Datasets:

Modalities:
Text
Formats:
json
Languages:
English
Size:
< 1K
Libraries:
Datasets
pandas
License:
SARS_0
dict
SARS_1
dict
SARS_2
dict
SARS_3
dict
SARS_4
dict
SARS_5
dict
SARS_7
dict
SARS_9
dict
SARS_10
dict
SARS_12
dict
SARS_14
dict
SARS_18
dict
SARS_19
dict
SARS_21
dict
SARS_22
dict
SARS_24
dict
SARS_25
dict
SARS_26
dict
SARS_27
dict
SARS_28
dict
SARS_29
dict
SARS_33
dict
SARS_34
dict
SARS_36
dict
SARS_37
dict
HIV_7
dict
Hepatitis_1
dict
Hepatitis_7
dict
Alphavirus_1
dict
Alphavirus_2
dict
Alphavirus_4
dict
Alphavirus_5
dict
Alphavirus_6
dict
Alphavirus_7
dict
Alphavirus_8
dict
Alphavirus_9
dict
Alphavirus_10
dict
Alphavirus_12
dict
Alphavirus_13
dict
Alphavirus_14
dict
{ "sequence": "AUUAAAGGUUUAUACCUUCCCAGGUAACAAACCAACCAACUUUCGAUCUCUUGUAGAUCUGUUCUCUAAACGAACUUUAAAAUCUGUGUGGCUGUCACUCGGCUGCAUGCUUAGUGCACUCACGCAGUAUAAUUAAUAA", "structure": [ [ 62, 72 ], [ 4, 76 ], [ 61, 73 ], [ 101, 109 ], [ 3, 77 ], [ 12, 25 ], [ 88, 121 ], [ 60, 74 ], [ 48, 54 ], [ 8, 30 ], [ 100, 110 ], [ 9, 29 ], [ 2, 78 ], [ 87, 122 ], [ 1, 79 ], [ 86, 123 ], [ 47, 55 ], [ 93, 116 ], [ 6, 32 ], [ 98, 112 ], [ 7, 31 ], [ 85, 124 ], [ 46, 56 ], [ 97, 113 ], [ 81, 129 ], [ 82, 128 ], [ 84, 125 ], [ 16, 21 ], [ 45, 57 ], [ 15, 22 ], [ 92, 117 ], [ 96, 114 ], [ 83, 126 ], [ 14, 23 ], [ 44, 58 ], [ 89, 120 ], [ 90, 119 ], [ 95, 115 ], [ 10, 28 ], [ 102, 108 ], [ 63, 71 ], [ 13, 24 ] ], "dms": [ 0, -1000, -1000, 0.0119, 0.1542, 0.2179, -1000, -1000, -1000, -1000, -1000, 0.1356, -1000, 0.0545, 0.1025, 0.1858, -1000, -1000, 0.5428, 0.7801, 1, 0.2182, -1000, -1000, -1000, 0.1813, 0.3729, 0.4522, 0.1691, 0.0937, 0.1614, 0.1353, 0.3092, 0.573, 0.6789, 1, 0.9056, 0.4137, 0.5668, 0.8611, -1000, -1000, -1000, 0.9742, -1000, 0.1896, -1000, 0.203, -1000, 0.4168, -1000, -1000, -1000, -1000, 0.1773, -1000, 0.0908, -1000, 0.2586, -1000, -1000, -1000, -1000, 0.4275, -1000, 1, -1000, 0.4988, 0.6729, 0.6707, 1, -1000, 0.1668, 0.2153, 0.3418, -1000, -1000, -1000, 0.1891, 0.2803, 0.3931, 0.274, -1000, 0.1437, -1000, -1000, -1000, -1000, -1000, -1000, -1000, 0.5467, -1000, -1000, -1000, 0.2032, 0.0945, 0.165, -1000, 0.6506, -1000, -1000, 0.1562, -1000, -1000, 0.9513, 0.5139, -1000, -1000, 0.1775, -1000, -1000, 0.1527, -1000, -1000, -1000, 0.3261, 0.1359, 0.2696, -1000, 0.4603, 0.0534, 0.2296, -1000, 0.2475, 0.1199, -1000, -1000, 0.2493, -1000, 0.311, 0.3134, -1000, -1000, 0.3184, 0.4754, -1000, 0.7606, 1 ] }
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{ "sequence": "UUAAAGAUGGCACUUGUGGCUUAGUAGAAGUUGAAAAAGGCGUUUUGCCUCAACUUGAACAGCCCUAUGUGUUCAUCAAACGUUCGGAUGCUCGAACUGCACCUCAUGGUCAUGUUAUGGUUGAGCUGGUAGCAGAACUCGAAGGCAUUCAGUACGGUCGUAGUGGUGAGACACUUGGUGUCCUUGUCCCUCAUGUGGGCGAAAUACCAGUGGCUUACCGCAAGGUUCUUCUUCGUAAGAACGGUAAUAAAGGAGCUGGUGGCCAUAGUUACGGCGCCGAUCUAAAGUCAUUUGACUUAGGCGACGAGCUUGGCACUGAUCCUUAUGAAGAUUUUCAAGA", "structure": [ [ 12, 68 ], [ 224, 241 ], [ 188, 196 ], [ 8, 73 ], [ 10, 70 ], [ 9, 72 ], [ 11, 69 ], [ 186, 198 ], [ 6, 75 ], [ 7, 74 ], [ 174, 208 ], [ 5, 76 ], [ 180, 203 ], [ 266, 309 ], [ 271, 305 ], [ 272, 304 ], [ 178, 205 ], [ 179, 204 ], [ 184, 200 ], [ 33, 49 ], [ 38, 48 ], [ 177, 206 ], [ 31, 51 ], [ 171, 211 ], [ 260, 313 ], [ 162, 220 ], [ 169, 213 ], [ 30, 52 ], [ 19, 61 ], [ 92, 140 ], [ 168, 214 ], [ 18, 62 ], [ 91, 143 ], [ 90, 144 ], [ 110, 122 ], [ 111, 121 ], [ 102, 127 ], [ 183, 201 ], [ 32, 50 ], [ 89, 145 ], [ 277, 299 ], [ 98, 132 ], [ 99, 131 ], [ 101, 128 ], [ 176, 207 ], [ 20, 60 ], [ 287, 294 ], [ 288, 293 ], [ 97, 133 ], [ 264, 310 ], [ 285, 296 ], [ 286, 295 ], [ 268, 307 ], [ 269, 306 ], [ 252, 320 ], [ 253, 319 ], [ 258, 315 ], [ 28, 54 ], [ 82, 153 ], [ 228, 237 ], [ 229, 236 ], [ 256, 317 ], [ 328, 333 ], [ 166, 216 ], [ 80, 155 ], [ 227, 238 ], [ 327, 334 ], [ 164, 218 ], [ 165, 217 ], [ 250, 322 ], [ 14, 66 ], [ 88, 146 ], [ 109, 123 ], [ 276, 300 ], [ 100, 129 ], [ 86, 148 ], [ 87, 147 ], [ 275, 301 ], [ 96, 134 ], [ 259, 314 ], [ 187, 197 ], [ 29, 53 ], [ 85, 149 ], [ 274, 302 ], [ 257, 316 ], [ 263, 311 ], [ 185, 199 ], [ 27, 55 ], [ 167, 215 ], [ 81, 154 ], [ 17, 63 ], [ 39, 47 ], [ 40, 46 ], [ 262, 312 ], [ 267, 308 ], [ 251, 321 ], [ 173, 209 ], [ 15, 65 ], [ 226, 239 ], [ 249, 323 ], [ 172, 210 ], [ 93, 139 ], [ 94, 138 ], [ 225, 240 ], [ 325, 336 ], [ 326, 335 ], [ 163, 219 ] ], "dms": [ -1000, -1000, 0.2593, 0.5651, 0.6353, -1000, 0.1288, -1000, -1000, -1000, 0.2267, 0.0993, 0.1618, -1000, -1000, -1000, -1000, -1000, -1000, 0.1825, -1000, -1000, 0.4083, -1000, -1000, 0.3825, -1000, 0.1131, 0.147, -1000, -1000, -1000, -1000, 0.0649, 0.525, 0.498, 0.7908, 0.301, -1000, -1000, 0.2241, -1000, -1000, -1000, -1000, -1000, -1000, 0.2272, 0.2179, -1000, 0.2402, 0.0886, 0.1205, 0.1296, -1000, -1000, -1000, 0.717, 0.7758, 1, 0.2749, -1000, 0.1952, 0.2252, 0.42, -1000, 0.1319, -1000, -1000, -1000, -1000, -1000, -1000, 0.1992, 0.1268, -1000, 0.1588, 0.5587, 0.6032, 0.3788, 0.2145, -1000, -1000, -1000, 0.2227, -1000, -1000, 0.1427, -1000, -1000, 0.2058, -1000, 0.33, -1000, 0.1882, 0.3737, 0.1539, -1000, -1000, 0.2005, 0.1881, 0.1457, 0.2932, -1000, 0.5802, 0.4097, -1000, -1000, -1000, -1000, 0.2913, 0.2472, -1000, -1000, -1000, -1000, 0.4976, -1000, -1000, -1000, -1000, -1000, -1000, 0.4292, -1000, 0.6407, -1000, -1000, -1000, -1000, 0.5501, -1000, 0.2125, 0.1522, -1000, 0.513, 0.4596, 0.4719, -1000, 0.3026, -1000, 0.2949, 0.3614, -1000, -1000, 0.1667, 0.1336, -1000, -1000, 0.2179, 0.4606, -1000, -1000, 0.1284, 0.2426, -1000, -1000, -1000, 0.5736, -1000, -1000, 0.6933, -1000, -1000, -1000, -1000, -1000, -1000, 0.0831, -1000, 0.1219, 0.1473, 0.0874, 0.1368, -1000, -1000, -1000, -1000, -1000, -1000, -1000, 0.5825, 0.696, -1000, -1000, -1000, -1000, 0.2039, 0.2436, 0.5408, -1000, 1, 0.6124, -1000, -1000, -1000, -1000, -1000, -1000, 0.2033, -1000, 0.2064, 0.5608, 0.1815, -1000, 0.0894, 0.1698, 0.2921, 0.1838, -1000, -1000, -1000, -1000, 0.1791, -1000, -1000, 0.0819, 0.1436, 0.2736, -1000, 0.2235, 0.742, 0.6393, -1000, -1000, -1000, -1000, 0.2261, -1000, -1000, 0.2402, -1000, -1000, 0.9128, -1000, -1000, 0.1302, 0.1117, -1000, 0.096, 0.093, 0.1768, -1000, -1000, -1000, 0.4337, 0.4746, -1000, 0.5608, 0.2767, 0.157, -1000, -1000, 0.1718, -1000, 0.6487, -1000, -1000, -1000, -1000, -1000, -1000, 0.2293, 0.2698, 0.1481, -1000, 0.1188, -1000, -1000, -1000, 0.6272, 0.1827, -1000, -1000, 0.2204, -1000, 0.161, 0.3449, -1000, 0.7029, -1000, 0.8902, -1000, 0.661, 0.3438, 0.1487, -1000, -1000, 0.1381, 1, -1000, -1000, -1000, -1000, 0.1045, 0.0963, -1000, -1000, 0.5428, -1000, -1000, 0.1324, -1000, 0.1336, 0.1122, -1000, 0.3861, -1000, 0.1681, -1000, -1000, -1000, -1000, 0.1488, 0.1915, 0.0937, -1000, -1000, 0.177, -1000, 0.1031, 0.185, -1000, -1000, 0.3689, -1000, -1000, 0.2746, 0.2376, -1000, 0.7263, -1000, -1000, -1000, -1000, 0.3263, 0.2398, 0.2627, -1000, 0.2482 ] }
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{ "sequence": "GAUCCCCGCUUACCGCGGGCAAUAUAGCAACACCAAAACUCGACGUAUUUCCGAGGAAGCGCAGUGCAUAAUGCUGCGCAGUGUUGCCAAAUAAUCACUAUA", "structure": [ [ 64, 72 ], [ 31, 81 ], [ 4, 18 ], [ 30, 82 ], [ 63, 73 ], [ 62, 74 ], [ 41, 51 ], [ 29, 83 ], [ 61, 75 ], [ 8, 14 ], [ 60, 76 ], [ 39, 53 ], [ 40, 52 ], [ 27, 85 ], [ 28, 84 ], [ 6, 16 ], [ 7, 15 ], [ 26, 86 ], [ 58, 78 ], [ 59, 77 ], [ 5, 17 ], [ 38, 54 ], [ 32, 80 ] ], "shape": [ 1.4728, 1.0131, 0.4647, 0.0255, 0.057, 0.1823, 0.1143, 0.266, 0.2347, 1.2526, 1.7654, 1.4631, 0.1882, 1.0266, 0.0529, 0.2659, 0.0451, 0.0913, -0.0095, 0.6308, 1.3553, 1.0897, 0.5357, 0.8043, 1.0389, 0.6001, 0.7948, 0.2163, 0.1593, 0.2662, 0.1, 0.2004, 0.2174, 2.0337, 0.3564, 0.9955, 1.3562, 0.9592, 0.1506, 0.1078, 0.0538, 0.4353, 0.8813, 0.2325, 2.7331, 2.4187, 2.1937, 0.0541, 1.0728, 0.4735, 1.2324, 0.1587, 0.2567, 0.1971, 0.141, 0.9057, 0.9418, 1.9277, 0.0263, 0.0243, 0.0533, 0.0934, 0.1971, 0.1022, 0.6367, 0.3116, 0.7671, 2.2698, 1.5287, 1.4888, 1.4084, 2.3219, 0.1196, 0.0802, 0.1278, -0.0269, 0.0251, 0.0749, 0.2732, 0.403, 0.0325, 0.1351, 0.1027, 0.2909, 0.2423, 0.0882, 0.062, 1.8961, 1.0153, 1.5874, 1.9385, 2.5455, 1.2832, 1.3886, 1.0474, 1.9002, 0.4153, 1.3118, 1.346, 1.439, 0.5874, 1.9169 ] }

Data types

  • sequence: 40 datapoints
  • structure: 40 datapoints
  • dms: 25 datapoints
  • shape: 15 datapoints

Conversion report

Over a total of 43 datapoints, there are:

OUTPUT

  • ALL: 40 valid datapoints
  • INCLUDED: 0 duplicate sequences with different structure / dms / shape

MODIFIED

  • 0 multiple sequences with the same reference (renamed reference)

FILTERED OUT

  • 0 invalid datapoints (ex: sequence with non-regular characters)
  • 0 datapoints with bad structures
  • 0 duplicate sequences with the same structure / dms / shape
  • 3 datapoints removed because of low AUROC (<0.7)
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