCTCTGCTGATGTGGGGTGCTCGGTGGACTTCTCAAAGAAGGAAACGAGATGCGGTACAGGGGTGTTCGTCTATAACGACGTTGAAGCCTGGAGGGACAGGTACAAGTACCATCCTGACTCCCCCCGTAGATTGGCAGCAGCAGTCAAGCAAGCCTGGGAAGATGGTATCTGTGGGATCTCCTCTGTTTCAAGAATGGAAAACATCATGTGGAGATCAGTAGAAGGGGAGCTCAACGCAATCCTGGAAGAAAATGGAGTTCAACTGACGGTCGTTGTGGGATCTGTAAAAAACCCCATGTGGAGAGGTCCACAGAGACTGCCCGTGCCTGTGAACGAGCTGCCCCACGGCTGGAAGGCTTGGGGGAAATCGTACTTCGTCAGAGCAGCAAAGACAAATAACAGCTTTGTCGTGGATGGTGACACACTGAAGGAAT | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GAATCAGACTGCGACAGTTCGAGTTTGAAGCGAAAGCTAGCAACAGTATCAACAGGTTTTATTTTGGATTTGGAAACGAGAGTTTCTGGTCATGAAAAACCCAAAAAAGAAATCCGGAGGATTCCGGATTGTCAATATGCTAAAACGCGGAGTAGCCCGTGTGAGCCCCTTTGGGGGCTTGAAGAGGCTGCCAGCCGGACTTCTGCTGGGTCATGGGCCCATCAGGATGGTCTTGGCGATTCTAGCCTTTTTGAGGTTCACGGCAATCAAGCCATCACTGGGTCTCATCAATAGATGGGGTTCAGTGGGGAAAAAAGAGGCTATGGAAATAATAAAGAAGTTCAAGAAAGATCTGGCTGCCATGCTGAGAATAATCAATGCTAGGAAGGAGAAGAAGAGACGAGGCGCAGATACTAGTGTCGGAATTGTTGGCCTCCTGCTGACCACAGCTATGGCAGCGGAGGTCACTAGACGTGGGAGTGCATACTATATGTACTTGGACAGAAGCGATGCTGGGGAGGCCATATCTTTTCCAACCACACTGGGGATGAATAAGTGTTATATACAGATCATGGATCTTGGACACATGTGTGATGCCAC | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CTTGCATCCTGGAGCTGGGAAAACCAGGAGAGTTCTTCCTGAAATAGTCCGTGAAGCCATAAAAACAAGACTCCGTACTGTGATCTTAGCTCCAACTAGGGTTGTCGCTGCTGAAATGGAGGAAGCCCTTAGAGGGCTTCCAGTGCGTTATATGACAACAGCAGTCAATGTCACCCACTCTGGGACAGAAATCGTTGACTTAATGTGCCATGCCACCTTCACTTCACGTCTACTACAGCCAATCAGAGTCCCCAACTATAATCTGTATATTATGGATGAGGCCCACTTCACAGATCCCTCAAGTATAGCAGCAAGAGGATACATTTCAACAAGGGTTGAGATGGGCGAGGCGGCTGCCATCTTCATGACCGCCACGCCACCAGGAACCCGTGACGCATTTCCGGACTCCAACTCACCAATTATGGACACCGAAGTGGAAGTCCCGGAGAGAGCCTGGAGCTCAGGCTTTGATTGGGTGACGGACCATTCTGGAAAAACAGTTTGGTTTGTTCCAAGCGTGAGGAACGGCAATGAGATCGCAGCTTGTCTGACGAAGGCTGGAAAACGGGTCATACAGCTCAGCAGAAAGACTTTTGAGAC | [
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] | viral_gRNA | Huber, 2019 in virion |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGAGGATATGGAGATCGACGACGAGTTAGTATGGATCCATCCGGACAGTTGCCTGAAGGGAAGAAAGGGATTCAGTACTACAAAAGGAAAGTTGTATTCGTACTTTGAAGGCACCAAATTCCATCAAGCAGCAAAAGATATGGCGGAGATAAAGGTCCTGTTCCCAAATGACCAGGAAAGCAACGAGCAACTGTGTGCCTACATATTGGGGGAGACCATGGAAGCAATCCGCGAAAAATGCCCGGTCGACCACAACCCGTCGTCTAGCCCGCCAAAAACGCTGCCGTGCCTCTGCATGTATGCCATGACGCCAGAAAGGGTCCACAGACTCAGAAGCAACAACGTCAAAGAAGTTACAGTATGCTCCTCCACCCCCCTTCCAAAGTACAAAATCAAGAACGTTCAGAAGGTTCAGTGCACAAAAGTAGTCCTGTTTAACCCGCATACCCCTGCATTCGTTCCCGCCCGTAAGTACATAGAAGCGCCAGAACAGCCTGCAGCTCCGCCTGCACAGGCCGAGGAGGCCCCCGAAGTTGCAGCAACACCAACACCACCTGCAGCTGATAACACCTCGCTTGATGTCACGGACATCTCACTGGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGAACGTCCTACTGACCCGTACGGAGGACCGTATCGTGTGGAAAACACTAGCCGGCGATCCATGGATAAAAACACTGACGGCCAAGTATCCTGGGAATTTCACTGCCACGATAGAGGAATGGCAAGCAGAGCATGAGGCCATCATGAGGCACATCTTGGAGAGACCGGACCCTACCGACGTATTCCAGAATAAGGCGAACGTGTGTTGGGCCAAGGCCTTGGTGCCGGTACTGAAAACTGCAGGCATAGATATGACCACTGAACAATGGAACACTGTGGATTATTTCGAAACGGACAAAGCTCACTCAGCAGAGATAGTACTGAACCAACTATGCGTTAGGTTCTTTGGACTCGACCTGGATTCCGGTCTATTTTCTGCACCCACTGTTCCGTTATCCATTAGGAATAATCACTGGGATAATTCCCCGTCGCCTAACATGTACGGGCTGAATAAAGAAGTGGTCCGTCAGCTCTCCCGCAGGTACCCACGACTGCCTCGAGCAGTTGCTACTGGAAGAGTCTATGACATGAACACCGGCGCACTGTGCAACTATGATCCGCGCATAAATCTAGTACCAGTGAACAGAAGACTGCCTCATG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTGATGTCACGGACATCTCACTGGACATGGAAGACAGTAGCGAAGGCTCACTCTTTTCGAGCTTTAGCGGATCGGACAACTCTATTACTAGTATGGACAGTTGGTCGTCAGGACCTAGTTCACTAGAGATAGTAGACCGAAGGCAGGTGGTGGTGGCTGACGTCCATGCCGTCCAAGAGCCTGCCCCTGTTCCACCGCCAAGGCTAAAGAAGATGGCCCGCCTGGCAGCGGCAAGAATGCAGGAAGAGCCAACTCCACCGGCAAGCACCAGCTCTGCGGACGAGTCCCTTCACCTTTCTTTTGGTGGGGTATCCATGTCCTTCGGATCCCTTTTCGACGGAGAGATGGCCCGCTTGGCAGCGGCACAACCCCCGGCAAGTACATGCCCTACGGATGTGCCTATGTCTTTCGGATCGTTTTCCGACGGAGAGATTGAGGAGCTGAGCCGCAGAGTAACCGAGTCTGAGCCCGTCCTGTTTGGGTCATTTGAACCGGGCGAAGTGAACTCAATTATATCGTCCCGATCAGCCGTATCTTTTCCACCACGCAAGCAGAGACGTAGACGCAGGAGCAGGAGGACCGAATACTGACTAACCGGGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGGACCGAATACTGACTAACCGGGGTAGGTGGGTACATATTTTCGACGGACACAGGCCCTGGGCACTTGCAAAAGAAGTCCGTTCTGCAGAACCAGCTTACAGAACCGACCTTGGAGCGCAATGTTCTGGAAAGAATCTACGCCCCGGTGCTCGACACGTCGAAAGAGGAACAGCTCAAACTCAGGTACCAGATGATGCCCACCGAAGCCAACAAAAGCAGGTACCAGTCTAGAAAAGTAGAAAATCAGAAAGCCATAACCACTGAGCGACTGCTTTCAGGGCTACGACTGTATAACTCTGCCACAGATCAGCCAGAATGCTATAAGATCACCTACCCGAAACCATCGTATTCCAGCAGTGTACCGGCGAACTACTCTGACCCAAAGTTTGCTGTAGCTGTTTGCAACAACTATCTGCATGAGAATTACCCGACGGTAGCATCTTATCAGATCACCGACGAGTACGATGCTTACTTGGATATGGTAGACGGGACAGTCGCTTGCCTAGATACTGCAACTTTTTGCCCCGCCAAGCTTAGAAGTTACCCGAAAAGACACGAGTATAGAGCCCCAAACATCCGCAGTGCGGTTCCATCAGCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CATCCGCAGTGCGGTTCCATCAGCGATGCAGAACACGTTGCAAAACGTGCTCATTGCCGCGACTAAAAGAAACTGCAACGTCACACAAATGCGTGAATTGCCAACACTGGACTCAGCGACATTCAACGTTGAATGCTTTCGAAAATATGCATGTAATGACGAGTATTGGGAGGAGTTTGCCCGAAAGCCAATTAGGATCACTACTGAGTTCGTTACCGCATACGTGGCCAGACTGAAAGGCCCTAAGGCCGCCGCACTGTTCGCAAAGACGCATAATTTGGTCCCATTGCAAGAAGTGCCTATGGATAGGTTCGTCATGGACATGAAAAGAGACGTGAAAGTTACACCTGGCACGAAACACACAGAAGAAAGACCGAAAGTACAAGTGATACAAGCCGCAGAACCCCTGGCGACCGCTTACCTGTGCGGGATCCACCGGGAGTTAGTGCGCAGGCTTACAGCCGTCTTGCTACCCAACATTCACACGCTTTTTGACATGTCGGCGGAGGACTTTGATGCAATCATAGCAGAACACTTCAAGCAAGGTGACCCGGTACTGGAGACGGATATCGCCTCGTTCGACAAAAGCCAAGACGACGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGTTCGACAAAAGCCAAGACGACGCTATGGCGTTAACTGGCCTGATGATCTTGGAAGACCTGGGTGTGGACCAACCACTACTCGACTTGATCGAGTGCGCCTTTGGAGAAATATCATCCACCCATCTGCCCACGGGTACCCGTTTCAAATTCGGGGCGATGATGAAATCCGGAATGTTCCTCACGCTCTTTGTCAACACAGTTCTGAATGTCGTTATCGCCAGCAGAGTATTGGAGGAGCGGCTTAAAACGTCCAAATGTGCAGCATTTATCGGCGACGACAACATCATACACGGAGTAGTATCTGACAAAGAAATGGCTGAGAGGTGTGCCACCTGGCTCAACATGGAGGTTAAGATCATTGACGCAGTCATCGGCGAGAGACCGCCTTACTTCTGCGGTGGATTCATCTTGCAAGATTCGGTTACCTCCACAGCGTGTCGCGTGGCGGACCCCTTGAAAAGGCTGTTTAAGTTGGGTAAACCGCTCCCAGCCGACGACGAGCAAGACGAAGACAGAAGACGCGCTCTGCTAGATGAAACAAAGGCGTGGTTTAGAGTAGGTATAACAGACACCTTAGCAGTGGCCGTGGCAACTCGGT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTAGCAGTGGCCGTGGCAACTCGGTATGAGGTAGACAACATCACACCTGTCCTGCTGGCATTGAGAACTTTTGCCCAGAGCAAAAGAGCATTTCAAGCCATCAGAGGGGAAATAAAGCATCTCTACGGTGGTCCTAAATAGTCAGCATAGCACATTTCATCTGACTAATACCACAACACCACCACCATGAATAGAGGATTCTTTAACATGCTCGGCCGCCGCCCCTTCCCGGCCCCCACTGCCATGTGGAGGCCGCGGAGAAGGAGGCAGGCGGCCCCGATGCCTGCCCGCAATGGGCTGGCTTCCCAAATCCAGCAACTGACCACAGCCGTCAGTGCCCTAGTCATTGGACAGGCAACTAGACCTCAAACCCCACGCCCACGCCCGCCGCCGCGCCAGAAGAAGCAGGCGCCAAAGCAACCACCGAAGCCGAAGAAACCAAAAACACAGGAGAAGAAGAAGAAGCAACCTGCAAAACCCAAACCCGGAAAGAGACAACGTATGGCACTCAAGTTGGAGGCCGACAGACTGTTCGACGTCAAAAATGAGGACGGAGATGTCATCGGGCACGCACTGGCCATGGAAGGAAAGGTAATGAAA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGTCCGGCAGAAGTAAAAGAAGCGTCACTGACGACTTTACCTTGACCAGCCCGTACTTGGGCACATGCTCGTACTGTCACCATACTGAACCGTGCTTTAGCCCGATTAAGATCGAGCAGGTCTGGGATGAAGCGGACGACAACACCATACGCATACAGACTTCCGCCCAGTTTGGATACGACCAAAGCGGAGCAGCAAGCTCAAATAAGTACCGCTACATGTCGCTCGAGCAGGATCATACTGTCAAAGAAGGCACCATGGATGACATCAAGATCAGCACCTCAGGACCGTGTAGAAGGCTTAGCTACAAAGGATACTTTCTCCTCGCGAAGTGTCCTCCAGGGGACAGCGTAACGGTTAGTATAGCGAGTAGCAACTCAGCGACGTCATGCACAATGGCCCGCAAGATAAAACCAAAATTCGTGGGACGGGAAAAATATGACCTACCTCCCGTTCACGGTAAGAAGATTCCTTGCACAGTGTACGACCGTCTGAAAGAAACAACCGCCGGCTACATCACTATGCACAGGCCGGGACCGCACGCCTATACGTCCTATCTGGAGGAATCATCAGGGAAAGTCTACGCGAAGCCACCATCCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AAAGTCTACGCGAAGCCACCATCCGGAAAGAACATTACGTACGAGTGCAAGTGCGGCGATTACAAGACCGGTACCGTTACGACCCGTACCGAAATCACGGGCTGCACCGCCATCAAGCAGTGCGTCGCCTATAAGAGCGACCAAACGAAGTGGGTCTTCAATTCGCCGGACTTGATCAGACATGCCGACCACACGGCCCAAGGGAAATTGCATTTACCTTTCAAGCTGATCCCGAGTACCTGCATGGTCCCTGTTGCCCACGCGCCGAACGTAGTACACGGCTTTAAACACATCAGCCTCCAATTAGACACAGACCACCTGACATTGCTCACCACCAGGAGACTAGGGGCAAATCCGGAACCAACTACTGAATGGATCATCGGAAAGACGGTTAGAAACTTCACCGTCGACCGAGATGGCCTGGAATACATATGGGGCAATCACGAACCGGTAAGGGTCTATGCCCAAGAGTCTGCACCAGGAGACCCTCACGGATGGCCACACGAAATAGTACAGCATTACTACCATCGCCATCCTGTGTACACCATCTTAGCCGTCGCATCAGCTGCTGTGGCGATGATGATTGGCGTAACTGTTGCA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GATGATGATTGGCGTAACTGTTGCAGCATTATGTGCCTGTAAAGCGCGCCGTGAGTGCCTGACGCCATATGCCCTGGCCCCAAATGCCGTGATTCCAACTTCGCTGGCACTTTTGTGCTGTGTTAGGTCGGCTAATGCTGAAACATTCACCGAGACCATGAGTTACCTATGGTCGAACAGCCAGCCATTCTTCTGGGTCCAGCTGTGTATACCCCTGGCCGCTGTCATCGTTCTAATGCGCTGTTGCTCATGCTGCCTGCCTTTTTTAGTGGTTGCCGGCGCCTACCTGGCGAAGGTAGACGCCTACGAACATGCGACCACTGTTCCAAATGTGCCACAGATACCGTATAAGGCACTTGTTGAAAGGGCAGGGTACGCCCCGCTCAATTTGGAGATTACTGTCATGTCCTCGGAGGTTTTGCCTTCCACCAACCAAGAGTACATCACCTGCAAATTCACCACTGTGGTCCCCTCCCCTAAAGTCAAATGCTGCGGCTCCTTGGAATGTCAGCCCGCCGCTCACGCAGACTATACCTGCAAGGTCTTTGGAGGGGTGTACCCCTTCATGTGGGGAGGAGCACAATGTTTTTGCGACAGTGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GAGCACAATGTTTTTGCGACAGTGAGAACAGCCAGATGAGTGAGGCGTACGTCGAATTGTCAGCAGATTGCGCGACTGACCACGCGCAGGCGATTAAGGTGCATACTGCCGCGATGAAAGTAGGACTACGTATAGTGTACGGGAACACTACCAGTTTCCTAGATGTGTACGTGAACGGAGTCACACCAGGAACGTCTAAAGACCTGAAAGTCATAGCTGGACCAATTTCAGCATCGTTTACACCATTCGATCACAAGGTCGTTATCCATCGCGGCCTGGTGTACAACTATGACTTCCCGGAATACGGAGCGATGAAACCAGGAGCGTTTGGAGACATTCAAGCTACCTCCTTGACTAGCAAAGATCTCATCGCCAGCACAGACATTAGACTACTCAAGCCTTCCGCCAAGAACGTGCATGTCCCGTACACGCAGGCCGCATCTGGATTCGAGATGTGGAAAAACAACTCAGGCCGCCCACTGCAGGAAACCGCCCCTTTCGGGTGCAAGATTGCAGTCAATCCGCTTCGAGCGGTGGACTGCTCATACGGGAACATTCCCATCTCTATCGACATCCCGAACGCTGCCTTTATCAGGACAT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCGAACGCTGCCTTTATCAGGACATCAGATGCACCACTGGTCTCAACAGTCAAATGTGATGTCAGTGAGTGCACTTACTCAGCGGACTTCGGCGGGATGGCTACCCTGCAGTATGTATCCGACCGCGAAGGACAATGCCCTGTACATTCGCATTCGAGCACAGCAACCCTCCAAGAGTCGACAGTTCATGTCCTGGAGAAAGGAGCGGTGACAGTACACTTCAGCACCGCGAGCCCACAGGCGAACTTTATTGTATCGCTGTGTGGTAAGAAGACAACATGCAATGCAGAATGCAAACCACCAGCTGACCATATCGTGAGCACCCCGCACAAAAATGACCAAGAATTCCAAGCCGCCATCTCAAAAACTTCATGGAGTTGGCTGTTTGCCCTTTTCGGCGGCGCCTCGTCGCTATTAATTATAGGACTTATGATTTTTGCTTGCAGCATGATGCTGACTAGCACACGAAGATGACCGCTACGCCCCAATGACCCGACCAGCAAAACTCGATGTACTTCCGAGGAACTGATGTGCATAATGCATCAGGCTGGTATATTAGATCCCCGCTTACCGCGGGCAATATAGCAACACCAAAACTCG | [
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11518,
11519,
11520,
11521,
11522,
11523,
11524
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCAATATAGCAACACCAAAACTCGACGTATTTCCGAGGAAGCGCAGTGCATAATGCTGCGCAGTGTTGCCAAATAATCACTATATTAACCATTTATTCAGCGGACGCCAAAACTCAATGTATTTCTGAGGAAGCATGGTGCATAATGCCATGCAGCGTCTGCATAACTTTTTATTATTTCTTTTATTAATCAACAAAATTTTGTTTTTAACATTTC | [
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11710,
11711,
11712,
11713,
11714,
11715,
11716
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGACAATTCACCCCGCATCATCTGAATTGTGTGATTTCGTCCGTGTACGAGGGTACAAGAGACGGAGTTGGAGCCGCACCGTCATACCGCACTAAAAGGGAGAACATTGCTGATTGTCAAGAGGAAGCAGTTGTCAATGCAGCCAATCCGCTGGGCAGACCAGGCGAAGGAGTCTGCCGTGCCATCTATAAACGTTGGCCGAACAGTTTCACCGATTCAGCCACAGAGACCGGCACCGCAAAACTGACTGTGTGCCAAGGAAAGAAAGTGATCCACGCGGTTGGCCCTGATTTCCGGAAACACCCAGAGGCAGAAGCCCTGAAATTGCTGCAAAACGCCTACCATGCAGTGGCAGACTTAGTAAATGAACATAATATCAAGTCTGTCGCCATCCCACTGCTATCTACAGGCATTTACGCAGCCGGAAAAGACCGCCTTGAAGTATCACTTAACTGCTTGACAACCGCGCTAGATAGAACTGATGCGGACGTAACCATCTACTGCCTGGATAAGAAGTGGAAGGAAAGAATCGACGCGGTGCTCCAACTTAAGGAGTCTGTAACAGAGCTGAAGGATGAGGATATGGAGATCGACGACGAG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTTTGACACCACCCCTTTTATGTTTAAGAACTTGGCTGGAGCATATCCATCATACTCTACCAACTGGGCCGACGAAACCGTGTTAACGGCTCGTAACATAGGCCTGTGCAGCTCCGACGTCATGGAGCGGTCACGTAGAGGGATGTCCATTCTTAGGAAGAAGTATTTGAAACCATCCAATAATGTCCTATTCTCTGTTGGCTCGACCATCTACCACGAGAAGAGGGACTTACTGAGGAGCTGGCACCTGCCGTCTGTATTTCACTTACGTGGCAAGCAAAATTACACATGTCGGTGTGAGACTATAGTTAGTTGCGACGGGTACGTCGTTAAAAGAATAGCTATCAGTCCAGGCCTGTATGGGAAGCCTTCAGGCTATGCTGCCACGATGCACCGCGAGGGATTCTTGTGCTGCAAAGTGACAGACACATTGAACGGGGAGAGGGTCTCTTTTCCCGTGTGCACGTATGTGCCAGCTACATTGTGTGACCAAATGACTGGCATACTGGCAACAGATGTCAGTGCGGACGACGCGCAAAAACTGCTGGTTGGGCTCAACCAGCGCATAGTCGTCAACGGTCGCACCCAAAGAAACACCAA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AATAAGGGACGTCAAGAAAATGAAAGGGCTGGACGTCAATGCCAGAACTGTGGACTCAGTGCTCTTGAATGGATGCAAACACCCCGTAGAGACCCTGTATATTGACGAAGCTTTTGCTTGTCATGCAGGCACTCTCAGAGCGCTCATAGCCATCATAAGACCTAAAAAGGCAGTGCTCTGCGGGGATCCAAAACAGTGCGGCTTTTTTAACATGATGTGCCTGAAAGTGCATTTTAACCACGAGATTTGCACGCAGGTCTTCCACAAAAGCATCTCTCGTCGTTGCACTAAATCTGTGACTTCGGTCGTCTCAACCTTGTTTTACGACAAAAGAATGAGAACGACGAACCCGAAAGAGACTAAGATTGAGATTGACACTACTGGCAGTACTAAACCAAAGCAGGACGATCTCATTCTCACTTGTTTCAGAGGGTGGGTAAAGCAGTTGCAAATAGATTACAAAGGCAACGAAATAATGACGGCAGCCGCCTCTCAAGGGCTGACCCGTAAAGGCGTGTATGCCGTTCGGTACAAGGTGAATGAAAATCCCCTGTACGCACCCACCTCAGAACATGTGAACGTCCTACTGACCCGTACGGA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTGCTTTCTCCACAGGCTGTACTCAAGAGTGAGAAACTATCTTGCATTCACCCTCTCGCTGAACAAGTCATAGTGATAACACACTCTGGCCGAAAAGGGCGTTATGCCGTGGAACCCTATCATGGAAAAGTAGTGGTGCCAGAGGGACATGCAATACCCGTCCAGGACTTTCAAGCTCTGAGTGAAAGTGCCACCATTGTGTACAACGAACGAGAGTTCGTAAACAGGTATTTGCACCATATTGCCACACATGGAGGAGCGCTGAACACAGATGAAGAATATTACAAAATTGTCAAGCCCAGCGAGCACGACGGCGAATACCTGTATGATATCGACAGGAAACAGTGCGTCAAGAAAGAACTAGTCACTGGGCTAGGGCTTACAGGCGAGCTGGTGGATCCTCCCTTCCATGAATTCGCCTACGAGAGCCTGAGAACACGACCGGCCGCTCCTTACCAAGTACCAACCATAGGGGTGTATGGCGTGCCGGGTTCAGGCAAGTCTGGCATCATTAAAAGCGCAGTCACCAAAAAAGATCTGGTGGTGAGCGCCAAGAAAGAGAACTGCGCAGAAATAATAAGGGACGTCAAGAAAATGAAA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCCATGGAAGGAAAGGTAATGAAACCACTCCACGTGAAAGGAACTATTGACCACCCTGTGCTATCAAAGCTCAAATTCACCAAGTCGTCAGCATACGACATGGAGTTCGCACAGTTGCCGGTCAACATGAGAAGTGAGGCGTTCACCTACACCAGCGAACACCCTGAAGGGTTTTACAACTGGCACCACGGAGCGGTGCAGTATAGTGGAGGTAGATTTACCATCCCCCGCGGAGTAGGAGGCAGAGGAGACAGTGGTCGTCCGATTATGGATAACTCAGGCCGGGTTGTCGCGATAGTCCTCGGAGGGGCTGATGAGGGAACAAGAACTGCCCTTTCGGTCGTCACCTGGAATAGCAAAGGGAAGACAATCAAGACAACCCCGGAAGGGACAGAAGAGTGGTCTGCAGCACCACTGGTCACGGCCATGTGCTTGCTTGGAAACGTGAGCTTCCCATGCAATCGCCCGCCCACATGCTACACCCGCGAACCATCCAGAGCTCTTGACATCCTTGAAGAGAACGTGAACCACGAGGCCTACGACACCCTGCTCAACGCCATATTGCGGTGCGGATCGTCCGGCAGAAGTAAAAGAAGCGT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATGGGCGGCGCATGAGAGAAGCCCACACCAATTACCTACCCAAAAATGGAGAAAGTTCACGTTGACATCGAGGAAGACAGCCCATTCCTCAGAGCTTTGCAACGGAGCTTCCCGCAGTTTGAGGTAGAAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTTCAAAACTGATCGAAACGGAGGTGGACCCATCCGACACGATCCTTGACATTGGAAGTGCGCCCGCCCGCAGAATGTATTCTAAGCATAAGTATCATTGCATCTGTCCGATGAGATGTGCGGAAGATCCGGACAGATTGTACAAGTATGCAACTAAGCTGAAGAAAAATTGCAAGGGAATAACTGACAAGGAATTGGACAAGAAAATGAAGGAGCTTGCCGCCGTCATGAGCGACCCTGACCTGGAAACTGAGACTATGTGCCTCCACGACGACGAGTCGTGTCGCTACGAAGGGCAAGTCGCTGTTTACCAGGATGTATACGCAGTTGACGGACCGACAAGTCTCTATCACCAAGCCAACAAGGGAGTTAGAGTCGCCTACTGGATAGGCTTTGACACCACCCCTTTTATGTTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACGGTCGCACCCAAAGAAACACCAATACCATGAAGAATTATCTTTTGCCCGTAGTGGCCCAGGCATTTGCTAGGTGGGCAAAAGAATATAAGGAAGATCAAGAAGATGAGAGGCCACTAGGACTACGAGATAGACAATTAGTTATGGGGTGCTGCTGGGCTTTTAGAAGGCACAAGATAACATCTATTTATAAGCGCCCAGATACCCAAACCATCATCAAAGTGAACAGCGATTTCCACTCATTTGTGCTGCCCAGGATAGGCAGTAACACATTGGAGATCGGGCTGAGAACAAGAATCAGGAAAATGCTAGAAGAGCGCAAGGAGCCGTCACCTCTCATTACTGCCGAGGACGTACAAGAAGCTAAGTGCGCAGCCGATGAGGCTAAGGAGGTGCGTGAAGCCGAGGAGTTGCGCGCTGCACTACCACCTTTGGCAGCAGATGTTGAGGAGCCCACTCTGGAAGCCGATGTTGACTTGATGCTACAAGAGGCTGGGGCCGGCTCAGTGGAGACACCTCGTGGCTTGATAAAGGTTACCAGCTATGCCGGCGAGGACAAGATCGGCTCTTACGCAGTGCTTTCTCCACAGGCTGTACTCA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGCGGAAAGAAAGAAAACTGCCGCGAAATTGAGGCCGATGTGCTACGGCTGAGGGGCATGCAGATCACGTCGAAGACAGTGGATTCGGTTATGCTCAACGGATGCCACAAAGCCGTAGAAGTGCTGTATGTTGACGAAGCGTTCGCGTGCCACGCAGGAGCACTACTTGCCTTGATTGCAATCGTCAGACCCCGTAAGAAGGTAGTGCTATGCGGAGACCCTAAGCAATGCGGATTCTTCAACATGATGCAACTAAAGGTATATTTCAACCACCCGGAAAAAGACATATGTACCAAGACATTCTACAAGTTTATCTCCCGACGTTGCACACAGCCAGTCACGGCTATTGTATCGACACTGCATTACGATGGAAAAATGAAAACCACAAACCCGTGCAAGAAGAACATCGAAATCGACATTACAGGGGCCACGAAGCCGAAGCCAGGGGACATCATCCTGACATGCTTCCGCGGGTGGGTTAAGCAACTGCAAATCGACTATCCCGGACATGAGGTAATGACAGCCGCGGCCTCACAAGGGCTAACCAGAAAAGGAGTATATGCCGTCCGGCAAAAAGTCAATGAAAACCCGCTGTACGCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACGGTCAAGTATTCGGCCAGCAAGTCAGGCAAGTGCGCAGTCCATGTGCCATCAGGGACTGCTACCCTAAAAGAAGCAGCAGTCGAGCTAACCGAGCAAGGGTCGGTGACCATTCATTTCTCGACCGCAAATATCCACCCGGAGTTCAGGCTCCAAATATGCACATCATATGTCACGTGCAAAGGTGATTGTCACCCCCCGAAAGACCACATTGTGACACACCCCCAGTATCACGCCCAAACATTTACAGCCGCGGTGTCAAAAACCGCGTGGACGTGGTTAACATCCCTGCTGGGAGGATCGGCCGTAATTATTATAATTGGCTTAGTGCTGGCTACTATTGTGGCCATGTACGTGCTGACCAACCAGAAACATAATTGAACATAGCAGCAATTGGCAAGCTGCCTATATTGAACTCGCGGCGATTGGCATGCCGCTTTAAAATTTTATTTTATTTTCTTTTCTTTTCCGAATCGGATTTTGTTTTTAATATTT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACACAGCCTCAGTGCAGGCGTTCCTCAACATCACCGTGGGAGAACACTCCATTGTGACCACTGTGTATGTGAATGGAGAAACTCCTGTGAACTTCAATGGGGTCAAATTAACTGCAGGTCCACTTTCCACAGCTTGGACACCTTTTGACCGCAAAATCGTGCAGTATGCCGGGGAGATCTATAATTACGACTTTCCTGAGTATGGGGCAGGACAACCAGGAGCATTTGGAGACATACAATCCAGAACAGTCTCAAGCTCAGATCTGTACGCCAATACCAATCTAGTGCTGCAGAGACCCAAAGCAGGAGCGATCCATGTGCCATACACTCAGGCGCCATCGGGTTTTGAGCAATGGAAGAAAGATAAAGCTCCGTCATTGAAATTCACCGCCCCTTTCGGATGCGAAATATATACAAACCCCATTCGCGCCGAAAATTGTGCTGTAGGGTCAATTCCATTAGCCTTTGACATCCCCGACGCCTTGTTCACCAGGGTGTCAGAAACACCGACACTTTCAGCGGCCGAATGCACTCTTAATGAGTGCGTGTATTCATCCGACTTTGGCGGGATCGCCACGGTCAAGTATTCGGCCAGCAAGT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCTGTGCTTTGCTGCGCCCGTACTGCCCGGGCCGAGACCACCTGGGAGTCCTTGGATCACCTATGGAACAATAACCAACAGATGTTCTGGATCCAATTGCTGATCCCTCTGGCCGCCTTGATTGTAGTGACTCGCCTGCTCAAGTGCGTGTGCTGTGTAGTGCCTTTTTTAGTCGTGGCCGGCGCCGCAGGCGCCGGCGCCTACGAGCACGCGACCACGATGCCGAGCCAAGCGGGAATCTCGTATAACACCATAGTCAACAGAGCAGGCTACGCGCCACTCCCTATCAGCATAACACCGACAAAGATCAAGCTGATACCCACAGTGAACTTGGAGTACGTCACCTGCCACTACAAAACAGGAATGGATTCACCAGCCATCAAATGCTGCGGATCTCAGGAATGTACTCCAACTTACAGGCCTGATGAACAGTGCAAAGTCTTCACAGGGGTTTACCCGTTCATGTGGGGAGGCGCATATTGCTTTTGCGACACTGAGAACACCCAAGTCAGCAAGGCCTACGTAATGAAATCTGACGACTGCCTTGCTGATCACGCTGAAGCATACAAAGCGCACACAGCCTCAGTGCAGGCGTTCCT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACAAAGAAGGAGCAGTGCAGAGCATATCGATTGCAGAACGACAAATGGGTGTATAATTCTGACAAACTGCCCAAAGCTGCGGGAGCCACCCTAAAAGGAAAATTACACGTCCCATTCTTGCTGGCAGACGGCAAATGTACTGTGCCTCTGGCACCAGAACCTATGATAACCTTCGGTTTCCGATCAGTGTCACTGAAACTGCACCCTAAGAATCCCACATATTTGACCACTCGCCAACTTGCTGATGAGCCTCATTACACGCACGAGCTCATATCTGAACCAGCTGTTAGGAATTTTACCGTCACTGAAAAGGGGTGGGAGTTTGTATGGGGAAACCACCCGCCGAAAAGGTTTTGGGCACAGGAAACAGCGCCCGGAAATCCACATGGGCTGCCACACGAGGTGATAACTCATTATTACCACAGATACCCTATGTCCACCATCTTGGGTTTGTCAATTTGCGCCGCCATCGTAACCGTTTCTGTTGCAGCGTCCACTTGGCTGTTTTGCAAATCCAGAGTTTCGTGCCTAACTCCTTACCGGCTAACACCCAACGCCAGGATGCCGCTTTGCCTGGCTGTGCTTTGCTGCGCCCGTACT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTCCAATAGCAATCGAGGCAGTGAAGAGTGACGGGCACGACGGCTATGTTAGACTTCAGACTTCCTCGCAGTACGGCCTGGACTCCTCTGGCAACTTAAAAGGAAGGACCATGCGGTATGACATGCACGGGACCATTGAAGAGATACCGCTACATCAAGTGTCACTCCACACATCTCGCCCGTGTCACATTGTGGATGGGCATGGTTATTTTCTACTTGCTAGGTGCCCGGCAGGGGACTCCATCACCATGGAATTTAAGAAAAATTCAGTCACACACTCCTGCTCAGTGCCGTATGAAGTGAAATTTAATCCTGTAGGCAGAGAACTCTACACTCATCCCCCAGAACACGGAGCAGAGCAAGCGTGCCAAGTCTACGCGCATGATGCACAGAACAGAGGAGCTTATGTCGAGATGCACCTCCCGGGCTCAGAAGTGGATAGCAGTTTGGTTTCCTTGAGCGGCAGTTCAGTCACTGTGACACCTCCTGCTGGGACTAGCGCCCTGGTGGAATGCGAGTGCGGCGGCACAAAGATCTCCGAGACCATCAACACGGCAAAACAGTTCAGCCAGTGCACAAAGAAGGAGCAGTGCAGAGCAT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CAAATATGATCTTGAGTATGCAGATGTGCCACAGAACATGCGGGCCGATACATTCAAGTACACCCATGAGAAGCCCCAAGGCTATTACAGCTGGCATCATGGAGCAGTCCAATATGAAAATGGGCGTTTCACGGTGCCAAAAGGAGTTGGGGCCAAGGGAGACAGCGGACGACCCATTCTGGATAATCAGGGACGGGTGGTCGCTATTGTGCTGGGAGGTGTGAATGAAGGATCTAGGACAGCCCTTTCAGTCGTCATGTGGAACGAGAAGGGAGTAACTGTGAAGTATACTCCGGAGAACTGCGAGCAATGGTCACTAGTGACCACCATGTGCCTGCTCGCCAATGTGACGTTCCCATGTGCCCAACCACCAATTTGCTACGACAGAAAACCAGCAGAGACCTTGGCCATGCTCAGCGTTAACGTTGACAACCCGGGCTACGATGAGCTGCTGGAAGCAGCTGTTAAGTGCCCCGGAAGGAAAAGGAGATCTACCGAGGAGCTGTTTAAGGAGTACAAGCTAACGCGCCCTTACATGGCCAGATGTATCAGATGTGCCGTTGGGAGCTGCCATAGTCCAATAGCAATCGAGGCAGTGAA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGGGGCCCCTATAACTCTCTACGGCTAACCTGAATGGACTACGACATAGTCTAGTCCGCCAAGATGTTCCCGTTCCAACCAATGTATCCGATGCAGCCAATGCCCTATCGCAATCCATTCGCGGCCCCGCGCAGGCCCTGGTTCCCCAGAACTGACCCTTTTCTGGCGATGCAGGTGCAGGAATTAACCCGCTCGATGGCTAACCTGACGTTCAAGCAACGCCGGGACGCGCCACCTGAGGGGCCACCCGCTAAGAAACCGAAGAGGGAGGCCCCGCAAAAACAGAAAGGGGGAGGCCAAGGGAAGAAGAAGAAGAACCCGGGGAAGAAGAAGGCTAAGACGGGGCCGCCTAATCCGAAGGTACAGAGTGGAAACAAGAAGAAGACCAACAAGAAACCAGGCAAGAGACAGCGCATGGTCATGAAATTGGAATCTGACAAGACATTCCCAATTATGCTGGAAGGGAAGATTAATGGCTATGCTTGCGTGGTCGGAGGGAAGTTATTCAGGCCGATGCACGTGGAAGGCAAGATCGACAATGACGTTTTGGCCGCACTTAAGACGAAGAAAGCATCCAAATATGATCTTGAGTATGCAGAT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCGAAATATCATCAATACATTTGCCCACCAAAACTAAATTTAAATTCGGAGCCATGATGAAATCCGGAATGTTCCTCACACTGTTTGTGAACACAGTCATCAACATTGTAATCGCAAGCAGAGTGTTAAGAGAGCGGCTAACCGGATCACCATGTGCAGCATTCATTGGAGATGACAACATCGTGAAAGGAGTCAAATCTGACAAATTAATGGCCGACAGGTGCGCCACTTGGTTGAACATGGAGGTCAAGATCATAGACGCCGTGGTGGGCGAGAAAGCGCCCTATTTCTGTGGAGGGTTTATTTTGTGTGACACCGTGACCGGCACAGCGTGCCGTGTGGCCGACCCCTTAAAAAGGCTGTTTAAGCTTGGCAAACCTTTGGCAGCAGATGATGAACATGACGATGACAGGAGAAGGGCACTACACGAAGAGTCAACACGCTGGAATCGAGTGGGAATTCTTCCAGAGCTGTGTAAGGCAGTAGAATCAAGGTATGAAACCGTAGGAACTTCCATCATAGTTATGGCCATGACTACTCTAGCTAGCAGTGTCAAATCATTCAGCTACCTGAGAGGGGCCCCTATAACTCTCTACGGC | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TATTGGATTCGGCTGCCTTTAATGTGGAATGCTTCAAGAAATATGCGTGCAACAATGAATATTGGGAAACGTTCAAAGAAAACCCCATCAGGCTTACTGAAGAAAATGTGATAAATTACATTACTAAATTAAAAGGACCAAAAGCTGCTGCTCTTTTTGCGAAGACACATAATTTGAATATGTTACAGGACATACCAATGGACAGGTTTGTAATGGACTTAAAGAGGGACGTGAAAGTGACTCCAGGAACAAAACATACTGAAGAACGGCCAAAGGTACAGGTGATACAGGCTGCCGATCCGCTAGCGACAGCGTACTTGTGCGGAATCCACCGGGAGCTGGTTAGGAGATTGAATGCTGTCCTGCTTCCGAACATCCACACACTGTTTGACATGTCGGCTGAAGACTTTGACGCTATTATTGCCGAGCATTTCCAGCCTGGGGACTGTGTTCTGGAAACTGACATTGCGTCGTTTGATAAAAGTGAGGACGACGCCATGGCTCTGACCGCGCTAATGATTCTGGAAGATCTAGGAGTGGACGCAGAGCTGTTGACGCTGATTGAGGCGGCTTTCGGCGAAATATCATCAATACATTTGC | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGTGGTGTTGGAGAGGACCGAATTGGAGATTTCGTATGCCCCGCGCCTCGACCAAGAAAAAGAAGAACTACTACGCAAGAAATTACAGCTGAATCCCACACCTGCTAACAGAAGCAGATACCAGTCCAGGAGGGTGGAGAACATGAAAGCCATAACAGCTAGACGTATTCTGCAAGGCCTAGGGCACTATTTGAAGGCAGAAGGAAAAGTGGAGTGCTATCGAACCCTGCATCCTGTTCCTTTGTATTCATCTAGTGTGAATCGTGCTTTTTCAAGCCCCAAGGTCGCAGTGGAAGCCTGCAATGCTATGCTGAAAGAAAACTTTCCGACTGTAGCTTCTTACTGTATTATTCCAGAGTACGATGCCTATCTGGACATGGTTGACGGCGCTTCTTGTTGCTTAGACACTGCCAGTTTTTGCCCTGCGAAGCTGCGCAGCTTTCCAAAGAAACACGCTTATTTGGAACCCACAATACGGTCGGCAGTGCCATCAGCGATTCAGAACACGCTCCAGAACGTCCTGGCAGCTGCCACAAAAAGAAATTGCAACGTCACGCAAATGAGAGAATTGCCCGTATTGGATTCGGCTGCCTTTAATGT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACCCACCAGGTGCTGCAAGTCGAGGCAGACATTCACGGGCCGCCTTCTGTATCCAGCTCATCCTGGTCCATTCCTCATGCATCCGACTTTGATGTGGACAGTTTATCCATCCTTGACACCCTGGAGGGAACTAGCGTGACCAGCGAGGCAGCGTCAGCCGAGACTAACTCCTACTTCGCAAGTAGCATGGAGTTTCTGGCGCGACCGGTACCTGCGCCTCGAACAGTATTCAGGAATCTTCCTCACCCCGCTCCACGCACAAGAACACCGTCACTTGCACCTTGCAGGGCCAGTTCGGGAACTAGCCTAGTTTCCACCCCGCCAGGCGTAAATAGGGTGATTACTAGAGAGGAGCTCGAGGCGCTTACCCCGTCCCGCGCTCCTAGCAGGTCGGCCTCAAGAACTAGCCTGGTATCTAACCCGCCGGGCGTAAATAGGGTGATTACAAGAGAGGAGTTTGAGGCGTTCGTAGCACAACAGCAATGACGGTTTGACGCGGGTGCATACATCTTTTCCTCCGATACCGGTCAAGGGCATTTACAACAAAAATCAGTAAGGCAAACGGTGTTATCCGAAGTGGTGTTGGAGAGGACCGAATTG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTGGAAGGAAGGGCTACAGCACAAGCGATGGCAAGACTTTCTCATATTTGGAAGGGACCAAATTTCACCAGGCGGCCAAGGATATAGCAGAAATTAATGCCATGTGGCCCGTTGCAACGGAGGCCAATGAGCAAGTATGCATGTATATCCTTGGTGAAAGCATGAGCAGCATTAGGTCAAAATGCCCCGTCGAAGAGTCGGAAGCCTCCACACCACCTAGCACGCTGCCTTGCTTGTGCATCCATGCTATGACTCCAGAAAGAGTACAACGCCTAAAAGCCTCACGTCCAGAACAAATTACTGTGTGCTCATCCTTTCCATTGCCGAAGTATAGAATTACTGGTGTGCAGAAGATCCAGTGCTCCCAGCCTATACTGTTCTCACCTAAGGTGCCTGCGTACATTCATCCACGGAAGTACCTCGTGGAAACACCACCGGTGGAAGAGAACCAATCCACAGAGGGGACACCTGAACCAGCACCCGTAAACGTGGATGCAACCAGGACTAGAACGCCTGAACCGATCATCATTGAAGAGGAAGAAGAGGATAGTATAAGTTTGCTGTCAGACGGCCCGACCCACCAGGTGCTGCAAGTCGAGG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGGATGCGCACCCTCTTATCATGTGGTGCGAGGGGATATTGCCACGGCCACCGAAGGAGTGATCATAAATGCTGCTAACAGCAAAGGACAACCTGGCGGAGGGGTGTGCGGAGCGCTGTATAAGAAATTCCCGGAAAGCTTCGATTTACAGCCGATCGAAGTGGGAAAAGCGCGACTGGTCAAAGGTGCAGCTAAGCATATCATTCATGCCGTAGGGCCCAACTTCAACAAAGTTTCGGAAGTTGAAGGTGACAAACAGTTGGCAGAGGCTTATGAGTCCATCGCTAAAATTGTCAACGACAACAATTACAAGTCAGTAGCGATTCCACTGTTGTCCACCGGCATCTTTTCCGGGAACAAAGATCGACTAACCCAATCATTGAACCATTTGCTGACAGCTTTAGACACCACTGATGCAGATGTAGCCATATACTGCAGGGACAAGAAATGGGAAATGACTCTCAAGGAAGCAGTGGCTAGGAGAGAAGCAGTGGAGGAGATATGTATATCCGACGACTCTTCGGTGACAGAACCGGATGCAGAGCTGGTGAGGGTACATCCGAAGAGTTCTTTGGCTGGAAGGAAGGGCTACAGCACAAG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTGAACAGAAGACTGCCTCATGCTTTAGTCCTCCACCATAATGAACACCCACAGAGTGACTTTTCTTCATTCGTCAGCAAACTGAAGGGCAGAACTGTCTTGGTGGTCGGGGAGAAGTTGTCCGTCCCAGGCAAAACTGTTGACTGGTTGTCAGACCAGCCTGAGGCTACCTTCAGAGCTCGGCTGGATTTAGGTATTCCAGGTGACGTGCCCAAATACGACATTGTATTTATTAATGTGAGGACTCCATATAAATACCATCATTATCAGCAGTGTGAAGACCACGCCATCAAGCTTAGCATGTTGACCAAGAAAGCTTGTCTGCATCTGAATCCCGGCGGAACCTGCGTCAGCATAGGTTATGGTTACGCTGACAGGGCCAGCGAAAGCATTATTGGTGCTATAGCGCGGCAGTTCAAGTTCTCCCGGGTATGCAAACCGAAATCCTCACTTGAAGAGACAGAAGTCCTGTTTGTATTTATTGGGTACGATCGCAAGGCCCGTACGCACAATCCTTACAAGCTTTCATCTACCTTGACCAACATCTATACAGGTTCCAGACTCCACGAAGCCGGATGCGCACCCTCTTATCATGTG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCACACAGCTTGATTTGCAGACGGGCAGAACTAGAGTTATCTCCGCACAGCATAACTTGGTCCCAGTGAACCGCAATCTCCCGCACGCCTTAGTCCCCGAGCACAAGGAGAAACAACCCGGCCCGGTCAAAAAATTCTTGAGCCAGTTCAAACACCACTCCGTACTTGTGGTCTCAGAGGAAAAAATTGAAGCTCCCCACAAGAGAATCGAATGGATCGCCCCGATTGGCATAGCCGGCGCTGATAAGAACTACAACCTGGCTTTCGGGTTTCCGCCGCAGGCACGGTACGACCTGGTGTTTATCAATATTGGAACTAAATACAGAAACCATCACTTTCAGCAGTGCGAAGACCATGCGGCGACCTTGAAAACCCTCTCGCGTTCGGCCCTGAACTGCCTTAACCCCGGAGGCACCCTCGTGGTGAAGTCCTACGGTTACGCCGACCGCAATAGTGAGGACGTAGTCACCGCTCTTGCCAGAAAATTTGTCAGAGTGTCTGCAGCGAGGCCAGAGTGCGTCTCAAGCAATACAGAAATGTACCTGATCTTCCGACAACTAGACAACAGCCGCACACGACAATTCACCCCGCATCATCTGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGTCAATGAAAACCCGCTGTACGCGATCACATCAGAGCATGTGAACGTGCTGCTCACCCGCACTGAGGACAGGCTAGTATGGAAAACTTTACAGGGCGACCCATGGATTAAGCAGCTCACTAACGTACCAAAAGGAAATTTTCAAGCCACCATCGAGGACTGGGAAGCTGAACACAAGGGAATAATTGCTGCGATAAACAGTCCCGCTCCCCGTACCAATCCGTTCAGCTGCAAGACTAACGTTTGCTGGGCGAAAGCACTGGAACCGATACTGGCCACGGCCGGTATCGTACTTACCGGTTGCCAGTGGAGCGAGCTGTTCCCACAGTTTGCAGATGACAAACCACACTCGGCCATCTACGCCCTGGACGTAATCTGCATTAAGTTTTTCGGCATGGACTTGACAAGCGGACTGTTTTCCAAACAGAGCATCCCGTTAACGTACCATCCTGCCGATTCAGCGAGGCCAGTAGCTCATTGGGACAACAGCCCAGGAACCCGCAAGTATGGGTACGATCACGCCGTTGCCGCCGAACTCTCCCGTAGATTTCCGGTGTTCCAGCTAGCTGGGAAAGGCACACAGCTTGATTTGCAGACGGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CAAATGACCGTATGATCGGACAGTACATCGTTGTCTCGCCAACCTCTGTGCTGAAGAACGCTAAACTCGCACCAGCACACCCGCTAGCAGACCAGGTTAAGATCATAACGCACTCCGGAAGATCAGGAAGGTATGCAGTCGAACCATACGACGCTAAAGTACTGATGCCAGCAGGAAGTGCCGTACCATGGCCAGAATTCTTAGCACTGAGTGAGAGCGCCACGCTAGTGTACAACGAAAGAGAGTTTGTGAACCGCAAGCTGTACCATATTGCCATGCACGGTCCCGCTAAGAATACAGAAGAGGAGCAGTACAAGGTTACAAAGGCAGAGCTCGCAGAAACAGAGTACGTGTTTGACGTGGACAAGAAGCGATGCGTCAAGAAGGAAGAAGCCTCAGGACTTGTCCTCTCGGGAGAACTGACCAACCCGCCCTATCACGAACTAGCTCTTGAGGGACTGAAGACTCGACCCGCGGTCCCGTACAAGGTTGAAACAATAGGAGTGATAGGCACACCAGGATCGGGCAAGTCGGCTATCATCAAGTCAACTGTCACGGCACGTGATCTTGTTACCAGCGGAAAGAAAGAAAACTGCCGCG | [
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2321,
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2323,
2324
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGCGAATCGTCATTAACGGTAAGACTAACAGGAACACCAATACCATGCAAAATTACCTTCTGCCAATCATTGCACAAGGGTTCAGCAAATGGGCCAAGGAGCGCAAAGAAGACCTTGACAATGAAAAAATGCTGGGTACCAGAGAGCGCAAGCTTACATATGGCTGCTTGTGGGCGTTTCGCACTAAGAAAGTGCACTCGTTCTATCGCCCACCTGGAACGCAGACCATCGTAAAAGTCCCAGCCTCTTTTAGCGCTTTCCCCATGTCATCCGTATGGACTACCTCTTTGCCCATGTCGCTGAGGCAGAAGATAAAATTGGCATTACAACCAAAGAAGGAGGAAAAACTGCTGCAAGTCCCGGAGGAATTAGTCATGGAGGCCAAGGCTGCTTTCGAGGATGCTCAGGAGGAATCCAGAGCGGAGAAGCTCCGAGAAGCACTCCCACCATTAGTGGCAGACAAAGGTATCGAGGCAGCCGCGGAAGTTGTCTGCGAAGTGGAGGGGCTCCAGGCGGACATCGGAGCAGCACTCGTCGAAACCCCGCGCGGTCATGTAAGGATAATACCTCAAGCAAATGACCGTATGATCGGACAGTA | [
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1745,
1746,
1747,
1748,
1749
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACCCTGTACTGGATTGGCTTCGATACCACCCAGTTCATGTTCTCGGCTATGGCAGGTTCGTACCCTGCGTACAACACCAACTGGGCCGACGAAAAAGTCCTCGAAGCGCGTAACATCGGACTCTGCAGCACAAAGCTGAGTGAAGGCAGGACAGGAAAGTTGTCGATAATGAGGAAGAAGGAGTTGAAGCCCGGGTCACGGGTTTATTTCTCCGTTGGATCGACACTTTACCCAGAACACAGAGCCAGCTTGCAGAGCTGGCATCTTCCATCGGTGTTCCACCTGAAAGGAAAGCAGTCGTACACTTGCCGCTGTGATACAGTGGTGAGCTGCGAAGGCTACGTAGTGAAGAAAATCACCATCAGTCCCGGGATCACGGGAGAAACCGTGGGATACGCGGTTACAAACAATAGCGAGGGCTTCTTGCTATGCAAAGTTACCGATACAGTAAAAGGAGAACGGGTATCGTTCCCCGTGTGCACGTATATCCCGGCCACCATATGCGATCAGATGACCGGCATAATGGCCACGGATATCTCACCTGACGATGCACAAAAACTTCTGGTTGGGCTCAACCAGCGAATCGTCATTAACGGTAAG | [
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1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATTGGCGGCGTAGTACACACTATTGAATCAAACAGCCGACCAATTGCACTACCATCACAATGGAGAAGCCAGTAGTTAACGTAGACGTAGACCCGCAGAGTCCGTTTGTCGTGCAACTGCAAAAGAGCTTCCCGCAATTTGAGGTAGTAGCACAGCAGGTCACTCCAAATGACCATGCTAATGCCAGAGCATTTTCGCATCTGGCCAGTAAACTAATCGAGCTGGAGGTTCCTACCACAGCGACGATTTTGGACATAGGCAGCGCACCGGCTCGTAGAATGTTTTCCGAGCACCAGTACCATTGCGTTTGCCCCATGCGTAGTCCAGAAGACCCGGACCGCATGATGAAATATGCCAGCAAACTGGCGGAAAAAGCATGCAAGATTACGAATAAGAACTTGCATGAGAAGATCAAGGACCTCCGGACCGTACTTGATACACCGGATGCTGAAACGCCATCACTCTGCTTCCACAACGATGTTACCTGCAACACGCGTGCCGAGTACTCCGTCATGCAGGACGTGTACATCAACGCACCCGGAACTATTTACCATCAGGCTATGAAAGGCGTGCGGACCCTGTACTGGATTGGCTTCGATA | [
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] | viral_gRNA | Kutchko,2018 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TTTTGGGTTTCAGGATCAGAAAATAGATTCTCTGAAACAGGAGGTCAGGAACGAGGAACAGACAGAGAACAGACTGTACCCTCCTTTGGATTCCCTCAAATCTCTCTTTGGCAACGACCCGTTGTCGCAGCAAGAATAGGAGGAGTTATAAAAGAGGTACTATTAGACACAGGGGCAGATGATACAGTACTAGAGGAAATAGAATTAGAGGGAAAATGGAGGCCAAAAATGATAGGGGGAATTGGAGGTTTTATAAAAGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAGAGCAATAGGTACAGTATTAGTAGGGCCCACACCTGTGAATATTATAGGGAGAAATATCTTAACTCAAATTGGGTGTACTCTAAATTTTCCCATTAGCACTATAGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGACGGTCCAAGAGTTAAACAGTGGCCCCTAACAGAAGAAAAAATAAAAGCATTGACAGAAATTTGTACAGAGATGGAAAAGGAAGGAAAAATTTCAAGAATAGGGCCAGAAAATCCATATAATACACCAATATTTGCTATTAAGAAAAAGGATAGCACAAAA | [
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1911,
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2222,
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2239,
2240,
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2245,
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2250,
2251,
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2253,
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2257,
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2260,
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2314,
2315,
2316,
2317,
2318,
2319,
2320,
2321,
2322,
2323,
2324
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGCTAATCTACTCCCAAAGAAGGCAAGAGATCCTTGATCTCTGGGTCTATCATACACAAGGCTTCTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACCCGGTGACCTTCGGCTGGTGCTTCAAGCTAGTGCCTGTAGATCCAACAGATGTGGAGGAAGCAAATGAAGGAGACAACAATGTGCTATTACATCCTATGTGCCAGCACGGACAAGAAGATGAACACAGAGAAGTGCTGATGTGGCAGTTTGACAGCCACTTGGCCCTGACACACAGAGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACAAAGGACTTTGTAAAGGGACTTTCCACAAGGGGTTGTCCGGGAGGCGTGCCTAGGGCGGGGGTAGGGAGTGGCTTGCCCTCAGAGCTGCATATAAGCAGCCGCTTCTCGCTTGTACTGGGTCTCTCTTGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAATAGGAGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTGAGTAACTTG | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GAGAGACTTACTCTGGATAGTGAGGAGGACGCTGGAGATTGTGGGACAGAAGTTCCTCGCAGGACTGAGACTGGTGTGGGAAACCCTAACATACTTGAAGAGCATTCTCCAGTATTGGGGACAAGAGCTGAAAACTAGTGCTATAAGCTTGCTTGACGCCACAGCAATAGCAGTAGCAGAGGGAACAGATAGAATTATAGAAATAGCACAAAGAGTTGGCAGAGGCATTTTGCATATACCTAGAAGAATTAGACAAGGTTTAGAAAGAGCTTTGCTATAAGATGGGAAACAAATGGTCAAAAAGTAGCCTGGTAGGATGGCCTGCAGTAAGGGACAGACTTAGAAGGACACCTCCAGCAGCAGAAGGAGTAGGGCCAGTCTCGCGAGACCTAGAGAGACATGGGGCTATAACAAGTAGGAATACTCCACAGACAAATGAGACTCTTGCCTGGTTAGAGGAGCAAAGGGACGAAGAAGTAGGATTTCCAGTAAGACCCCAAGTGCCTTTAAGGCCCATGACCTATAAAGCGGCCTTTGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATCTACTCCCAAAGAAGGC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GCTGTGGAAAGGTATCTAAAGGATCAACAACTCCTAGGACTATGGGGCTGCTCTGGAAAACTCATTTGCACTACTAATGTGCCTTGGAATAATACTTGGAGTAAAAAATTAGGAACAAACCTATCCTTTTGGGATAACATGACATGGATGCAATGGGAGAAAGAGATTGATAACTACACAGAAACTATCTATGAACTTCTAACACGATCTCAGAATCAACAGGAAGTCAATGAGCAAGAATTGTTAGCTCTGGATAAATGGTCAAGCCTGTGGAATTGGTTCGATATAACACAGTGGCTGTGGTATATAAAATTATTTGTCATGATAGTAGGAGGCTTAATAGGCATAAGAATAGTTTTTGCTATGCTTTCTATAGTCAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCCCTTTCCCAGTCCGGAGGGACCCAGACAGGCCAGAAGGAATCGAAGAAGGAGGTGGAGAAAACGACAACGTCAGATCAGTGCGCTTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGACTTGAGGAACCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTGGATAGTGAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CACATTATTTCAATTGTGGAGGAGAATTCTTTTACTGTAATACATCAAACTTATTCAATCAATCCACTATTAACAATATTACACACATTCCGTGCAGAATAAGACAAATTGTAAATCAGTGGCAAGGAGTAGGAAAAGGAATCTTTGCACCTCCTATTAGAGGAACAATTCAATGTAATTCCACAATCACAGGCCTACTCTTAACAAGAGATGGTAAAAATGAGACTGAAACTTTTAGACCTACAGGAGGAGACATGAGAAATAATTGGAGAAGTGAATTATACAAATACAAGGTAGTAAAAATTGAACCCCTAGGATTAGCACCAACCAAGGCAAAAAGGAGAACAGTGCAAAGAGAAAAGAGGGCAGTAGGACTGGGAGTGATGTTCCTTGGATTCATGGGAGCAGCAGGAAGCACTATGGGCGCAGCGGCACTGACGCTGACGGTACAGGCCAGAAATCTACTCTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAAAGCTATAGAGGCGCAACAGCATCTGTTGCAACTCTCAGTCTGGGGCATTAAACAGCTTCAGGCGCGAGTTCTTGCTGTGGAAAGGTATCTAAAGGATC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GACAGTTAAAAATGGAACTTATAGGTTAATTAACTGTAATACCACAGCCATAACCCAGGCTTGTCCAAAAACATCATTTGAACCAATTCCTATTTACTATTGTGCACCAGCTGGATTTGCCCTTTTAAAATGTAATGACCAGAATTTCAAGGGAAAAGGGACATGTAGAAATGTTAGCACAGTGCATTGTACACATGGTATTAAGCCTGTAGTCTCTACCCAATTCCTCTTGAATGGAAGCCTGGCAGAAGGAAACAAGACTGTAGTTAGGGTAAGAAGTAAATCTAATACAGAGACTATCATTGTGCAGCTAGCTACAGCAATATATATCAATTGTACCAGACTAGGTAATAAAACCATAGAGGGCATACCTATAGGGCCAGGACAAATTTTTTATAGGACTAAAACGGTGGTAGGCGACACCAGAGGAGCAGAGTGCAGAATTAATGGGACAGCCTGGAATGAGACTCTGAGACAGGTAAAGGAGGCATTAAACAACACATATCGAAATCTCAATCTCAGTCTCACAGAAATAAACTTTGAAGGTGCATCCGGCGGAGATCTAGAAGTAACTACACATTATTTCAATTGTGGAGGAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ATCAATTGATTGACAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAAAGTGATGGGGACACAGAGGAGTTGGAAGCAATTCTTATCCCTGAGGATCGTCATGTGCTTGTGGCTATTAGGGGTTATTAGATCTGAAAATAATTTATGGGTAACAGTGTACTATGGAGTACCTGTATGGAAAGAGGCAAAAACAACTCTTTTTTGTGCATCAGACGCTAAAGCACAGATAGCTGAGGCACACAACATATGGGCTTCTCAAGCTTGTGTGCCTACAGATCCTAACCCTGAAGAAATAACGTTAGAAAATGTAACAGAAGAGTTTGATGCATGGAACAATAACATGGTAGACCAAATGCAAGAAGATCTCATTAGCCTATGGGATCAAAGCCTAAAGCCATGTGTAAAACTGACCCCCCTCTGTGTGACCTTAAACTGTTCCACAAATACAACTACAGAGGCATCTCAGGTGCAGTATAATTGTTCTTTCAATGTAACTACAGAATTAAGAGATAAGAAGAAGCAAGTGTACTCCTTATTTTATAGAGAGGACATAACAAGTCTTGATAGCAATAAGACAGTTAAAAATGGAACTTATAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TGGACACTAGAATTATTAGATGAACTCAAACAGGAAGCAGTAAGACATTTTCCTAGACAGTGGCTTCATGATTTAGGACAGCACATTTATAACACATATGGAGACACTTGGGCGGGGGTTGAGGCTATCATAAGGATCCTGCAACAATTGCTGTTTATTCATTACAGAATTGGCTGCCAACATAGCAGAATAGGCATTCTGCCACAAGGAAGAAGGAGAAATGGATCCAATAGATCCTAACTTAGAACCCTGGAATCATCCAGGAAGCCAGCCTAAAACCCCCTGTAACAATTGCTATTGTAAAATGTGTTGCTATCACTGTCAATTTTGCTTCACAAGAAAAGGCTTAGGAATTTACTATGGCAGGAAGAAGCGGAAGCGACGAGGAGCTACTGAGAGCAGTAAGGATCATCAAGATACTATACCAAAGCAGTAAGTAATAAGTGTAATATAATATATGGAAATATTCATAATCTTAGGACTAATAGGAATAGTTATAGAATTAGTAATAGCAATAGTAGTATGGTTAAAAGCTTATGAATGTTATAAGGCACTTAAAAGACAAGAAAGGAGAGATCAATTGATTGACAGAATAAGAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGACTATGGAAAACAGGTGGAAGGTAATGATTGTCTGGCAGATAGACAGGATGAGAGTTAAAGCATGGAACAGTTTGGTAAAACATCACATGTATGTGTCTAAAAAGGCACGAGGTTGGTTTTACAGACATCATTATGAAAGTGAGAATCCAAAAGTTAGTTCAGAAATTCACATTCCAGTAGGAGATGCCAAATTAGTAATAGTAACCTATTGGGGACTCATGCCAGGAGAAAGAGACTGGCATTTAGGACATGGGGTCTCTATAGAATGGAGACAGAAAAGATATAGCACACAAATAGATCCTGAATTGGCAGACCACCTAATTCATTTGCATTATTTTGATTGTTTTGCAGAGTCTGCCATAAGGAAAGCCATACTAGGACAAATAGTTAGCCCTAGATGTGAATTCCCAGCAGGACACACAAAGGTAGGCACTCTACAATATTTGGCAATCTCAGCACTGCTAAAAAGGAAGCCAAAGAAACCACCTCTACCTAGTGTTAGTAAATTAGCAGAAGACAGATGGAACAAGCCCCGGAAGACCAAGGGCCACAAAGAGAGCCATACAATGAATGGACACTAGAATTATTAGATGAAC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ACATGTAGCCAGTGGATACATAGAGGCAGAAGTCATACCTGCTGAAACAGGGCAAGAGACAGCTTATTTTGTGCTGAAATTAGCAGGAAGATGGCCAGTAAAGGTTATACACACTGATAATGGCAGCAACTTTACTAGTGCTGCTGTCAAGGCTGCATGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCTCAGAGTCAAGGAGTAGTAGAATCAATGAACAAAGAGTTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCAGAACATTTAAAGACAGCAGTGCAAATGGCAGTCTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATCATAGATATAATAGCAACAGATATACAAACTAGAGAACTACAAAAACAAATTTCAAAAGTTCAAAAATTTCGGGTTTATTACAGGGACAGCAGAGAACCTATCTGGAAAGGACCAGCCAAGCTTCTCTGGAAAGGTGAGGGAGCGGTAGTGCTTCAAGATAAGGAAGATATAAAAGTAGTCCCACGCAGAAAGGCTAAAATAATCAGGGACTATGGAAAACAGGTGGAAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GCAAATAGAGAAACCAAATTAGGAAAAGCAGGATATGTAACTGATAGAGGGAGACAAAAGATTATCTCCCTAACAGAAACAACTAATCAAAGAGCAGAACTGCAAGCTATATACCTAGCCCTACAGGATTCAGAAGTAGAGGTAAACATAGTTACTGACTCACAATATGCATTAGGGATCATTCAATCACAGCCTGACATTAGTGAATCAGACATAGTAAATCAGATAATAGAGCAGCTAGTGAAAAAGGAAAAGATTTATCTTTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAATAGACAAATTAGTTAGTGCAGGAATCAGGAAAGTCCTTTTCCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAACAATTGGAAAGCTATGGCAGATGAATTTAATTTGCCACCCATAGTAGCCAAAGAAATAGTAGCCAGCTGTGATAAATGCCAATTAAAAGGAGAAGCCATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGCAACTAGACTGCACACATTTAGAAGGAAAGATCATCTTAGTAGCTGTACATGTAGCCAGTGGATACATAGAG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GTCTCTCTTGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAATAGGAGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTGAGTAACTTGAGCAGTGTGTGCCCATCCAATTTGTGACTCTGGTATCTAGAGATCCCTCAGATATTAAGTGTCTGTGCGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAACGAAAGTGTAACCGGAGAAGTTCTCTCGACGCAGGACTCGACTTGCTGAGTGCGCACCAGCAAGGGGCGAGGGGCCGGCGACTGGTGAGTACGCCTAATTTTTGACTAGCGAAAGCTAGAAGGAGAGAGGATGGGTGCGAGAGCGTCAGTATTAACGGGAGGAAAGTTAGATGATTGGGAAAAAATTTATCTCCGGCCAGGGGGAAAGAAAAAATATATGATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCTTGTAACCCCGGCCTAATGGACACAACAGAAGGATGTGAACAATTAATTAACCAGTTGCAGCCAGCTCTCACAACAGGATCAGAAGGACTAAGATCTTTATTTAACACCCTAGCAGTCCTCTGGTGCGTACA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CCCTAGCAGTCCTCTGGTGCGTACATCAAAGAATTAGAGTAAAAGACACAAAAGAGGCTTTAGACAAACTAGAAGAAGTGCAGCAAAAAAGCAAAGTGAAAGTAAAACAGGAAGCCGCGGCGGCAGACCCCAGCGGCGGCGAGAGCAGAAACTTCCCGATAGTAACAAATGCTCAGGGACAAATGGTCCATCAGTCGCTCTCACCCAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCATTTAGCCCAGAAGTCATACCCATGTTTATGGCTCTATCAGAAGGAGCCACCCCTCAGGATTTAAACACCATGCTAAATACAATAGGGGGACATCAGGCAGCAATGCAAATCTTAAAAGAAGTGATCAATGAGGAAGCTGCAGAGTGGGACAGGACACACCCTATACATGCAGGGCCAATTCCTCCAGGCCAAATGAGGGAACCAAGAGGAAGTGACATAGCAGGGACAACTAGCACCATTCAGGAACAAGTGGGATGGATGACCAGTAACCCTCCTACCCCGGTAGGAGACATTTACAAGAGATGGATAGTTTTAGGGCTTAATAAAATAGTAAGAATGTATAGCCCTGTCA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TCAATGACATACAGAAATTAGTAGGAAAGTTAAATTGGGCAAGTCAAATATATCCAGGAATTAAGGTAAAACAATTGTGTAAGCTTATTAGAGGAACAAAAGCTTTAACAGAGGTAGTTACCCTCACACAGGAAGCAGAATTAGAGTTAGCAGAAAACAGGGAGATATTAAGAGACCCTGTACATGGGGCCTACTATGACCCCTCAAAAGAATTGATAGCAGAAATACAGAAACAAGGTCAAGGCCAATGGACTTATCAGATTTATCAGGAACAGCATAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGAGCTGCCCATTCAAATGATGTAAAACAGTTGACTGAAGTAGTACAGAAAGTAGCCCTGGAAAGTATAGTCATCTGGGGAAAAACACCCAAGTTTAGACTGCCCATACAGAAAGAAACATGGGAGGCTTGGTGGACAGATTACTGGCAAGCAACTTGGATCCCTGAATGGGAATATGTTAACACCCCTCCCCTGGTAAAGCTGTGGTACCAGTTAGAAACAGAACCCATAGTGGGGGCAGAAACCTTTTATGTAGATGGGGCAGCAAATAGAGAAACCAAATTAGGAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TATTAAGAAAAAGGATAGCACAAAATGGAGAAAATTAGTAGACTTCAGAGAATTAAATAAAAGAACCCAAGATTTTTGGGAAGTCCAGCTAGGAATACCACACCCTGCGGGACTGAAAAAGAAAAAATCAGTAACAGTGCTGGACGTAGGGGATGCTTATTTTTCATGCCCCCTAGATGAAGAGTTTAGAAAATACACTGCCTTCACCATACCTAGTGTAAATAATGAGACACCAGGAATAAGGTACCAGTACAATGTACTCCCGCAGGGATGGAAAGGATCACCAGCTATTTTTCAAAGCAGTATGACTAAGATTCTGGAACCTTATAGAAAACAGAATCCAGAAATAGTCATCTACCAGTACATGGATGATCTATATGTAGGATCTGATTTACATATAGAGCAACATAGAGAAAAGGTGGAAGAATTAAGAGCTCATCTATTAAAGTGGGGCTTTACTACACCTGACAAAAAGCATCAAAAAGAACCACCATTCCTTTGGATGGGATATGAGCTCCATCCAGACAAATGGACAGTCCAGCCCATACAGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAATTAGTAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ATAGTAAGAATGTATAGCCCTGTCAGTATTCTAGATATAAAGCAAGGACCAAAAGAACCATTTAGAGATTATGTGGACAGATTTTACAAAACTCTAAGAGCTGAACAAGCAACCCAAGATGTAAAAAATTGGATGACAGAGACCTTGCTAGTGCAAAATGCCAACCCAGATTGTAAGCAAATTTTAAGAGCTCTGGGTCCAGGGGCAACCTTAGAAGAAATGATGACAGCCTGCCAGGGAGTAGGGGGCCCCTCTCATAAAGCCAGAGTATTGGCAGAAGCAATGAGTCAGGCAAACACCACTGTTATGATGCAAAGAGGTAATGTTAAGATTCAGAAAAGAATTGTGAAATGCTTTAACTGTGGCAAGGAAGGTCACATAGCAAGAAACTGTAGAGCCCCTAGAAGAAAAGGCTGTTGGAAATGTGGGCAAGAAGGACACCAACAGAAAAACTGCCCCGATATGCAACGGGCGAATTTTTTAGGGAAAATCTGGCCTCCCCGCAAAGGGAGGCCAGGGAATTTCCTCCAGAAGAGACCAGAACCACCAGAACCAAGTGCCCCACCAATAGAGAGTTTTGGGTTTCAGGATCAGAAAATA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | ACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGAAGCCAAAGGAACAGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGTAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAAAAAAAAAA | [
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Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAAT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGAT | [
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] | viral_gRNA | Lavender,2015 |
Leppek, 2021, Nluc mRNA DMS in vitro | GGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGTGGCTAGTAAGCCTCGCCATCGTAACAGCCTGCGCCGGCGCCATGGCCGTCTACCCATACGATGTACCAGACTACGCCGGCTACCCCTACGACGTCCCAGACTACGCAGGCTCCTACCCATACGACGTCCCAGACTACGCAGGATCAGGCGTCTTCACACTCGAAGACTTCGTTGGAGACTGGCGACAGACAGCCGGATACAACCTAGACCAAGTCCTAGAGCAAGGAGGAGTATCCAGTTTGTTCCAAAACCTCGGAGTCTCCGTAACACCAATCCAAAGAATAGTCCTATCCGGAGAGAACGGATTGAAGATCGACATCCACGTCATCATCCCGTACGAAGGCCTCAGCGGCGACCAAATGGGCCAAATCGAAAAGATATTCAAAGTAGTATACCCAGTAGACGACCACCACTTCAAGGTAATCCTCCACTACGGCACACTCGTAATAGACGGGGTAACTCCAAACATGATCGACTACTTCGGGCGCCCCTACGAGGGCATCGCCGTATTCGATGGCAAGAAGATCACCGTAACAGGAACCC | [
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922,
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924,
925,
926,
927
] | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Mauger,2019 U_L1 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCGAAAAACATCAAAAAAGGGCCTGCGCCTTTTTACCCTCTGGAGGACGGGACCGCGGGGGAGCAACTGCACAAAGCGATGAAAAGGTACGCGCTGGTACCTGGGACCATCGCGTTTACCGACGCGCACATCGAGGTAGACATCACCTACGCGGAGTACTTTGAGATGAGCGTAAGGCTGGCGGAGGCGATGAAAAGGTACGGGCTGAACACCAACCACAGGATCGTAGTATGCAGCGAGAACAGCCTGCAATTTTTTATGCCTGTACTGGGGGCGCTGTTTATCGGGGTAGCGGTAGCGCCTGCGAACGACATCTACAACGAGAGGGAGCTGCTGAACAGCATGGGGATCAGCCAACCTACCGTAGTATTTGTAAGCAAAAAAGGGCTGCAAAAAATCCTGAACGTACAAAAAAAACTGCCTATCATCCAAAAAATCATCATCATGGACAGCAAAACCGACTACCAAGGGTTTCAAAGCATGTACACCTTTGTAACCAGCCACCTGCCTCCTGGGTTTAACGAGTACGACTTTGTACCTGAGA | [
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599
] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | AACGAGTACGACTTTGTACCTGAGAGCTTTGACAGGGACAAAACCATCGCGCTGATCATGAACAGCAGCGGGAGCACCGGGCTGCCTAAAGGGGTAGCGCTGCCTCACAGGACCGCGTGCGTAAGGTTTAGCCACGCGAGGGACCCTATCTTTGGGAACCAAATCATCCCTGACACCGCGATCCTGAGCGTAGTACCTTTTCACCACGGGTTTGGGATGTTTACCACCCTGGGGTACCTGATCTGCGGGTTTAGGGTAGTACTGATGTACAGGTTTGAGGAGGAGCTGTTTCTGAGGAGCCTGCAAGACTACAAAATCCAAAGCGCGCTGCTGGTACCTACCCTGTTTAGCTTTTTTGCGAAAAGCACCCTGATCGACAAATACGACCTGAGCAACCTGCACGAGATCGCGAGCGGGGGGGCGCCTCTGAGCAAAGAGGTAGGGGAGGCGGTAGCGAAAAGGTTTCACCTGCCTGGGATCAGGCAAGGGTACGGGCTGACCGAGACCACCAGCGCGATCCTGATCACCCCTGAGGGGGACGACAAACCTGGGGCGGTAGGGAAAGTAGTACCTTTTTTTGAGGCGAAAGTAGTAGACCTG | [
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1174
] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TTTTGAGGCGAAAGTAGTAGACCTGGACACCGGGAAAACCCTGGGGGTAAACCAAAGGGGGGAGCTGTGCGTAAGGGGGCCTATGATCATGAGCGGGTACGTAAACAACCCTGAGGCGACCAACGCGCTGATCGACAAAGACGGGTGGCTGCACAGCGGGGACATCGCGTACTGGGACGAGGACGAGCACTTTTTTATCGTAGACAGGCTGAAAAGCCTGATCAAATACAAAGGGTACCAAGTAGCGCCTGCGGAGCTGGAGAGCATCCTGCTGCAACACCCTAACATCTTTGACGCGGGGGTAGCGGGGCTGCCTGACGACGACGCGGGGGAGCTGCCTGCGGCGGTAGTAGTACTGGAGCACGGGAAAACCATGACCGAGAAAGAGATCGTAGACTACGTAGCGAGCCAAGTAACCACCGCGAAAAAACTGAGGGGGGGGGTAGTATTTGTAGACGAGGTACCTAAAGGGCTGACCGGGAAACTGGACGCGAGGAAAATCAGGGAGATCCTGATCAAAGCGAAAAAAGGGGGGAAAATCGCGGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCC | [
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1745,
1746,
1747,
1748,
1749
] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
1.230776,
1.141336,
-0.0049949999999999994,
0.507566,
0.285105,
0.20268799999999998,
0.30272000000000004,
0.26306599999999997,
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1.272362,
null,
0.535744,
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0.545372,
0.323141,
null,
0.16563899999999998,
null,
0,
null,
null,
0,
null,
0.10531599999999999,
null,
-0.413255,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
0,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749,
1750,
1751,
1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764,
1765,
1766,
1767,
1768,
1769,
1770,
1771,
1772,
1773,
1774,
1775,
1776,
1777,
1778,
1779,
1780,
1781,
1782,
1783,
1784,
1785,
1786,
1787,
1788,
1789,
1790,
1791,
1792,
1793,
1794,
1795,
1796,
1797,
1798,
1799,
1800,
1801,
1802,
1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCAAAGAATATAAAGAAGGGACCCGCACCCTTCTATCCCCTAGAGGACGGAACAGCAGGAGAGCAGCTACACAAGGCAATGAAGAGATATGCACTAGTACCCGGAACAATAGCATTCACAGACGCACACATAGAGGTAGACATAACATATGCAGAGTATTTCGAGATGTCTGTAAGACTAGCAGAGGCAATGAAGAGATATGGACTAAATACAAATCACAGAATAGTAGTATGCTCTGAGAATTCTCTACAGTTCTTCATGCCCGTACTAGGAGCACTATTCATAGGAGTAGCAGTAGCACCCGCAAATGACATATATAATGAGAGAGAGCTACTAAATTCTATGGGAATATCTCAGCCCACAGTAGTATTCGTATCTAAGAAGGGACTACAGAAGATACTAAATGTACAGAAGAAGCTACCCATAATACAGAAGATAATAATAATGGACTCTAAGACAGACTATCAGGGATTCCAGTCTATGTATACATTCGTAACATCTCACCTACCCCCCGGATTCAATGAGTATGACTTCGTACCCGAGT | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
0.316897,
0.630027,
0.331104,
2.418702,
4.909483,
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | AATGAGTATGACTTCGTACCCGAGTCTTTCGACAGAGACAAGACAATAGCACTAATAATGAATTCTTCTGGATCTACAGGACTACCCAAGGGAGTAGCACTACCCCACAGAACAGCATGCGTAAGATTCTCTCACGCAAGAGACCCCATATTCGGAAATCAGATAATACCCGACACAGCAATACTATCTGTAGTACCCTTCCACCACGGATTCGGAATGTTCACAACACTAGGATATCTAATATGCGGATTCAGAGTAGTACTAATGTATAGATTCGAGGAGGAGCTATTCCTAAGATCTCTACAGGACTATAAGATACAGTCTGCACTACTAGTACCCACACTATTCTCTTTCTTCGCAAAGTCTACACTAATAGACAAGTATGACCTATCTAATCTACACGAGATAGCATCTGGAGGAGCACCCCTATCTAAGGAGGTAGGAGAGGCAGTAGCAAAGAGATTCCACCTACCCGGAATAAGACAGGGATATGGACTAACAGAGACAACATCTGCAATACTAATAACACCCGAGGGAGACGACAAGCCCGGAGCAGTAGGAAAGGTAGTACCCTTCTTCGAGGCAAAGGTAGTAGACCTA | [
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1095,
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1099,
1100,
1101,
1102,
1103,
1104,
1105,
1106,
1107,
1108,
1109,
1110,
1111,
1112,
1113,
1114,
1115,
1116,
1117,
1118,
1119,
1120,
1121,
1122,
1123,
1124,
1125,
1126,
1127,
1128,
1129,
1130,
1131,
1132,
1133,
1134,
1135,
1136,
1137,
1138,
1139,
1140,
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1163,
1164,
1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174
] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
0.642999,
0.611047,
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null,
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null,
0,
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null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
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1740,
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1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | CTTCGAGGCAAAGGTAGTAGACCTAGACACAGGAAAGACACTAGGAGTAAATCAGAGAGGAGAGCTATGCGTAAGAGGACCCATGATAATGTCTGGATATGTAAATAATCCCGAGGCAACAAATGCACTAATAGACAAGGACGGATGGCTACACTCTGGAGACATAGCATATTGGGACGAGGACGAGCACTTCTTCATAGTAGACAGACTAAAGTCTCTAATAAAGTATAAGGGATATCAGGTAGCACCCGCAGAGCTAGAGTCTATACTACTACAGCACCCCAATATATTCGACGCAGGAGTAGCAGGACTACCCGACGACGACGCAGGAGAGCTACCCGCAGCAGTAGTAGTACTAGAGCACGGAAAGACAATGACAGAGAAGGAGATAGTAGACTATGTAGCATCTCAGGTAACAACAGCAAAGAAGCTAAGAGGAGGAGTAGTATTCGTAGACGAGGTACCCAAGGGACTAACAGGAAAGCTAGACGCAAGAAAGATAAGAGAGATACTAATAAAGGCAAAGAAGGGAGGAAAGATAGCAGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | AATGAATACGATTTCGTCCCAGAATCGTTCGATCGAGATAAGACAATAGCGCTCATAATGAATTCGTCGGGCTCGACAGGCCTCCCAAAGGGCGTCGCGCTCCCACATCGAACAGCGTGTGTCCGATTCTCGCATGCGCGAGATCCAATATTCGGCAATCAGATAATACCAGATACAGCGATACTCTCGGTCGTCCCATTCCATCATGGCTTCGGCATGTTCACAACACTCGGCTACCTCATATGTGGCTTCCGAGTCGTCCTCATGTACCGATTCGAAGAAGAACTCTTCCTCCGATCGCTCCAGGATTACAAGATACAGTCGGCGCTCCTCGTCCCAACACTCTTCTCGTTCTTCGCGAAGTCGACACTCATAGATAAGTACGATCTCTCGAATCTCCATGAAATAGCGTCGGGCGGCGCGCCACTCTCGAAGGAAGTCGGCGAAGCGGTCGCGAAGCGATTCCATCTCCCAGGCATACGACAGGGCTACGGCCTCACAGAAACAACATCGGCGATACTCATAACACCAGAAGGCGATGATAAGCCAGGCGCGGTCGGCAAGGTCGTCCCATTCTTCGAAGCGAAGGTCGTCGATCTC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGATGCGAAGAATATAAAGAAGGGCCCAGCGCCATTCTACCCACTCGAAGATGGCACAGCGGGCGAACAGCTCCATAAGGCGATGAAGCGATACGCGCTCGTCCCAGGCACAATAGCGTTCACAGATGCGCATATAGAAGTCGATATAACATACGCGGAATACTTCGAAATGTCGGTCCGACTCGCGGAAGCGATGAAGCGATACGGCCTCAATACAAATCATCGAATAGTCGTCTGTTCGGAAAATTCGCTCCAGTTCTTCATGCCAGTCCTCGGCGCGCTCTTCATAGGCGTCGCGGTCGCGCCAGCGAATGATATATACAATGAACGAGAACTCCTCAATTCGATGGGCATATCGCAGCCAACAGTCGTCTTCGTCTCGAAGAAGGGCCTCCAGAAGATACTCAATGTCCAGAAGAAGCTCCCAATAATACAGAAGATAATAATAATGGATTCGAAGACAGATTACCAGGGCTTCCAGTCGATGTACACATTCGTCACATCGCATCTCCCACCAGGCTTCAATGAATACGATTTCGTCCCAGAAT | [
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421,
422,
423,
424,
425,
426,
427,
428,
429,
430,
431,
432,
433,
434,
435,
436,
437,
438,
439,
440,
441,
442,
443,
444,
445,
446,
447,
448,
449,
450,
451,
452,
453,
454,
455,
456,
457,
458,
459,
460,
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462,
463,
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473,
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478,
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487,
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492,
493,
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495,
496,
497,
498,
499,
500,
501,
502,
503,
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505,
506,
507,
508,
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510,
511,
512,
513,
514,
515,
516,
517,
518,
519,
520,
521,
522,
523,
524,
525,
526,
527,
528,
529,
530,
531,
532,
533,
534,
535,
536,
537,
538,
539,
540,
541,
542,
543,
544,
545,
546,
547,
548,
549,
550,
551,
552,
553,
554,
555,
556,
557,
558,
559,
560,
561,
562,
563,
564,
565,
566,
567,
568,
569,
570,
571,
572,
573,
574,
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599
] | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
0.399117,
0.113567,
-0.070031,
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0.006784999999999999,
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null,
null,
null,
null,
null,
null,
null,
null,
0,
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null,
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null,
null,
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null,
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null,
null,
null,
null,
null,
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null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
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1744,
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1800,
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1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | CTTCGAAGCGAAGGTCGTCGATCTCGATACAGGCAAGACACTCGGCGTCAATCAGCGAGGCGAACTCTGTGTCCGAGGCCCAATGATAATGTCGGGCTACGTCAATAATCCAGAAGCGACAAATGCGCTCATAGATAAGGATGGCTGGCTCCATTCGGGCGATATAGCGTACTGGGATGAAGATGAACATTTCTTCATAGTCGATCGACTCAAGTCGCTCATAAAGTACAAGGGCTACCAGGTCGCGCCAGCGGAACTCGAATCGATACTCCTCCAGCATCCAAATATATTCGATGCGGGCGTCGCGGGCCTCCCAGATGATGATGCGGGCGAACTCCCAGCGGCGGTCGTCGTCCTCGAACATGGCAAGACAATGACAGAAAAGGAAATAGTCGATTACGTCGCGTCGCAGGTCACAACAGCGAAGAAGCTCCGAGGCGGCGTCGTCTTCGTCGATGAAGTCCCAAAGGGCCTCACAGGCAAGCTCGATGCGCGAAAGATACGAGAAATACTCATAAAGGCGAAGAAGGGCGGCAAGATAGCGGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCC | [
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1383,
1384,
1385,
1386,
1387,
1388,
1389,
1390,
1391,
1392,
1393,
1394,
1395,
1396,
1397,
1398,
1399,
1400,
1401,
1402,
1403,
1404,
1405,
1406,
1407,
1408,
1409,
1410,
1411,
1412,
1413,
1414,
1415,
1416,
1417,
1418,
1419,
1420,
1421,
1422,
1423,
1424,
1425,
1426,
1427,
1428,
1429,
1430,
1431,
1432,
1433,
1434,
1435,
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1439,
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1444,
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1448,
1449,
1450,
1451,
1452,
1453,
1454,
1455,
1456,
1457,
1458,
1459,
1460,
1461,
1462,
1463,
1464,
1465,
1466,
1467,
1468,
1469,
1470,
1471,
1472,
1473,
1474,
1475,
1476,
1477,
1478,
1479,
1480,
1481,
1482,
1483,
1484,
1485,
1486,
1487,
1488,
1489,
1490,
1491,
1492,
1493,
1494,
1495,
1496,
1497,
1498,
1499,
1500,
1501,
1502,
1503,
1504,
1505,
1506,
1507,
1508,
1509,
1510,
1511,
1512,
1513,
1514,
1515,
1516,
1517,
1518,
1519,
1520,
1521,
1522,
1523,
1524,
1525,
1526,
1527,
1528,
1529,
1530,
1531,
1532,
1533,
1534,
1535,
1536,
1537,
1538,
1539,
1540,
1541,
1542,
1543,
1544,
1545,
1546,
1547,
1548,
1549,
1550,
1551,
1552,
1553,
1554,
1555,
1556,
1557,
1558,
1559,
1560,
1561,
1562,
1563,
1564,
1565,
1566,
1567,
1568,
1569,
1570,
1571,
1572,
1573,
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1575,
1576,
1577,
1578,
1579,
1580,
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1598,
1599,
1600,
1601,
1602,
1603,
1604,
1605,
1606,
1607,
1608,
1609,
1610,
1611,
1612,
1613,
1614,
1615,
1616,
1617,
1618,
1619,
1620,
1621,
1622,
1623,
1624,
1625,
1626,
1627,
1628,
1629,
1630,
1631,
1632,
1633,
1634,
1635,
1636,
1637,
1638,
1639,
1640,
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1659,
1660,
1661,
1662,
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1665,
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1670,
1671,
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1675,
1676,
1677,
1678,
1679,
1680,
1681,
1682,
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1684,
1685,
1686,
1687,
1688,
1689,
1690,
1691,
1692,
1693,
1694,
1695,
1696,
1697,
1698,
1699,
1700,
1701,
1702,
1703,
1704,
1705,
1706,
1707,
1708,
1709,
1710,
1711,
1712,
1713,
1714,
1715,
1716,
1717,
1718,
1719,
1720,
1721,
1722,
1723,
1724,
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749
] | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
-0.268487,
0.524488,
-0.14521599999999998,
0.126228,
0.447382,
-0.021863,
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0.236896,
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null,
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null,
null,
null,
null,
null,
null,
0,
null,
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null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
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1743,
1744,
1745,
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1755,
1756,
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1761,
1762,
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1766,
1767,
1768,
1769,
1770,
1771,
1772,
1773,
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1775,
1776,
1777,
1778,
1779,
1780,
1781,
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1784,
1785,
1786,
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1788,
1789,
1790,
1791,
1792,
1793,
1794,
1795,
1796,
1797,
1798,
1799,
1800,
1801,
1802,
1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | TTTTGAGGCTAAGGTCGTCGACCTCGACACAGGAAAGACACTCGGAGTCAACCAGAGGGGAGAGCTCTGCGTCAGGGGACCCATGATCATGTCCGGATACGTCAACAACCCCGAGGCTACAAACGCTCTCATCGACAAGGACGGATGGCTCCACTCCGGAGACATCGCTTACTGGGACGAGGACGAGCACTTTTTTATCGTCGACAGGCTCAAGTCCCTCATCAAGTACAAGGGATACCAGGTCGCTCCCGCTGAGCTCGAGTCCATCCTCCTCCAGCACCCCAACATCTTTGACGCTGGAGTCGCTGGACTCCCCGACGACGACGCTGGAGAGCTCCCCGCTGCTGTCGTCGTCCTCGAGCACGGAAAGACAATGACAGAGAAGGAGATCGTCGACTACGTCGCTTCCCAGGTCACAACAGCTAAGAAGCTCAGGGGAGGAGTCGTCTTTGTCGACGAGGTCCCCAAGGGACTCACAGGAAAGCTCGACGCTAGGAAGATCAGGGAGATCCTCATCAAGGCTAAGAAGGGAGGAAAGATCGCTGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | AACGAGTACGACTTTGTCCCCGAGTCCTTTGACAGGGACAAGACAATCGCTCTCATCATGAACTCCTCCGGATCCACAGGACTCCCCAAGGGAGTCGCTCTCCCCCACAGGACAGCTTGCGTCAGGTTTTCCCACGCTAGGGACCCCATCTTTGGAAACCAGATCATCCCCGACACAGCTATCCTCTCCGTCGTCCCCTTTCACCACGGATTTGGAATGTTTACAACACTCGGATACCTCATCTGCGGATTTAGGGTCGTCCTCATGTACAGGTTTGAGGAGGAGCTCTTTCTCAGGTCCCTCCAGGACTACAAGATCCAGTCCGCTCTCCTCGTCCCCACACTCTTTTCCTTTTTTGCTAAGTCCACACTCATCGACAAGTACGACCTCTCCAACCTCCACGAGATCGCTTCCGGAGGAGCTCCCCTCTCCAAGGAGGTCGGAGAGGCTGTCGCTAAGAGGTTTCACCTCCCCGGAATCAGGCAGGGATACGGACTCACAGAGACAACATCCGCTATCCTCATCACACCCGAGGGAGACGACAAGCCCGGAGCTGTCGGAAAGGTCGTCCCCTTTTTTGAGGCTAAGGTCGTCGACCTC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCTAAGAACATCAAGAAGGGACCCGCTCCCTTTTACCCCCTCGAGGACGGAACAGCTGGAGAGCAGCTCCACAAGGCTATGAAGAGGTACGCTCTCGTCCCCGGAACAATCGCTTTTACAGACGCTCACATCGAGGTCGACATCACATACGCTGAGTACTTTGAGATGTCCGTCAGGCTCGCTGAGGCTATGAAGAGGTACGGACTCAACACAAACCACAGGATCGTCGTCTGCTCCGAGAACTCCCTCCAGTTTTTTATGCCCGTCCTCGGAGCTCTCTTTATCGGAGTCGCTGTCGCTCCCGCTAACGACATCTACAACGAGAGGGAGCTCCTCAACTCCATGGGAATCTCCCAGCCCACAGTCGTCTTTGTCTCCAAGAAGGGACTCCAGAAGATCCTCAACGTCCAGAAGAAGCTCCCCATCATCCAGAAGATCATCATCATGGACTCCAAGACAGACTACCAGGGATTTCAGTCCATGTACACATTTGTCACATCCCACCTCCCCCCCGGATTTAACGAGTACGACTTTGTCCCCGAGT | [
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21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
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55,
56,
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63,
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65,
66,
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68,
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529,
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531,
532,
533,
534,
535,
536,
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542,
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585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599
] | mRNA | Mauger,2019 |
Mauger,2019 U_L13 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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0.6121559999999999,
-0.229991,
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0.709031,
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null,
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null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
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1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L13 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGATGCAAAAAATATCAAAAAAGGCCCGGCACCGTTCTACCCGTTGGAGGATGGCACGGCAGGCGAGCAGTTGCACAAAGCAATGAAAAGATACGCATTGGTGCCGGGCACGATCGCATTCACGGATGCACACATCGAGGTGGATATCACGTACGCAGAGTACTTCGAGATGAGCGTGAGATTGGCAGAGGCAATGAAAAGATACGGCTTGAATACGAATCACAGAATCGTGGTGTGTAGCGAGAATAGCTTGCAGTTCTTCATGCCGGTGTTGGGCGCATTGTTCATCGGCGTGGCAGTGGCACCGGCAAATGATATCTACAATGAGAGAGAGTTGTTGAATAGCATGGGCATCAGCCAGCCGACGGTGGTGTTCGTGAGCAAAAAAGGCTTGCAGAAAATCTTGAATGTGCAGAAAAAATTGCCGATCATCCAGAAAATCATCATCATGGATAGCAAAACGGATTACCAGGGCTTCCAGAGCATGTACACGTTCGTGACGAGCCACTTGCCGCCGGGCTTCAATGAGTACGATTTCGTGCCGGAGA | [
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] | mRNA | Mauger,2019 |