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- complex_traits_matched_9/AUROC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Borzoi_L2_L2.plus.all.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/CADD.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/CADD.plus.RawScore.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_LLR.minus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_absLLR.plus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Enformer.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Enformer_L2_L2.plus.all.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_LLR.minus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_LLR.minus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_absLLR.plus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_LLR.minus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Sei.LogisticRegression.chrom.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv +23 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv +2 -0
- complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv +2 -0
complex_traits_matched_9/AUROC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
ADDED
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chrom,n,Model,AUROC
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1,1000,Borzoi.LogisticRegression.chrom,0.689988888888889
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2,900,Borzoi.LogisticRegression.chrom,0.6590260631001371
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3,650,Borzoi.LogisticRegression.chrom,0.73612097304405
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4,400,Borzoi.LogisticRegression.chrom,0.6890277777777778
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5,510,Borzoi.LogisticRegression.chrom,0.7439446366782007
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7 |
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6,780,Borzoi.LogisticRegression.chrom,0.6135948571846007
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8 |
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7,540,Borzoi.LogisticRegression.chrom,0.7475613473555859
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8,460,Borzoi.LogisticRegression.chrom,0.6605755093467759
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9,440,Borzoi.LogisticRegression.chrom,0.6889921946740128
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10,510,Borzoi.LogisticRegression.chrom,0.6642744243666965
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11,680,Borzoi.LogisticRegression.chrom,0.6842800845828528
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12,590,Borzoi.LogisticRegression.chrom,0.7024801302307766
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13,200,Borzoi.LogisticRegression.chrom,0.6586111111111111
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14,380,Borzoi.LogisticRegression.chrom,0.6271160357032933
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15,390,Borzoi.LogisticRegression.chrom,0.7212360289283366
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16,590,Borzoi.LogisticRegression.chrom,0.7459223084043538
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17,560,Borzoi.LogisticRegression.chrom,0.6597222222222222
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18,290,Borzoi.LogisticRegression.chrom,0.67723609459638
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19,580,Borzoi.LogisticRegression.chrom,0.7142951512749373
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20,530,Borzoi.LogisticRegression.chrom,0.6013211502709545
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21,140,Borzoi.LogisticRegression.chrom,0.8219954648526077
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22,280,Borzoi.LogisticRegression.chrom,0.6873582766439909
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complex_traits_matched_9/AUROC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
ADDED
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1 |
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chrom,n,Model,AUROC
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2 |
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1,1000,Borzoi_L2_L2.plus.all,0.6667222222222223
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3 |
+
2,900,Borzoi_L2_L2.plus.all,0.6229492455418382
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4 |
+
3,650,Borzoi_L2_L2.plus.all,0.6543589743589744
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4,400,Borzoi_L2_L2.plus.all,0.6352777777777778
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5,510,Borzoi_L2_L2.plus.all,0.6739715494040753
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6,780,Borzoi_L2_L2.plus.all,0.5884651910292935
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7,540,Borzoi_L2_L2.plus.all,0.7017222984301174
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8,460,Borzoi_L2_L2.plus.all,0.6245011552194917
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9,440,Borzoi_L2_L2.plus.all,0.659263085399449
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10,510,Borzoi_L2_L2.plus.all,0.593361527617583
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11,680,Borzoi_L2_L2.plus.all,0.6602268358323722
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12,590,Borzoi_L2_L2.plus.all,0.7004692138274441
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13,200,Borzoi_L2_L2.plus.all,0.6897222222222222
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14,380,Borzoi_L2_L2.plus.all,0.6740535549399815
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15,390,Borzoi_L2_L2.plus.all,0.5860910219884579
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16,590,Borzoi_L2_L2.plus.all,0.6673688914424335
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17,560,Borzoi_L2_L2.plus.all,0.5937854308390023
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18,290,Borzoi_L2_L2.plus.all,0.7251948738274541
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19,580,Borzoi_L2_L2.plus.all,0.6283524904214559
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20,530,Borzoi_L2_L2.plus.all,0.6164313120525295
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21,140,Borzoi_L2_L2.plus.all,0.7324263038548754
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22,280,Borzoi_L2_L2.plus.all,0.6408730158730159
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complex_traits_matched_9/AUROC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
ADDED
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1 |
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chrom,n,Model,AUROC
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2 |
+
1,1000,CADD+Borzoi.LogisticRegression.chrom,0.7443222222222223
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3 |
+
2,900,CADD+Borzoi.LogisticRegression.chrom,0.731838134430727
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+
3,650,CADD+Borzoi.LogisticRegression.chrom,0.7771203155818541
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+
4,400,CADD+Borzoi.LogisticRegression.chrom,0.7110416666666668
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5,510,CADD+Borzoi.LogisticRegression.chrom,0.685761886453928
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+
6,780,CADD+Borzoi.LogisticRegression.chrom,0.6619913799400978
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7,540,CADD+Borzoi.LogisticRegression.chrom,0.790580704160951
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8,460,CADD+Borzoi.LogisticRegression.chrom,0.6946544843520269
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9,440,CADD+Borzoi.LogisticRegression.chrom,0.7416207529843893
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10,510,CADD+Borzoi.LogisticRegression.chrom,0.7246785424409415
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11,680,CADD+Borzoi.LogisticRegression.chrom,0.6463379469434832
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12,590,CADD+Borzoi.LogisticRegression.chrom,0.7774266653898942
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13,200,CADD+Borzoi.LogisticRegression.chrom,0.7147222222222223
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14,380,CADD+Borzoi.LogisticRegression.chrom,0.7003693444136657
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15,390,CADD+Borzoi.LogisticRegression.chrom,0.7246694426181605
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16,590,CADD+Borzoi.LogisticRegression.chrom,0.7750965559066679
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17,560,CADD+Borzoi.LogisticRegression.chrom,0.694409013605442
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18,290,CADD+Borzoi.LogisticRegression.chrom,0.7370854802483816
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19,580,CADD+Borzoi.LogisticRegression.chrom,0.751023913330691
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20,530,CADD+Borzoi.LogisticRegression.chrom,0.6458605276690005
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21,140,CADD+Borzoi.LogisticRegression.chrom,0.7698412698412699
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22,280,CADD+Borzoi.LogisticRegression.chrom,0.7225056689342404
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complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
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chrom,n,Model,AUROC
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2 |
+
1,1000,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7476555555555555
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3 |
+
2,900,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7472976680384088
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+
3,650,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.778750821827745
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+
4,400,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.6707638888888889
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+
5,510,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.6946046392413173
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+
6,780,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.683048433048433
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8 |
+
7,540,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7924096936442615
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+
8,460,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.6979101029195548
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+
9,440,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7462121212121212
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10,510,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7198940578410014
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11,680,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.644559784698193
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12,590,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7856937661591497
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13,200,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.705
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14,380,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7185287780855648
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15,390,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7293447293447294
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16,590,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7816400140444955
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17,560,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.6962159863945578
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18,290,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7657550535077289
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19,580,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7410490157220241
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20,530,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.6203472963885923
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21,140,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.8055555555555556
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22,280,CADD+GPN-MSA+Borzoi.LogisticRegression.chrom,0.7062074829931974
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complex_traits_matched_9/AUROC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
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chrom,n,Model,AUROC
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2 |
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1,1000,CADD+GPN-MSA.LogisticRegression.chrom,0.6823000000000001
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3 |
+
2,900,CADD+GPN-MSA.LogisticRegression.chrom,0.7408504801097393
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+
3,650,CADD+GPN-MSA.LogisticRegression.chrom,0.7403287310979618
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+
4,400,CADD+GPN-MSA.LogisticRegression.chrom,0.6261111111111112
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5,510,CADD+GPN-MSA.LogisticRegression.chrom,0.6650006407791875
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+
6,780,CADD+GPN-MSA.LogisticRegression.chrom,0.6533165315216597
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8 |
+
7,540,CADD+GPN-MSA.LogisticRegression.chrom,0.7445511354976376
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9 |
+
8,460,CADD+GPN-MSA.LogisticRegression.chrom,0.6824721697122453
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10 |
+
9,440,CADD+GPN-MSA.LogisticRegression.chrom,0.7264118457300276
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11 |
+
10,510,CADD+GPN-MSA.LogisticRegression.chrom,0.6700841556666239
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+
11,680,CADD+GPN-MSA.LogisticRegression.chrom,0.6411476355247981
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+
12,590,CADD+GPN-MSA.LogisticRegression.chrom,0.7765010054582017
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+
13,200,CADD+GPN-MSA.LogisticRegression.chrom,0.6880555555555556
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14,380,CADD+GPN-MSA.LogisticRegression.chrom,0.7617728531855956
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+
15,390,CADD+GPN-MSA.LogisticRegression.chrom,0.6825918620790415
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16,590,CADD+GPN-MSA.LogisticRegression.chrom,0.7167480609020396
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17,560,CADD+GPN-MSA.LogisticRegression.chrom,0.6392431972789115
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18,290,CADD+GPN-MSA.LogisticRegression.chrom,0.7829303738935129
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19,580,CADD+GPN-MSA.LogisticRegression.chrom,0.7260536398467433
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20,530,CADD+GPN-MSA.LogisticRegression.chrom,0.6682884379573593
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21,140,CADD+GPN-MSA.LogisticRegression.chrom,0.638888888888889
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22,280,CADD+GPN-MSA.LogisticRegression.chrom,0.6634070294784581
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complex_traits_matched_9/AUROC_by_chrom/all/CADD.LogisticRegression.chrom.csv
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chrom,n,Model,AUROC
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2 |
+
1,1000,CADD.LogisticRegression.chrom,0.7009555555555556
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3 |
+
2,900,CADD.LogisticRegression.chrom,0.7208916323731138
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+
3,650,CADD.LogisticRegression.chrom,0.740696909927679
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4,400,CADD.LogisticRegression.chrom,0.6785416666666666
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+
5,510,CADD.LogisticRegression.chrom,0.6514588406168568
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+
6,780,CADD.LogisticRegression.chrom,0.6538096281686026
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+
7,540,CADD.LogisticRegression.chrom,0.7493522328913275
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9 |
+
8,460,CADD.LogisticRegression.chrom,0.654221802142407
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10 |
+
9,440,CADD.LogisticRegression.chrom,0.7501147842056932
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11 |
+
10,510,CADD.LogisticRegression.chrom,0.6802084668289974
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12 |
+
11,680,CADD.LogisticRegression.chrom,0.6306228373702423
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13 |
+
12,590,CADD.LogisticRegression.chrom,0.7823103195122729
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14 |
+
13,200,CADD.LogisticRegression.chrom,0.7119444444444445
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+
14,380,CADD.LogisticRegression.chrom,0.7283010156971377
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16 |
+
15,390,CADD.LogisticRegression.chrom,0.6417561545766675
|
17 |
+
16,590,CADD.LogisticRegression.chrom,0.7050336748699287
|
18 |
+
17,560,CADD.LogisticRegression.chrom,0.6535572562358276
|
19 |
+
18,290,CADD.LogisticRegression.chrom,0.7989166336372043
|
20 |
+
19,580,CADD.LogisticRegression.chrom,0.664552781080724
|
21 |
+
20,530,CADD.LogisticRegression.chrom,0.6805901665282228
|
22 |
+
21,140,CADD.LogisticRegression.chrom,0.6479591836734693
|
23 |
+
22,280,CADD.LogisticRegression.chrom,0.6969954648526077
|
complex_traits_matched_9/AUROC_by_chrom/all/CADD.plus.RawScore.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,CADD.plus.RawScore,0.5968222222222221
|
3 |
+
2,900,CADD.plus.RawScore,0.66281207133059
|
4 |
+
3,650,CADD.plus.RawScore,0.6344510190664037
|
5 |
+
4,400,CADD.plus.RawScore,0.67875
|
6 |
+
5,510,CADD.plus.RawScore,0.5882566534238968
|
7 |
+
6,780,CADD.plus.RawScore,0.5819818832639346
|
8 |
+
7,540,CADD.plus.RawScore,0.6042524005486969
|
9 |
+
8,460,CADD.plus.RawScore,0.5317685360218442
|
10 |
+
9,440,CADD.plus.RawScore,0.6147842056932967
|
11 |
+
10,510,CADD.plus.RawScore,0.6904609338288692
|
12 |
+
11,680,CADD.plus.RawScore,0.5865532487504806
|
13 |
+
12,590,CADD.plus.RawScore,0.6267036930639344
|
14 |
+
13,200,CADD.plus.RawScore,0.7005555555555556
|
15 |
+
14,380,CADD.plus.RawScore,0.6048784241305017
|
16 |
+
15,390,CADD.plus.RawScore,0.598144495580393
|
17 |
+
16,590,CADD.plus.RawScore,0.6267036930639344
|
18 |
+
17,560,CADD.plus.RawScore,0.6347080498866213
|
19 |
+
18,290,CADD.plus.RawScore,0.7294226449993394
|
20 |
+
19,580,CADD.plus.RawScore,0.5349121416303343
|
21 |
+
20,530,CADD.plus.RawScore,0.6376725604208694
|
22 |
+
21,140,CADD.plus.RawScore,0.5714285714285715
|
23 |
+
22,280,CADD.plus.RawScore,0.5575396825396824
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus.LogisticRegression.chrom,0.5896333333333333
|
3 |
+
2,900,Caduceus.LogisticRegression.chrom,0.5461454046639231
|
4 |
+
3,650,Caduceus.LogisticRegression.chrom,0.620249835634451
|
5 |
+
4,400,Caduceus.LogisticRegression.chrom,0.561875
|
6 |
+
5,510,Caduceus.LogisticRegression.chrom,0.5328292537058397
|
7 |
+
6,780,Caduceus.LogisticRegression.chrom,0.5411461757615603
|
8 |
+
7,540,Caduceus.LogisticRegression.chrom,0.6176268861454046
|
9 |
+
8,460,Caduceus.LogisticRegression.chrom,0.6198277672757824
|
10 |
+
9,440,Caduceus.LogisticRegression.chrom,0.5136593204775023
|
11 |
+
10,510,Caduceus.LogisticRegression.chrom,0.5820410953052245
|
12 |
+
11,680,Caduceus.LogisticRegression.chrom,0.5092031910803537
|
13 |
+
12,590,Caduceus.LogisticRegression.chrom,0.613521018864311
|
14 |
+
13,200,Caduceus.LogisticRegression.chrom,0.5588888888888889
|
15 |
+
14,380,Caduceus.LogisticRegression.chrom,0.672976300400123
|
16 |
+
15,390,Caduceus.LogisticRegression.chrom,0.5811965811965812
|
17 |
+
16,590,Caduceus.LogisticRegression.chrom,0.5457563280028089
|
18 |
+
17,560,Caduceus.LogisticRegression.chrom,0.6680130385487528
|
19 |
+
18,290,Caduceus.LogisticRegression.chrom,0.5666534548817546
|
20 |
+
19,580,Caduceus.LogisticRegression.chrom,0.6523318800369929
|
21 |
+
20,530,Caduceus.LogisticRegression.chrom,0.5417902772833354
|
22 |
+
21,140,Caduceus.LogisticRegression.chrom,0.6615646258503401
|
23 |
+
22,280,Caduceus.LogisticRegression.chrom,0.6424319727891157
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus_Embeddings.minus.inner_product,0.45768888888888887
|
3 |
+
2,900,Caduceus_Embeddings.minus.inner_product,0.3933950617283951
|
4 |
+
3,650,Caduceus_Embeddings.minus.inner_product,0.5190006574621959
|
5 |
+
4,400,Caduceus_Embeddings.minus.inner_product,0.5498611111111111
|
6 |
+
5,510,Caduceus_Embeddings.minus.inner_product,0.49942329873125724
|
7 |
+
6,780,Caduceus_Embeddings.minus.inner_product,0.4946307253999561
|
8 |
+
7,540,Caduceus_Embeddings.minus.inner_product,0.3641975308641975
|
9 |
+
8,460,Caduceus_Embeddings.minus.inner_product,0.5474690191136314
|
10 |
+
9,440,Caduceus_Embeddings.minus.inner_product,0.5021808999081727
|
11 |
+
10,510,Caduceus_Embeddings.minus.inner_product,0.4738775684565765
|
12 |
+
11,680,Caduceus_Embeddings.minus.inner_product,0.5598327566320646
|
13 |
+
12,590,Caduceus_Embeddings.minus.inner_product,0.5981039931054295
|
14 |
+
13,200,Caduceus_Embeddings.minus.inner_product,0.653888888888889
|
15 |
+
14,380,Caduceus_Embeddings.minus.inner_product,0.5196983687288396
|
16 |
+
15,390,Caduceus_Embeddings.minus.inner_product,0.4265468624442983
|
17 |
+
16,590,Caduceus_Embeddings.minus.inner_product,0.49845191356251395
|
18 |
+
17,560,Caduceus_Embeddings.minus.inner_product,0.5833333333333333
|
19 |
+
18,290,Caduceus_Embeddings.minus.inner_product,0.5186946756506804
|
20 |
+
19,580,Caduceus_Embeddings.minus.inner_product,0.4734773417888756
|
21 |
+
20,530,Caduceus_Embeddings.minus.inner_product,0.47043234049286015
|
22 |
+
21,140,Caduceus_Embeddings.minus.inner_product,0.340702947845805
|
23 |
+
22,280,Caduceus_Embeddings.minus.inner_product,0.43154761904761907
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus_Embeddings.plus.cosine_distance,0.4836888888888889
|
3 |
+
2,900,Caduceus_Embeddings.plus.cosine_distance,0.5209259259259259
|
4 |
+
3,650,Caduceus_Embeddings.plus.cosine_distance,0.6064299802761343
|
5 |
+
4,400,Caduceus_Embeddings.plus.cosine_distance,0.525
|
6 |
+
5,510,Caduceus_Embeddings.plus.cosine_distance,0.4877611175189029
|
7 |
+
6,780,Caduceus_Embeddings.plus.cosine_distance,0.49769888231426695
|
8 |
+
7,540,Caduceus_Embeddings.plus.cosine_distance,0.5351699436061577
|
9 |
+
8,460,Caduceus_Embeddings.plus.cosine_distance,0.5127599243856332
|
10 |
+
9,440,Caduceus_Embeddings.plus.cosine_distance,0.4576159320477502
|
11 |
+
10,510,Caduceus_Embeddings.plus.cosine_distance,0.4894698620188816
|
12 |
+
11,680,Caduceus_Embeddings.plus.cosine_distance,0.5205449826989619
|
13 |
+
12,590,Caduceus_Embeddings.plus.cosine_distance,0.5408088352644514
|
14 |
+
13,200,Caduceus_Embeddings.plus.cosine_distance,0.5911111111111111
|
15 |
+
14,380,Caduceus_Embeddings.plus.cosine_distance,0.5268928901200369
|
16 |
+
15,390,Caduceus_Embeddings.plus.cosine_distance,0.5560303893637227
|
17 |
+
16,590,Caduceus_Embeddings.plus.cosine_distance,0.5522040282166683
|
18 |
+
17,560,Caduceus_Embeddings.plus.cosine_distance,0.5686649659863945
|
19 |
+
18,290,Caduceus_Embeddings.plus.cosine_distance,0.44596379970934075
|
20 |
+
19,580,Caduceus_Embeddings.plus.cosine_distance,0.5434172281675255
|
21 |
+
20,530,Caduceus_Embeddings.plus.cosine_distance,0.6129504370871407
|
22 |
+
21,140,Caduceus_Embeddings.plus.cosine_distance,0.5306122448979592
|
23 |
+
22,280,Caduceus_Embeddings.plus.cosine_distance,0.5326672335600906
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus_Embeddings.plus.euclidean_distance,0.49143333333333333
|
3 |
+
2,900,Caduceus_Embeddings.plus.euclidean_distance,0.5227434842249657
|
4 |
+
3,650,Caduceus_Embeddings.plus.euclidean_distance,0.5995003287310979
|
5 |
+
4,400,Caduceus_Embeddings.plus.euclidean_distance,0.5199305555555555
|
6 |
+
5,510,Caduceus_Embeddings.plus.euclidean_distance,0.4826776026314665
|
7 |
+
6,780,Caduceus_Embeddings.plus.euclidean_distance,0.4966031119877274
|
8 |
+
7,540,Caduceus_Embeddings.plus.euclidean_distance,0.5470964791952446
|
9 |
+
8,460,Caduceus_Embeddings.plus.euclidean_distance,0.5110796051249737
|
10 |
+
9,440,Caduceus_Embeddings.plus.euclidean_distance,0.4554063360881543
|
11 |
+
10,510,Caduceus_Embeddings.plus.euclidean_distance,0.48985432953137686
|
12 |
+
11,680,Caduceus_Embeddings.plus.euclidean_distance,0.5074971164936563
|
13 |
+
12,590,Caduceus_Embeddings.plus.euclidean_distance,0.5331801206549842
|
14 |
+
13,200,Caduceus_Embeddings.plus.euclidean_distance,0.5750000000000001
|
15 |
+
14,380,Caduceus_Embeddings.plus.euclidean_distance,0.5374730686365036
|
16 |
+
15,390,Caduceus_Embeddings.plus.euclidean_distance,0.5533640149024764
|
17 |
+
16,590,Caduceus_Embeddings.plus.euclidean_distance,0.5518529158287849
|
18 |
+
17,560,Caduceus_Embeddings.plus.euclidean_distance,0.5556618480725624
|
19 |
+
18,290,Caduceus_Embeddings.plus.euclidean_distance,0.4378385519883736
|
20 |
+
19,580,Caduceus_Embeddings.plus.euclidean_distance,0.5425089179548157
|
21 |
+
20,530,Caduceus_Embeddings.plus.euclidean_distance,0.6130691032791425
|
22 |
+
21,140,Caduceus_Embeddings.plus.euclidean_distance,0.5402494331065759
|
23 |
+
22,280,Caduceus_Embeddings.plus.euclidean_distance,0.5392573696145124
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_LLR.minus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus_LLR.minus.score,0.47973333333333334
|
3 |
+
2,900,Caduceus_LLR.minus.score,0.5033127572016461
|
4 |
+
3,650,Caduceus_LLR.minus.score,0.4980013149243918
|
5 |
+
4,400,Caduceus_LLR.minus.score,0.4527777777777778
|
6 |
+
5,510,Caduceus_LLR.minus.score,0.500085437224999
|
7 |
+
6,780,Caduceus_LLR.minus.score,0.5271659726787933
|
8 |
+
7,540,Caduceus_LLR.minus.score,0.40582609358329524
|
9 |
+
8,460,Caduceus_LLR.minus.score,0.3913831127914304
|
10 |
+
9,440,Caduceus_LLR.minus.score,0.4627525252525252
|
11 |
+
10,510,Caduceus_LLR.minus.score,0.48308342945021143
|
12 |
+
11,680,Caduceus_LLR.minus.score,0.5036284121491734
|
13 |
+
12,590,Caduceus_LLR.minus.score,0.5469054230904273
|
14 |
+
13,200,Caduceus_LLR.minus.score,0.4127777777777778
|
15 |
+
14,380,Caduceus_LLR.minus.score,0.47510772545398583
|
16 |
+
15,390,Caduceus_LLR.minus.score,0.4769522974651179
|
17 |
+
16,590,Caduceus_LLR.minus.score,0.4517858852820071
|
18 |
+
17,560,Caduceus_LLR.minus.score,0.49629747732426305
|
19 |
+
18,290,Caduceus_LLR.minus.score,0.3873034746994319
|
20 |
+
19,580,Caduceus_LLR.minus.score,0.48094200026423567
|
21 |
+
20,530,Caduceus_LLR.minus.score,0.4838020647917408
|
22 |
+
21,140,Caduceus_LLR.minus.score,0.5799319727891157
|
23 |
+
22,280,Caduceus_LLR.minus.score,0.5490362811791384
|
complex_traits_matched_9/AUROC_by_chrom/all/Caduceus_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Caduceus_absLLR.plus.score,0.47809999999999997
|
3 |
+
2,900,Caduceus_absLLR.plus.score,0.4665980795610425
|
4 |
+
3,650,Caduceus_absLLR.plus.score,0.4638527284681131
|
5 |
+
4,400,Caduceus_absLLR.plus.score,0.45649305555555564
|
6 |
+
5,510,Caduceus_absLLR.plus.score,0.440322098338246
|
7 |
+
6,780,Caduceus_absLLR.plus.score,0.4653553948425743
|
8 |
+
7,540,Caduceus_absLLR.plus.score,0.5236244474927603
|
9 |
+
8,460,Caduceus_absLLR.plus.score,0.4141199327872295
|
10 |
+
9,440,Caduceus_absLLR.plus.score,0.4374713039485767
|
11 |
+
10,510,Caduceus_absLLR.plus.score,0.4922679311375967
|
12 |
+
11,680,Caduceus_absLLR.plus.score,0.421484525182622
|
13 |
+
12,590,Caduceus_absLLR.plus.score,0.47175141242937846
|
14 |
+
13,200,Caduceus_absLLR.plus.score,0.3947222222222222
|
15 |
+
14,380,Caduceus_absLLR.plus.score,0.5114650661742074
|
16 |
+
15,390,Caduceus_absLLR.plus.score,0.38790269559500323
|
17 |
+
16,590,Caduceus_absLLR.plus.score,0.44316767212486835
|
18 |
+
17,560,Caduceus_absLLR.plus.score,0.5028698979591837
|
19 |
+
18,290,Caduceus_absLLR.plus.score,0.5173074382349055
|
20 |
+
19,580,Caduceus_absLLR.plus.score,0.4998843968820187
|
21 |
+
20,530,Caduceus_absLLR.plus.score,0.47515921047426923
|
22 |
+
21,140,Caduceus_absLLR.plus.score,0.4719387755102041
|
23 |
+
22,280,Caduceus_absLLR.plus.score,0.5336592970521542
|
complex_traits_matched_9/AUROC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Enformer.LogisticRegression.chrom,0.7218444444444445
|
3 |
+
2,900,Enformer.LogisticRegression.chrom,0.6621947873799725
|
4 |
+
3,650,Enformer.LogisticRegression.chrom,0.7080341880341879
|
5 |
+
4,400,Enformer.LogisticRegression.chrom,0.7064583333333333
|
6 |
+
5,510,Enformer.LogisticRegression.chrom,0.7490281515656372
|
7 |
+
6,780,Enformer.LogisticRegression.chrom,0.6401124990868581
|
8 |
+
7,540,Enformer.LogisticRegression.chrom,0.740474013107758
|
9 |
+
8,460,Enformer.LogisticRegression.chrom,0.7347721067002729
|
10 |
+
9,440,Enformer.LogisticRegression.chrom,0.7295110192837466
|
11 |
+
10,510,Enformer.LogisticRegression.chrom,0.6529539920543381
|
12 |
+
11,680,Enformer.LogisticRegression.chrom,0.6747645136485967
|
13 |
+
12,590,Enformer.LogisticRegression.chrom,0.6971496057965463
|
14 |
+
13,200,Enformer.LogisticRegression.chrom,0.6380555555555556
|
15 |
+
14,380,Enformer.LogisticRegression.chrom,0.6665897199138195
|
16 |
+
15,390,Enformer.LogisticRegression.chrom,0.6777704726422675
|
17 |
+
16,590,Enformer.LogisticRegression.chrom,0.7427942162213923
|
18 |
+
17,560,Enformer.LogisticRegression.chrom,0.6917517006802721
|
19 |
+
18,290,Enformer.LogisticRegression.chrom,0.6777645659928656
|
20 |
+
19,580,Enformer.LogisticRegression.chrom,0.6896221429515128
|
21 |
+
20,530,Enformer.LogisticRegression.chrom,0.6784937304695227
|
22 |
+
21,140,Enformer.LogisticRegression.chrom,0.7998866213151927
|
23 |
+
22,280,Enformer.LogisticRegression.chrom,0.6544784580498867
|
complex_traits_matched_9/AUROC_by_chrom/all/Enformer_L2_L2.plus.all.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Enformer_L2_L2.plus.all,0.6277777777777777
|
3 |
+
2,900,Enformer_L2_L2.plus.all,0.6406172839506172
|
4 |
+
3,650,Enformer_L2_L2.plus.all,0.6748717948717949
|
5 |
+
4,400,Enformer_L2_L2.plus.all,0.6870833333333334
|
6 |
+
5,510,Enformer_L2_L2.plus.all,0.6427442436669657
|
7 |
+
6,780,Enformer_L2_L2.plus.all,0.6295017897582001
|
8 |
+
7,540,Enformer_L2_L2.plus.all,0.7041228471269624
|
9 |
+
8,460,Enformer_L2_L2.plus.all,0.685202688510817
|
10 |
+
9,440,Enformer_L2_L2.plus.all,0.6957070707070707
|
11 |
+
10,510,Enformer_L2_L2.plus.all,0.5908838480926139
|
12 |
+
11,680,Enformer_L2_L2.plus.all,0.6596741637831603
|
13 |
+
12,590,Enformer_L2_L2.plus.all,0.6559417791822273
|
14 |
+
13,200,Enformer_L2_L2.plus.all,0.6566666666666667
|
15 |
+
14,380,Enformer_L2_L2.plus.all,0.7169128962757771
|
16 |
+
15,390,Enformer_L2_L2.plus.all,0.5572357367229162
|
17 |
+
16,590,Enformer_L2_L2.plus.all,0.6406843499632927
|
18 |
+
17,560,Enformer_L2_L2.plus.all,0.5894274376417232
|
19 |
+
18,290,Enformer_L2_L2.plus.all,0.6992997753996565
|
20 |
+
19,580,Enformer_L2_L2.plus.all,0.6314242304135289
|
21 |
+
20,530,Enformer_L2_L2.plus.all,0.617064198409873
|
22 |
+
21,140,Enformer_L2_L2.plus.all,0.7120181405895692
|
23 |
+
22,280,Enformer_L2_L2.plus.all,0.643140589569161
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7226555555555556
|
3 |
+
2,900,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7148971193415637
|
4 |
+
3,650,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7641814595660749
|
5 |
+
4,400,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6392361111111111
|
6 |
+
5,510,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7109658678286129
|
7 |
+
6,780,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6622470596829572
|
8 |
+
7,540,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7712238987959152
|
9 |
+
8,460,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7104074774207099
|
10 |
+
9,440,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7522382920110193
|
11 |
+
10,510,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7071211927036608
|
12 |
+
11,680,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6538831218762015
|
13 |
+
12,590,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7552746656452487
|
14 |
+
13,200,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6733333333333333
|
15 |
+
14,380,GPN-MSA+Borzoi.LogisticRegression.chrom,0.675207756232687
|
16 |
+
15,390,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7101322229527358
|
17 |
+
16,590,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7665741006734974
|
18 |
+
17,560,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6826814058956915
|
19 |
+
18,290,GPN-MSA+Borzoi.LogisticRegression.chrom,0.7295547628484608
|
20 |
+
19,580,GPN-MSA+Borzoi.LogisticRegression.chrom,0.722849782005549
|
21 |
+
20,530,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6180135279458883
|
22 |
+
21,140,GPN-MSA+Borzoi.LogisticRegression.chrom,0.8231292517006802
|
23 |
+
22,280,GPN-MSA+Borzoi.LogisticRegression.chrom,0.6792800453514739
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA.LogisticRegression.chrom,0.6341777777777777
|
3 |
+
2,900,GPN-MSA.LogisticRegression.chrom,0.6991220850480109
|
4 |
+
3,650,GPN-MSA.LogisticRegression.chrom,0.6885733070348455
|
5 |
+
4,400,GPN-MSA.LogisticRegression.chrom,0.5595833333333333
|
6 |
+
5,510,GPN-MSA.LogisticRegression.chrom,0.6627365543167159
|
7 |
+
6,780,GPN-MSA.LogisticRegression.chrom,0.6387610490174593
|
8 |
+
7,540,GPN-MSA.LogisticRegression.chrom,0.7151348879743941
|
9 |
+
8,460,GPN-MSA.LogisticRegression.chrom,0.7122453266120562
|
10 |
+
9,440,GPN-MSA.LogisticRegression.chrom,0.7066115702479339
|
11 |
+
10,510,GPN-MSA.LogisticRegression.chrom,0.6526549617668418
|
12 |
+
11,680,GPN-MSA.LogisticRegression.chrom,0.6058487120338331
|
13 |
+
12,590,GPN-MSA.LogisticRegression.chrom,0.7149605796546331
|
14 |
+
13,200,GPN-MSA.LogisticRegression.chrom,0.5955555555555555
|
15 |
+
14,380,GPN-MSA.LogisticRegression.chrom,0.685672514619883
|
16 |
+
15,390,GPN-MSA.LogisticRegression.chrom,0.6898969975893053
|
17 |
+
16,590,GPN-MSA.LogisticRegression.chrom,0.6673688914424335
|
18 |
+
17,560,GPN-MSA.LogisticRegression.chrom,0.6280824829931972
|
19 |
+
18,290,GPN-MSA.LogisticRegression.chrom,0.7216276919011758
|
20 |
+
19,580,GPN-MSA.LogisticRegression.chrom,0.6691108468754129
|
21 |
+
20,530,GPN-MSA.LogisticRegression.chrom,0.6877892488430045
|
22 |
+
21,140,GPN-MSA.LogisticRegression.chrom,0.6207482993197279
|
23 |
+
22,280,GPN-MSA.LogisticRegression.chrom,0.5279195011337868
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA_Embeddings.minus.inner_product,0.5980500000000001
|
3 |
+
2,900,GPN-MSA_Embeddings.minus.inner_product,0.5678532235939644
|
4 |
+
3,650,GPN-MSA_Embeddings.minus.inner_product,0.5747271531886916
|
5 |
+
4,400,GPN-MSA_Embeddings.minus.inner_product,0.5098611111111111
|
6 |
+
5,510,GPN-MSA_Embeddings.minus.inner_product,0.6036353539237046
|
7 |
+
6,780,GPN-MSA_Embeddings.minus.inner_product,0.6137500913141939
|
8 |
+
7,540,GPN-MSA_Embeddings.minus.inner_product,0.5976794695930497
|
9 |
+
8,460,GPN-MSA_Embeddings.minus.inner_product,0.5488605335013652
|
10 |
+
9,440,GPN-MSA_Embeddings.minus.inner_product,0.608098025711662
|
11 |
+
10,510,GPN-MSA_Embeddings.minus.inner_product,0.5920586099363493
|
12 |
+
11,680,GPN-MSA_Embeddings.minus.inner_product,0.5616109188773549
|
13 |
+
12,590,GPN-MSA_Embeddings.minus.inner_product,0.673912349580261
|
14 |
+
13,200,GPN-MSA_Embeddings.minus.inner_product,0.5519444444444445
|
15 |
+
14,380,GPN-MSA_Embeddings.minus.inner_product,0.6645121575869498
|
16 |
+
15,390,GPN-MSA_Embeddings.minus.inner_product,0.4992329607714223
|
17 |
+
16,590,GPN-MSA_Embeddings.minus.inner_product,0.7170353346739443
|
18 |
+
17,560,GPN-MSA_Embeddings.minus.inner_product,0.5802862811791383
|
19 |
+
18,290,GPN-MSA_Embeddings.minus.inner_product,0.6514731140177038
|
20 |
+
19,580,GPN-MSA_Embeddings.minus.inner_product,0.5456797463337297
|
21 |
+
20,530,GPN-MSA_Embeddings.minus.inner_product,0.5391400656619595
|
22 |
+
21,140,GPN-MSA_Embeddings.minus.inner_product,0.5249433106575964
|
23 |
+
22,280,GPN-MSA_Embeddings.minus.inner_product,0.5950963718820862
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA_Embeddings.plus.cosine_distance,0.5844333333333332
|
3 |
+
2,900,GPN-MSA_Embeddings.plus.cosine_distance,0.546310013717421
|
4 |
+
3,650,GPN-MSA_Embeddings.plus.cosine_distance,0.5530309007232084
|
5 |
+
4,400,GPN-MSA_Embeddings.plus.cosine_distance,0.4902083333333333
|
6 |
+
5,510,GPN-MSA_Embeddings.plus.cosine_distance,0.592165406467598
|
7 |
+
6,780,GPN-MSA_Embeddings.plus.cosine_distance,0.5848674117904887
|
8 |
+
7,540,GPN-MSA_Embeddings.plus.cosine_distance,0.5754458161865569
|
9 |
+
8,460,GPN-MSA_Embeddings.plus.cosine_distance,0.5375446334803613
|
10 |
+
9,440,GPN-MSA_Embeddings.plus.cosine_distance,0.5849403122130395
|
11 |
+
10,510,GPN-MSA_Embeddings.plus.cosine_distance,0.5528215643555897
|
12 |
+
11,680,GPN-MSA_Embeddings.plus.cosine_distance,0.5327758554402153
|
13 |
+
12,590,GPN-MSA_Embeddings.plus.cosine_distance,0.6425037505186887
|
14 |
+
13,200,GPN-MSA_Embeddings.plus.cosine_distance,0.5186111111111111
|
15 |
+
14,380,GPN-MSA_Embeddings.plus.cosine_distance,0.6506617420744845
|
16 |
+
15,390,GPN-MSA_Embeddings.plus.cosine_distance,0.5094601504857915
|
17 |
+
16,590,GPN-MSA_Embeddings.plus.cosine_distance,0.6662836349707938
|
18 |
+
17,560,GPN-MSA_Embeddings.plus.cosine_distance,0.573483560090703
|
19 |
+
18,290,GPN-MSA_Embeddings.plus.cosine_distance,0.6411679217862333
|
20 |
+
19,580,GPN-MSA_Embeddings.plus.cosine_distance,0.5126172545910952
|
21 |
+
20,530,GPN-MSA_Embeddings.plus.cosine_distance,0.5032237648827182
|
22 |
+
21,140,GPN-MSA_Embeddings.plus.cosine_distance,0.5260770975056689
|
23 |
+
22,280,GPN-MSA_Embeddings.plus.cosine_distance,0.5882936507936508
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA_Embeddings.plus.euclidean_distance,0.5842444444444443
|
3 |
+
2,900,GPN-MSA_Embeddings.plus.euclidean_distance,0.5463511659807956
|
4 |
+
3,650,GPN-MSA_Embeddings.plus.euclidean_distance,0.5523471400394477
|
5 |
+
4,400,GPN-MSA_Embeddings.plus.euclidean_distance,0.49041666666666667
|
6 |
+
5,510,GPN-MSA_Embeddings.plus.euclidean_distance,0.5925498739800931
|
7 |
+
6,780,GPN-MSA_Embeddings.plus.euclidean_distance,0.5847943604353861
|
8 |
+
7,540,GPN-MSA_Embeddings.plus.euclidean_distance,0.5748361530254534
|
9 |
+
8,460,GPN-MSA_Embeddings.plus.euclidean_distance,0.5372820835958831
|
10 |
+
9,440,GPN-MSA_Embeddings.plus.euclidean_distance,0.5847107438016529
|
11 |
+
10,510,GPN-MSA_Embeddings.plus.euclidean_distance,0.5527361271305908
|
12 |
+
11,680,GPN-MSA_Embeddings.plus.euclidean_distance,0.5326557093425606
|
13 |
+
12,590,GPN-MSA_Embeddings.plus.euclidean_distance,0.6422483960547735
|
14 |
+
13,200,GPN-MSA_Embeddings.plus.euclidean_distance,0.518888888888889
|
15 |
+
14,380,GPN-MSA_Embeddings.plus.euclidean_distance,0.6506617420744846
|
16 |
+
15,390,GPN-MSA_Embeddings.plus.euclidean_distance,0.509167945065381
|
17 |
+
16,590,GPN-MSA_Embeddings.plus.euclidean_distance,0.6660601998148681
|
18 |
+
17,560,GPN-MSA_Embeddings.plus.euclidean_distance,0.5732355442176871
|
19 |
+
18,290,GPN-MSA_Embeddings.plus.euclidean_distance,0.6415642753335975
|
20 |
+
19,580,GPN-MSA_Embeddings.plus.euclidean_distance,0.5124851367419738
|
21 |
+
20,530,GPN-MSA_Embeddings.plus.euclidean_distance,0.5033028756773862
|
22 |
+
21,140,GPN-MSA_Embeddings.plus.euclidean_distance,0.5272108843537415
|
23 |
+
22,280,GPN-MSA_Embeddings.plus.euclidean_distance,0.5881519274376418
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA_LLR.minus.score,0.6053111111111111
|
3 |
+
2,900,GPN-MSA_LLR.minus.score,0.6073593964334705
|
4 |
+
3,650,GPN-MSA_LLR.minus.score,0.5544247205785668
|
5 |
+
4,400,GPN-MSA_LLR.minus.score,0.541076388888889
|
6 |
+
5,510,GPN-MSA_LLR.minus.score,0.5904780212738691
|
7 |
+
6,780,GPN-MSA_LLR.minus.score,0.5462323763605814
|
8 |
+
7,540,GPN-MSA_LLR.minus.score,0.522671848803536
|
9 |
+
8,460,GPN-MSA_LLR.minus.score,0.5643509766855703
|
10 |
+
9,440,GPN-MSA_LLR.minus.score,0.607122359963269
|
11 |
+
10,510,GPN-MSA_LLR.minus.score,0.6259344696484259
|
12 |
+
11,680,GPN-MSA_LLR.minus.score,0.5991325451749328
|
13 |
+
12,590,GPN-MSA_LLR.minus.score,0.6456637620096396
|
14 |
+
13,200,GPN-MSA_LLR.minus.score,0.5986111111111111
|
15 |
+
14,380,GPN-MSA_LLR.minus.score,0.6432748538011696
|
16 |
+
15,390,GPN-MSA_LLR.minus.score,0.5880268828986778
|
17 |
+
16,590,GPN-MSA_LLR.minus.score,0.5074850777235149
|
18 |
+
17,560,GPN-MSA_LLR.minus.score,0.5533056972789115
|
19 |
+
18,290,GPN-MSA_LLR.minus.score,0.6621746597965384
|
20 |
+
19,580,GPN-MSA_LLR.minus.score,0.5465385123530189
|
21 |
+
20,530,GPN-MSA_LLR.minus.score,0.5481191408567699
|
22 |
+
21,140,GPN-MSA_LLR.minus.score,0.7488662131519275
|
23 |
+
22,280,GPN-MSA_LLR.minus.score,0.48639455782312924
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN-MSA_absLLR.plus.score,0.6131
|
3 |
+
2,900,GPN-MSA_absLLR.plus.score,0.6359259259259259
|
4 |
+
3,650,GPN-MSA_absLLR.plus.score,0.6236817882971729
|
5 |
+
4,400,GPN-MSA_absLLR.plus.score,0.5805555555555555
|
6 |
+
5,510,GPN-MSA_absLLR.plus.score,0.6267034046734162
|
7 |
+
6,780,GPN-MSA_absLLR.plus.score,0.5493279275330557
|
8 |
+
7,540,GPN-MSA_absLLR.plus.score,0.5877724432251181
|
9 |
+
8,460,GPN-MSA_absLLR.plus.score,0.5803927746271792
|
10 |
+
9,440,GPN-MSA_absLLR.plus.score,0.6775424701561065
|
11 |
+
10,510,GPN-MSA_absLLR.plus.score,0.6916356956726046
|
12 |
+
11,680,GPN-MSA_absLLR.plus.score,0.5479142637447136
|
13 |
+
12,590,GPN-MSA_absLLR.plus.score,0.6537074276229691
|
14 |
+
13,200,GPN-MSA_absLLR.plus.score,0.49000000000000005
|
15 |
+
14,380,GPN-MSA_absLLR.plus.score,0.5831409664512158
|
16 |
+
15,390,GPN-MSA_absLLR.plus.score,0.6391993571480751
|
17 |
+
16,590,GPN-MSA_absLLR.plus.score,0.5722333939800185
|
18 |
+
17,560,GPN-MSA_absLLR.plus.score,0.5989760487528345
|
19 |
+
18,290,GPN-MSA_absLLR.plus.score,0.642356982428326
|
20 |
+
19,580,GPN-MSA_absLLR.plus.score,0.5544655833003038
|
21 |
+
20,530,GPN-MSA_absLLR.plus.score,0.6914283453977295
|
22 |
+
21,140,GPN-MSA_absLLR.plus.score,0.5980725623582765
|
23 |
+
22,280,GPN-MSA_absLLR.plus.score,0.5587443310657596
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final.LogisticRegression.chrom,0.6260222222222221
|
3 |
+
2,900,GPN_final.LogisticRegression.chrom,0.6028669410150892
|
4 |
+
3,650,GPN_final.LogisticRegression.chrom,0.5892965154503615
|
5 |
+
4,400,GPN_final.LogisticRegression.chrom,0.6572222222222223
|
6 |
+
5,510,GPN_final.LogisticRegression.chrom,0.5874663590926567
|
7 |
+
6,780,GPN_final.LogisticRegression.chrom,0.571827744904668
|
8 |
+
7,540,GPN_final.LogisticRegression.chrom,0.6593507087334248
|
9 |
+
8,460,GPN_final.LogisticRegression.chrom,0.5921550094517959
|
10 |
+
9,440,GPN_final.LogisticRegression.chrom,0.6636822773186409
|
11 |
+
10,510,GPN_final.LogisticRegression.chrom,0.6339014908795763
|
12 |
+
11,680,GPN_final.LogisticRegression.chrom,0.5899894271434064
|
13 |
+
12,590,GPN_final.LogisticRegression.chrom,0.6801046953302053
|
14 |
+
13,200,GPN_final.LogisticRegression.chrom,0.6297222222222222
|
15 |
+
14,380,GPN_final.LogisticRegression.chrom,0.5630963373345645
|
16 |
+
15,390,GPN_final.LogisticRegression.chrom,0.636204251588867
|
17 |
+
16,590,GPN_final.LogisticRegression.chrom,0.6514092374477322
|
18 |
+
17,560,GPN_final.LogisticRegression.chrom,0.5960175736961452
|
19 |
+
18,290,GPN_final.LogisticRegression.chrom,0.622671422909235
|
20 |
+
19,580,GPN_final.LogisticRegression.chrom,0.6444378385519883
|
21 |
+
20,530,GPN_final.LogisticRegression.chrom,0.6098651160950912
|
22 |
+
21,140,GPN_final.LogisticRegression.chrom,0.6281179138321995
|
23 |
+
22,280,GPN_final.LogisticRegression.chrom,0.6645408163265306
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final_Embeddings.minus.inner_product,0.5458888888888889
|
3 |
+
2,900,GPN_final_Embeddings.minus.inner_product,0.5874897119341563
|
4 |
+
3,650,GPN_final_Embeddings.minus.inner_product,0.5473241288625904
|
5 |
+
4,400,GPN_final_Embeddings.minus.inner_product,0.5347222222222222
|
6 |
+
5,510,GPN_final_Embeddings.minus.inner_product,0.5042932205561963
|
7 |
+
6,780,GPN_final_Embeddings.minus.inner_product,0.5584410840821097
|
8 |
+
7,540,GPN_final_Embeddings.minus.inner_product,0.6123304374333182
|
9 |
+
8,460,GPN_final_Embeddings.minus.inner_product,0.5103444654484353
|
10 |
+
9,440,GPN_final_Embeddings.minus.inner_product,0.6144398530762166
|
11 |
+
10,510,GPN_final_Embeddings.minus.inner_product,0.5386389850057669
|
12 |
+
11,680,GPN_final_Embeddings.minus.inner_product,0.538134371395617
|
13 |
+
12,590,GPN_final_Embeddings.minus.inner_product,0.5194228989115516
|
14 |
+
13,200,GPN_final_Embeddings.minus.inner_product,0.5952777777777778
|
15 |
+
14,380,GPN_final_Embeddings.minus.inner_product,0.5264696829793782
|
16 |
+
15,390,GPN_final_Embeddings.minus.inner_product,0.6105632259478413
|
17 |
+
16,590,GPN_final_Embeddings.minus.inner_product,0.49861151010246096
|
18 |
+
17,560,GPN_final_Embeddings.minus.inner_product,0.5126842403628118
|
19 |
+
18,290,GPN_final_Embeddings.minus.inner_product,0.5212049147839873
|
20 |
+
19,580,GPN_final_Embeddings.minus.inner_product,0.48474038842647643
|
21 |
+
20,530,GPN_final_Embeddings.minus.inner_product,0.49535224081325896
|
22 |
+
21,140,GPN_final_Embeddings.minus.inner_product,0.5719954648526078
|
23 |
+
22,280,GPN_final_Embeddings.minus.inner_product,0.5035430839002267
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final_Embeddings.plus.cosine_distance,0.5222222222222224
|
3 |
+
2,900,GPN_final_Embeddings.plus.cosine_distance,0.5549794238683127
|
4 |
+
3,650,GPN_final_Embeddings.plus.cosine_distance,0.5728599605522683
|
5 |
+
4,400,GPN_final_Embeddings.plus.cosine_distance,0.5928472222222222
|
6 |
+
5,510,GPN_final_Embeddings.plus.cosine_distance,0.5391088897432612
|
7 |
+
6,780,GPN_final_Embeddings.plus.cosine_distance,0.5223902403389582
|
8 |
+
7,540,GPN_final_Embeddings.plus.cosine_distance,0.6107300716354214
|
9 |
+
8,460,GPN_final_Embeddings.plus.cosine_distance,0.5381747532031085
|
10 |
+
9,440,GPN_final_Embeddings.plus.cosine_distance,0.5734331955922866
|
11 |
+
10,510,GPN_final_Embeddings.plus.cosine_distance,0.5748643684053142
|
12 |
+
11,680,GPN_final_Embeddings.plus.cosine_distance,0.5374615532487504
|
13 |
+
12,590,GPN_final_Embeddings.plus.cosine_distance,0.561301030993648
|
14 |
+
13,200,GPN_final_Embeddings.plus.cosine_distance,0.47527777777777774
|
15 |
+
14,380,GPN_final_Embeddings.plus.cosine_distance,0.5396275777162204
|
16 |
+
15,390,GPN_final_Embeddings.plus.cosine_distance,0.5637373073270509
|
17 |
+
16,590,GPN_final_Embeddings.plus.cosine_distance,0.5520444316767212
|
18 |
+
17,560,GPN_final_Embeddings.plus.cosine_distance,0.5391156462585034
|
19 |
+
18,290,GPN_final_Embeddings.plus.cosine_distance,0.5403620029065928
|
20 |
+
19,580,GPN_final_Embeddings.plus.cosine_distance,0.5301063548685427
|
21 |
+
20,530,GPN_final_Embeddings.plus.cosine_distance,0.5580871009849294
|
22 |
+
21,140,GPN_final_Embeddings.plus.cosine_distance,0.6638321995464852
|
23 |
+
22,280,GPN_final_Embeddings.plus.cosine_distance,0.5420918367346939
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final_Embeddings.plus.euclidean_distance,0.5002444444444445
|
3 |
+
2,900,GPN_final_Embeddings.plus.euclidean_distance,0.5139780521262003
|
4 |
+
3,650,GPN_final_Embeddings.plus.euclidean_distance,0.5822222222222223
|
5 |
+
4,400,GPN_final_Embeddings.plus.euclidean_distance,0.6178472222222222
|
6 |
+
5,510,GPN_final_Embeddings.plus.euclidean_distance,0.544235123243197
|
7 |
+
6,780,GPN_final_Embeddings.plus.euclidean_distance,0.478614215793703
|
8 |
+
7,540,GPN_final_Embeddings.plus.euclidean_distance,0.5776367931717726
|
9 |
+
8,460,GPN_final_Embeddings.plus.euclidean_distance,0.5518273471959673
|
10 |
+
9,440,GPN_final_Embeddings.plus.euclidean_distance,0.48174931129476584
|
11 |
+
10,510,GPN_final_Embeddings.plus.euclidean_distance,0.5791789482677603
|
12 |
+
11,680,GPN_final_Embeddings.plus.euclidean_distance,0.5378219915417147
|
13 |
+
12,590,GPN_final_Embeddings.plus.euclidean_distance,0.567876408439465
|
14 |
+
13,200,GPN_final_Embeddings.plus.euclidean_distance,0.43750000000000006
|
15 |
+
14,380,GPN_final_Embeddings.plus.euclidean_distance,0.5517851646660511
|
16 |
+
15,390,GPN_final_Embeddings.plus.euclidean_distance,0.48462268975089484
|
17 |
+
16,590,GPN_final_Embeddings.plus.euclidean_distance,0.5615244661495739
|
18 |
+
17,560,GPN_final_Embeddings.plus.euclidean_distance,0.53390731292517
|
19 |
+
18,290,GPN_final_Embeddings.plus.euclidean_distance,0.544589774078478
|
20 |
+
19,580,GPN_final_Embeddings.plus.euclidean_distance,0.5382150878583696
|
21 |
+
20,530,GPN_final_Embeddings.plus.euclidean_distance,0.5549622245955461
|
22 |
+
21,140,GPN_final_Embeddings.plus.euclidean_distance,0.6825396825396826
|
23 |
+
22,280,GPN_final_Embeddings.plus.euclidean_distance,0.5109126984126984
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_LLR.minus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final_LLR.minus.score,0.5082055555555556
|
3 |
+
2,900,GPN_final_LLR.minus.score,0.5261796982167353
|
4 |
+
3,650,GPN_final_LLR.minus.score,0.4955818540433925
|
5 |
+
4,400,GPN_final_LLR.minus.score,0.47600694444444447
|
6 |
+
5,510,GPN_final_LLR.minus.score,0.5331923619120851
|
7 |
+
6,780,GPN_final_LLR.minus.score,0.5717455621301776
|
8 |
+
7,540,GPN_final_LLR.minus.score,0.4667543057460753
|
9 |
+
8,460,GPN_final_LLR.minus.score,0.4669449695442134
|
10 |
+
9,440,GPN_final_LLR.minus.score,0.5010904499540864
|
11 |
+
10,510,GPN_final_LLR.minus.score,0.48342517835020715
|
12 |
+
11,680,GPN_final_LLR.minus.score,0.532187139561707
|
13 |
+
12,590,GPN_final_LLR.minus.score,0.5663442816559737
|
14 |
+
13,200,GPN_final_LLR.minus.score,0.4295833333333333
|
15 |
+
14,380,GPN_final_LLR.minus.score,0.5228531855955678
|
16 |
+
15,390,GPN_final_LLR.minus.score,0.5702388779311856
|
17 |
+
16,590,GPN_final_LLR.minus.score,0.44612020811388814
|
18 |
+
17,560,GPN_final_LLR.minus.score,0.49798044217687076
|
19 |
+
18,290,GPN_final_LLR.minus.score,0.4559386973180076
|
20 |
+
19,580,GPN_final_LLR.minus.score,0.5037983881622407
|
21 |
+
20,530,GPN_final_LLR.minus.score,0.5340176417072109
|
22 |
+
21,140,GPN_final_LLR.minus.score,0.5623582766439909
|
23 |
+
22,280,GPN_final_LLR.minus.score,0.4760487528344671
|
complex_traits_matched_9/AUROC_by_chrom/all/GPN_final_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,GPN_final_absLLR.plus.score,0.4488444444444445
|
3 |
+
2,900,GPN_final_absLLR.plus.score,0.46339506172839506
|
4 |
+
3,650,GPN_final_absLLR.plus.score,0.4938067061143985
|
5 |
+
4,400,GPN_final_absLLR.plus.score,0.48472222222222217
|
6 |
+
5,510,GPN_final_absLLR.plus.score,0.47225426118159686
|
7 |
+
6,780,GPN_final_absLLR.plus.score,0.4384542333260283
|
8 |
+
7,540,GPN_final_absLLR.plus.score,0.5301021185794849
|
9 |
+
8,460,GPN_final_absLLR.plus.score,0.49046943919344677
|
10 |
+
9,440,GPN_final_absLLR.plus.score,0.4638429752066116
|
11 |
+
10,510,GPN_final_absLLR.plus.score,0.5179418172497757
|
12 |
+
11,680,GPN_final_absLLR.plus.score,0.45850153787005
|
13 |
+
12,590,GPN_final_absLLR.plus.score,0.5346484088224966
|
14 |
+
13,200,GPN_final_absLLR.plus.score,0.37291666666666673
|
15 |
+
14,380,GPN_final_absLLR.plus.score,0.5777931671283472
|
16 |
+
15,390,GPN_final_absLLR.plus.score,0.47242311344875443
|
17 |
+
16,590,GPN_final_absLLR.plus.score,0.47859810399310543
|
18 |
+
17,560,GPN_final_absLLR.plus.score,0.5099560657596371
|
19 |
+
18,290,GPN_final_absLLR.plus.score,0.5877262518166204
|
20 |
+
19,580,GPN_final_absLLR.plus.score,0.5717565068040693
|
21 |
+
20,530,GPN_final_absLLR.plus.score,0.5
|
22 |
+
21,140,GPN_final_absLLR.plus.score,0.47619047619047616
|
23 |
+
22,280,GPN_final_absLLR.plus.score,0.5236678004535147
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA.LogisticRegression.chrom,0.4721111111111111
|
3 |
+
2,900,HyenaDNA.LogisticRegression.chrom,0.522880658436214
|
4 |
+
3,650,HyenaDNA.LogisticRegression.chrom,0.545930309007232
|
5 |
+
4,400,HyenaDNA.LogisticRegression.chrom,0.49847222222222226
|
6 |
+
5,510,HyenaDNA.LogisticRegression.chrom,0.478961083344013
|
7 |
+
6,780,HyenaDNA.LogisticRegression.chrom,0.5254401344144933
|
8 |
+
7,540,HyenaDNA.LogisticRegression.chrom,0.47999542752629176
|
9 |
+
8,460,HyenaDNA.LogisticRegression.chrom,0.5644297416509138
|
10 |
+
9,440,HyenaDNA.LogisticRegression.chrom,0.4280876951331497
|
11 |
+
10,510,HyenaDNA.LogisticRegression.chrom,0.5490623264556367
|
12 |
+
11,680,HyenaDNA.LogisticRegression.chrom,0.575427720107651
|
13 |
+
12,590,HyenaDNA.LogisticRegression.chrom,0.6148935491078553
|
14 |
+
13,200,HyenaDNA.LogisticRegression.chrom,0.41055555555555556
|
15 |
+
14,380,HyenaDNA.LogisticRegression.chrom,0.6815943367189904
|
16 |
+
15,390,HyenaDNA.LogisticRegression.chrom,0.4917817225509533
|
17 |
+
16,590,HyenaDNA.LogisticRegression.chrom,0.5831019183504103
|
18 |
+
17,560,HyenaDNA.LogisticRegression.chrom,0.622094671201814
|
19 |
+
18,290,HyenaDNA.LogisticRegression.chrom,0.5188267934998019
|
20 |
+
19,580,HyenaDNA.LogisticRegression.chrom,0.6542145593869731
|
21 |
+
20,530,HyenaDNA.LogisticRegression.chrom,0.5552391123768838
|
22 |
+
21,140,HyenaDNA.LogisticRegression.chrom,0.44727891156462585
|
23 |
+
22,280,HyenaDNA.LogisticRegression.chrom,0.5092120181405896
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA_Embeddings.minus.inner_product,0.47563333333333335
|
3 |
+
2,900,HyenaDNA_Embeddings.minus.inner_product,0.4891906721536352
|
4 |
+
3,650,HyenaDNA_Embeddings.minus.inner_product,0.5261801446416831
|
5 |
+
4,400,HyenaDNA_Embeddings.minus.inner_product,0.5536111111111112
|
6 |
+
5,510,HyenaDNA_Embeddings.minus.inner_product,0.5245418428809432
|
7 |
+
6,780,HyenaDNA_Embeddings.minus.inner_product,0.5051683833735116
|
8 |
+
7,540,HyenaDNA_Embeddings.minus.inner_product,0.4874638012498095
|
9 |
+
8,460,HyenaDNA_Embeddings.minus.inner_product,0.5494118882587692
|
10 |
+
9,440,HyenaDNA_Embeddings.minus.inner_product,0.490702479338843
|
11 |
+
10,510,HyenaDNA_Embeddings.minus.inner_product,0.4786193344440173
|
12 |
+
11,680,HyenaDNA_Embeddings.minus.inner_product,0.5533929257977701
|
13 |
+
12,590,HyenaDNA_Embeddings.minus.inner_product,0.5438092502154553
|
14 |
+
13,200,HyenaDNA_Embeddings.minus.inner_product,0.6744444444444444
|
15 |
+
14,380,HyenaDNA_Embeddings.minus.inner_product,0.589719913819637
|
16 |
+
15,390,HyenaDNA_Embeddings.minus.inner_product,0.5265541675798087
|
17 |
+
16,590,HyenaDNA_Embeddings.minus.inner_product,0.4580101503399406
|
18 |
+
17,560,HyenaDNA_Embeddings.minus.inner_product,0.5715348639455782
|
19 |
+
18,290,HyenaDNA_Embeddings.minus.inner_product,0.5262253930506011
|
20 |
+
19,580,HyenaDNA_Embeddings.minus.inner_product,0.5444576562293566
|
21 |
+
20,530,HyenaDNA_Embeddings.minus.inner_product,0.5051619793520825
|
22 |
+
21,140,HyenaDNA_Embeddings.minus.inner_product,0.3543083900226758
|
23 |
+
22,280,HyenaDNA_Embeddings.minus.inner_product,0.5100623582766439
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA_Embeddings.plus.cosine_distance,0.44015000000000004
|
3 |
+
2,900,HyenaDNA_Embeddings.plus.cosine_distance,0.475925925925926
|
4 |
+
3,650,HyenaDNA_Embeddings.plus.cosine_distance,0.4847468770545693
|
5 |
+
4,400,HyenaDNA_Embeddings.plus.cosine_distance,0.6307291666666667
|
6 |
+
5,510,HyenaDNA_Embeddings.plus.cosine_distance,0.3938869665513264
|
7 |
+
6,780,HyenaDNA_Embeddings.plus.cosine_distance,0.4339341807290525
|
8 |
+
7,540,HyenaDNA_Embeddings.plus.cosine_distance,0.5488873647309861
|
9 |
+
8,460,HyenaDNA_Embeddings.plus.cosine_distance,0.47290485192186515
|
10 |
+
9,440,HyenaDNA_Embeddings.plus.cosine_distance,0.581181129476584
|
11 |
+
10,510,HyenaDNA_Embeddings.plus.cosine_distance,0.4500192233756247
|
12 |
+
11,680,HyenaDNA_Embeddings.plus.cosine_distance,0.45834534794309884
|
13 |
+
12,590,HyenaDNA_Embeddings.plus.cosine_distance,0.3624118229116793
|
14 |
+
13,200,HyenaDNA_Embeddings.plus.cosine_distance,0.5069444444444444
|
15 |
+
14,380,HyenaDNA_Embeddings.plus.cosine_distance,0.43113265620190827
|
16 |
+
15,390,HyenaDNA_Embeddings.plus.cosine_distance,0.57590035795164
|
17 |
+
16,590,HyenaDNA_Embeddings.plus.cosine_distance,0.3767116728909317
|
18 |
+
17,560,HyenaDNA_Embeddings.plus.cosine_distance,0.42632157029478457
|
19 |
+
18,290,HyenaDNA_Embeddings.plus.cosine_distance,0.5000660589245607
|
20 |
+
19,580,HyenaDNA_Embeddings.plus.cosine_distance,0.40414850046241246
|
21 |
+
20,530,HyenaDNA_Embeddings.plus.cosine_distance,0.5580079901902615
|
22 |
+
21,140,HyenaDNA_Embeddings.plus.cosine_distance,0.5272108843537415
|
23 |
+
22,280,HyenaDNA_Embeddings.plus.cosine_distance,0.5055980725623583
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA_Embeddings.plus.euclidean_distance,0.4408777777777778
|
3 |
+
2,900,HyenaDNA_Embeddings.plus.euclidean_distance,0.47731138545953355
|
4 |
+
3,650,HyenaDNA_Embeddings.plus.euclidean_distance,0.47647600262984885
|
5 |
+
4,400,HyenaDNA_Embeddings.plus.euclidean_distance,0.6378472222222222
|
6 |
+
5,510,HyenaDNA_Embeddings.plus.euclidean_distance,0.39190055107010124
|
7 |
+
6,780,HyenaDNA_Embeddings.plus.euclidean_distance,0.4365914237709109
|
8 |
+
7,540,HyenaDNA_Embeddings.plus.euclidean_distance,0.5474775186709343
|
9 |
+
8,460,HyenaDNA_Embeddings.plus.euclidean_distance,0.4703318630539803
|
10 |
+
9,440,HyenaDNA_Embeddings.plus.euclidean_distance,0.5799471992653811
|
11 |
+
10,510,HyenaDNA_Embeddings.plus.euclidean_distance,0.4502968943568713
|
12 |
+
11,680,HyenaDNA_Embeddings.plus.euclidean_distance,0.45597846981930035
|
13 |
+
12,590,HyenaDNA_Embeddings.plus.euclidean_distance,0.35902837626480255
|
14 |
+
13,200,HyenaDNA_Embeddings.plus.euclidean_distance,0.5027777777777778
|
15 |
+
14,380,HyenaDNA_Embeddings.plus.euclidean_distance,0.42705447830101567
|
16 |
+
15,390,HyenaDNA_Embeddings.plus.euclidean_distance,0.5741836511067281
|
17 |
+
16,590,HyenaDNA_Embeddings.plus.euclidean_distance,0.37878642791024286
|
18 |
+
17,560,HyenaDNA_Embeddings.plus.euclidean_distance,0.42350481859410427
|
19 |
+
18,290,HyenaDNA_Embeddings.plus.euclidean_distance,0.49649887699828243
|
20 |
+
19,580,HyenaDNA_Embeddings.plus.euclidean_distance,0.40457788347205714
|
21 |
+
20,530,HyenaDNA_Embeddings.plus.euclidean_distance,0.5572564376409161
|
22 |
+
21,140,HyenaDNA_Embeddings.plus.euclidean_distance,0.528344671201814
|
23 |
+
22,280,HyenaDNA_Embeddings.plus.euclidean_distance,0.5002834467120182
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA_LLR.minus.score,0.5084277777777777
|
3 |
+
2,900,HyenaDNA_LLR.minus.score,0.5272085048010974
|
4 |
+
3,650,HyenaDNA_LLR.minus.score,0.485207100591716
|
5 |
+
4,400,HyenaDNA_LLR.minus.score,0.4651041666666666
|
6 |
+
5,510,HyenaDNA_LLR.minus.score,0.4367764535007903
|
7 |
+
6,780,HyenaDNA_LLR.minus.score,0.4659032800058441
|
8 |
+
7,540,HyenaDNA_LLR.minus.score,0.510783417162018
|
9 |
+
8,460,HyenaDNA_LLR.minus.score,0.42871770636420925
|
10 |
+
9,440,HyenaDNA_LLR.minus.score,0.453885445362718
|
11 |
+
10,510,HyenaDNA_LLR.minus.score,0.4372890768507839
|
12 |
+
11,680,HyenaDNA_LLR.minus.score,0.562043444828912
|
13 |
+
12,590,HyenaDNA_LLR.minus.score,0.515065913370998
|
14 |
+
13,200,HyenaDNA_LLR.minus.score,0.49333333333333335
|
15 |
+
14,380,HyenaDNA_LLR.minus.score,0.5019621421975993
|
16 |
+
15,390,HyenaDNA_LLR.minus.score,0.52326685660019
|
17 |
+
16,590,HyenaDNA_LLR.minus.score,0.4868811644163554
|
18 |
+
17,560,HyenaDNA_LLR.minus.score,0.46977749433106575
|
19 |
+
18,290,HyenaDNA_LLR.minus.score,0.4899590434667723
|
20 |
+
19,580,HyenaDNA_LLR.minus.score,0.5475128814902893
|
21 |
+
20,530,HyenaDNA_LLR.minus.score,0.45787350183932596
|
22 |
+
21,140,HyenaDNA_LLR.minus.score,0.3571428571428572
|
23 |
+
22,280,HyenaDNA_LLR.minus.score,0.5688066893424036
|
complex_traits_matched_9/AUROC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,HyenaDNA_absLLR.plus.score,0.5468999999999999
|
3 |
+
2,900,HyenaDNA_absLLR.plus.score,0.5226748971193416
|
4 |
+
3,650,HyenaDNA_absLLR.plus.score,0.4409335963182117
|
5 |
+
4,400,HyenaDNA_absLLR.plus.score,0.5905902777777777
|
6 |
+
5,510,HyenaDNA_absLLR.plus.score,0.43974539706950316
|
7 |
+
6,780,HyenaDNA_absLLR.plus.score,0.49582694133976185
|
8 |
+
7,540,HyenaDNA_absLLR.plus.score,0.5188042981252857
|
9 |
+
8,460,HyenaDNA_absLLR.plus.score,0.49892354547364004
|
10 |
+
9,440,HyenaDNA_absLLR.plus.score,0.46539256198347106
|
11 |
+
10,510,HyenaDNA_absLLR.plus.score,0.5350719808620616
|
12 |
+
11,680,HyenaDNA_absLLR.plus.score,0.4847054017685506
|
13 |
+
12,590,HyenaDNA_absLLR.plus.score,0.5135816655494909
|
14 |
+
13,200,HyenaDNA_absLLR.plus.score,0.40611111111111114
|
15 |
+
14,380,HyenaDNA_absLLR.plus.score,0.42586180363188675
|
16 |
+
15,390,HyenaDNA_absLLR.plus.score,0.48013003141208266
|
17 |
+
16,590,HyenaDNA_absLLR.plus.score,0.5228861438284018
|
18 |
+
17,560,HyenaDNA_absLLR.plus.score,0.49146116780045357
|
19 |
+
18,290,HyenaDNA_absLLR.plus.score,0.5059453032104637
|
20 |
+
19,580,HyenaDNA_absLLR.plus.score,0.5343506407715684
|
21 |
+
20,530,HyenaDNA_absLLR.plus.score,0.455500177999288
|
22 |
+
21,140,HyenaDNA_absLLR.plus.score,0.528344671201814
|
23 |
+
22,280,HyenaDNA_absLLR.plus.score,0.47718253968253965
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer.LogisticRegression.chrom,0.5825222222222223
|
3 |
+
2,900,NucleotideTransformer.LogisticRegression.chrom,0.552235939643347
|
4 |
+
3,650,NucleotideTransformer.LogisticRegression.chrom,0.5923471400394478
|
5 |
+
4,400,NucleotideTransformer.LogisticRegression.chrom,0.6253472222222222
|
6 |
+
5,510,NucleotideTransformer.LogisticRegression.chrom,0.5883634499551454
|
7 |
+
6,780,NucleotideTransformer.LogisticRegression.chrom,0.5686134852801519
|
8 |
+
7,540,NucleotideTransformer.LogisticRegression.chrom,0.5758649596098155
|
9 |
+
8,460,NucleotideTransformer.LogisticRegression.chrom,0.6062276832598193
|
10 |
+
9,440,NucleotideTransformer.LogisticRegression.chrom,0.5905647382920111
|
11 |
+
10,510,NucleotideTransformer.LogisticRegression.chrom,0.5899440386176258
|
12 |
+
11,680,NucleotideTransformer.LogisticRegression.chrom,0.5875384467512496
|
13 |
+
12,590,NucleotideTransformer.LogisticRegression.chrom,0.6737208337323246
|
14 |
+
13,200,NucleotideTransformer.LogisticRegression.chrom,0.5905555555555555
|
15 |
+
14,380,NucleotideTransformer.LogisticRegression.chrom,0.6480455524776855
|
16 |
+
15,390,NucleotideTransformer.LogisticRegression.chrom,0.5986558550661115
|
17 |
+
16,590,NucleotideTransformer.LogisticRegression.chrom,0.6139678891761626
|
18 |
+
17,560,NucleotideTransformer.LogisticRegression.chrom,0.6058319160997732
|
19 |
+
18,290,NucleotideTransformer.LogisticRegression.chrom,0.5667855727308759
|
20 |
+
19,580,NucleotideTransformer.LogisticRegression.chrom,0.6268001056942792
|
21 |
+
20,530,NucleotideTransformer.LogisticRegression.chrom,0.5993433804042562
|
22 |
+
21,140,NucleotideTransformer.LogisticRegression.chrom,0.7086167800453514
|
23 |
+
22,280,NucleotideTransformer.LogisticRegression.chrom,0.5724206349206349
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,23 @@
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer_Embeddings.minus.inner_product,0.5146444444444445
|
3 |
+
2,900,NucleotideTransformer_Embeddings.minus.inner_product,0.503443072702332
|
4 |
+
3,650,NucleotideTransformer_Embeddings.minus.inner_product,0.5692570677186062
|
5 |
+
4,400,NucleotideTransformer_Embeddings.minus.inner_product,0.5313888888888889
|
6 |
+
5,510,NucleotideTransformer_Embeddings.minus.inner_product,0.5182622068435218
|
7 |
+
6,780,NucleotideTransformer_Embeddings.minus.inner_product,0.5481225801738622
|
8 |
+
7,540,NucleotideTransformer_Embeddings.minus.inner_product,0.5302545343697607
|
9 |
+
8,460,NucleotideTransformer_Embeddings.minus.inner_product,0.6135790800252048
|
10 |
+
9,440,NucleotideTransformer_Embeddings.minus.inner_product,0.460342056932966
|
11 |
+
10,510,NucleotideTransformer_Embeddings.minus.inner_product,0.47157076338160536
|
12 |
+
11,680,NucleotideTransformer_Embeddings.minus.inner_product,0.5615148019992311
|
13 |
+
12,590,NucleotideTransformer_Embeddings.minus.inner_product,0.6012001659804016
|
14 |
+
13,200,NucleotideTransformer_Embeddings.minus.inner_product,0.5758333333333333
|
15 |
+
14,380,NucleotideTransformer_Embeddings.minus.inner_product,0.5950292397660818
|
16 |
+
15,390,NucleotideTransformer_Embeddings.minus.inner_product,0.5350281247717145
|
17 |
+
16,590,NucleotideTransformer_Embeddings.minus.inner_product,0.6303105748667368
|
18 |
+
17,560,NucleotideTransformer_Embeddings.minus.inner_product,0.6348497732426304
|
19 |
+
18,290,NucleotideTransformer_Embeddings.minus.inner_product,0.6020610384462941
|
20 |
+
19,580,NucleotideTransformer_Embeddings.minus.inner_product,0.5920531113753469
|
21 |
+
20,530,NucleotideTransformer_Embeddings.minus.inner_product,0.5554368893635537
|
22 |
+
21,140,NucleotideTransformer_Embeddings.minus.inner_product,0.48072562358276644
|
23 |
+
22,280,NucleotideTransformer_Embeddings.minus.inner_product,0.6024659863945578
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
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|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5150888888888889
|
3 |
+
2,900,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5565775034293553
|
4 |
+
3,650,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5879421433267586
|
5 |
+
4,400,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5296180555555555
|
6 |
+
5,510,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5234097996497074
|
7 |
+
6,780,NucleotideTransformer_Embeddings.plus.cosine_distance,0.48444006136313833
|
8 |
+
7,540,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5739788142051516
|
9 |
+
8,460,NucleotideTransformer_Embeddings.plus.cosine_distance,0.6025519848771267
|
10 |
+
9,440,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5633321854912764
|
11 |
+
10,510,NucleotideTransformer_Embeddings.plus.cosine_distance,0.6194412405485069
|
12 |
+
11,680,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5767012687427913
|
13 |
+
12,590,NucleotideTransformer_Embeddings.plus.cosine_distance,0.53340355581091
|
14 |
+
13,200,NucleotideTransformer_Embeddings.plus.cosine_distance,0.4708333333333334
|
15 |
+
14,380,NucleotideTransformer_Embeddings.plus.cosine_distance,0.458602646968298
|
16 |
+
15,390,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5957703265395573
|
17 |
+
16,590,NucleotideTransformer_Embeddings.plus.cosine_distance,0.45143477289412365
|
18 |
+
17,560,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5445365646258503
|
19 |
+
18,290,NucleotideTransformer_Embeddings.plus.cosine_distance,0.6037785704848725
|
20 |
+
19,580,NucleotideTransformer_Embeddings.plus.cosine_distance,0.4940051525961157
|
21 |
+
20,530,NucleotideTransformer_Embeddings.plus.cosine_distance,0.601894703532297
|
22 |
+
21,140,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5425170068027211
|
23 |
+
22,280,NucleotideTransformer_Embeddings.plus.cosine_distance,0.5069444444444444
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5144444444444445
|
3 |
+
2,900,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5572702331961591
|
4 |
+
3,650,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5831689677843523
|
5 |
+
4,400,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5267361111111111
|
6 |
+
5,510,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5198855141185015
|
7 |
+
6,780,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.4820293666447513
|
8 |
+
7,540,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5685490016765736
|
9 |
+
8,460,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5955681579500104
|
10 |
+
9,440,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5623852157943067
|
11 |
+
10,510,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.618010167029775
|
12 |
+
11,680,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.573481353325644
|
13 |
+
12,590,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.526189792205305
|
14 |
+
13,200,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.4691666666666666
|
15 |
+
14,380,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.45752539242843954
|
16 |
+
15,390,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.592300387172182
|
17 |
+
16,590,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.4469660697756072
|
18 |
+
17,560,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5383007369614512
|
19 |
+
18,290,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5992865636147443
|
20 |
+
19,580,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.49019024970273484
|
21 |
+
20,530,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5987104940469127
|
22 |
+
21,140,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5436507936507937
|
23 |
+
22,280,NucleotideTransformer_Embeddings.plus.euclidean_distance,0.5032596371882087
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer_LLR.minus.score,0.48613333333333325
|
3 |
+
2,900,NucleotideTransformer_LLR.minus.score,0.5210288065843621
|
4 |
+
3,650,NucleotideTransformer_LLR.minus.score,0.4876002629848784
|
5 |
+
4,400,NucleotideTransformer_LLR.minus.score,0.4552777777777778
|
6 |
+
5,510,NucleotideTransformer_LLR.minus.score,0.5018582596437268
|
7 |
+
6,780,NucleotideTransformer_LLR.minus.score,0.517203594126671
|
8 |
+
7,540,NucleotideTransformer_LLR.minus.score,0.3922039323273891
|
9 |
+
8,460,NucleotideTransformer_LLR.minus.score,0.38384793110691035
|
10 |
+
9,440,NucleotideTransformer_LLR.minus.score,0.45867768595041325
|
11 |
+
10,510,NucleotideTransformer_LLR.minus.score,0.46456491093169294
|
12 |
+
11,680,NucleotideTransformer_LLR.minus.score,0.5165801614763552
|
13 |
+
12,590,NucleotideTransformer_LLR.minus.score,0.5369465989977337
|
14 |
+
13,200,NucleotideTransformer_LLR.minus.score,0.41
|
15 |
+
14,380,NucleotideTransformer_LLR.minus.score,0.481763619575254
|
16 |
+
15,390,NucleotideTransformer_LLR.minus.score,0.5107020235225364
|
17 |
+
16,590,NucleotideTransformer_LLR.minus.score,0.4434230265887835
|
18 |
+
17,560,NucleotideTransformer_LLR.minus.score,0.49447278911564624
|
19 |
+
18,290,NucleotideTransformer_LLR.minus.score,0.41075439291848326
|
20 |
+
19,580,NucleotideTransformer_LLR.minus.score,0.48705245078610115
|
21 |
+
20,530,NucleotideTransformer_LLR.minus.score,0.508089078754796
|
22 |
+
21,140,NucleotideTransformer_LLR.minus.score,0.5487528344671202
|
23 |
+
22,280,NucleotideTransformer_LLR.minus.score,0.5625000000000001
|
complex_traits_matched_9/AUROC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,NucleotideTransformer_absLLR.plus.score,0.46863333333333335
|
3 |
+
2,900,NucleotideTransformer_absLLR.plus.score,0.46794238683127576
|
4 |
+
3,650,NucleotideTransformer_absLLR.plus.score,0.46608809993425376
|
5 |
+
4,400,NucleotideTransformer_absLLR.plus.score,0.4857638888888889
|
6 |
+
5,510,NucleotideTransformer_absLLR.plus.score,0.42218804733222265
|
7 |
+
6,780,NucleotideTransformer_absLLR.plus.score,0.44185112133830085
|
8 |
+
7,540,NucleotideTransformer_absLLR.plus.score,0.509564090839811
|
9 |
+
8,460,NucleotideTransformer_absLLR.plus.score,0.44770006301197224
|
10 |
+
9,440,NucleotideTransformer_absLLR.plus.score,0.42412764003673104
|
11 |
+
10,510,NucleotideTransformer_absLLR.plus.score,0.45520953479430987
|
12 |
+
11,680,NucleotideTransformer_absLLR.plus.score,0.47419261822376013
|
13 |
+
12,590,NucleotideTransformer_absLLR.plus.score,0.4905678444891315
|
14 |
+
13,200,NucleotideTransformer_absLLR.plus.score,0.45333333333333337
|
15 |
+
14,380,NucleotideTransformer_absLLR.plus.score,0.5065404739919974
|
16 |
+
15,390,NucleotideTransformer_absLLR.plus.score,0.3558331507049456
|
17 |
+
16,590,NucleotideTransformer_absLLR.plus.score,0.4865460116824667
|
18 |
+
17,560,NucleotideTransformer_absLLR.plus.score,0.5065901360544218
|
19 |
+
18,290,NucleotideTransformer_absLLR.plus.score,0.5402298850574713
|
20 |
+
19,580,NucleotideTransformer_absLLR.plus.score,0.5177037917822698
|
21 |
+
20,530,NucleotideTransformer_absLLR.plus.score,0.4270400696174993
|
22 |
+
21,140,NucleotideTransformer_absLLR.plus.score,0.42176870748299317
|
23 |
+
22,280,NucleotideTransformer_absLLR.plus.score,0.528061224489796
|
complex_traits_matched_9/AUROC_by_chrom/all/Sei.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Sei.LogisticRegression.chrom,0.5585444444444445
|
3 |
+
2,900,Sei.LogisticRegression.chrom,0.6113305898491084
|
4 |
+
3,650,Sei.LogisticRegression.chrom,0.5719658119658121
|
5 |
+
4,400,Sei.LogisticRegression.chrom,0.5467361111111111
|
6 |
+
5,510,Sei.LogisticRegression.chrom,0.5606817890554914
|
7 |
+
6,780,Sei.LogisticRegression.chrom,0.6078420629702681
|
8 |
+
7,540,Sei.LogisticRegression.chrom,0.6325255296448713
|
9 |
+
8,460,Sei.LogisticRegression.chrom,0.6168346985927327
|
10 |
+
9,440,Sei.LogisticRegression.chrom,0.6485881542699725
|
11 |
+
10,510,Sei.LogisticRegression.chrom,0.6483831005168953
|
12 |
+
11,680,Sei.LogisticRegression.chrom,0.5953479430988081
|
13 |
+
12,590,Sei.LogisticRegression.chrom,0.6403651568833988
|
14 |
+
13,200,Sei.LogisticRegression.chrom,0.7025
|
15 |
+
14,380,Sei.LogisticRegression.chrom,0.6288088642659279
|
16 |
+
15,390,Sei.LogisticRegression.chrom,0.6036233472130909
|
17 |
+
16,590,Sei.LogisticRegression.chrom,0.615340419419707
|
18 |
+
17,560,Sei.LogisticRegression.chrom,0.5260416666666667
|
19 |
+
18,290,Sei.LogisticRegression.chrom,0.6739331483683445
|
20 |
+
19,580,Sei.LogisticRegression.chrom,0.5643083630598493
|
21 |
+
20,530,Sei.LogisticRegression.chrom,0.5269570032830979
|
22 |
+
21,140,Sei.LogisticRegression.chrom,0.6354875283446713
|
23 |
+
22,280,Sei.LogisticRegression.chrom,0.6067176870748299
|
complex_traits_matched_9/AUROC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
ADDED
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
chrom,n,Model,AUROC
|
2 |
+
1,1000,Sei.plus.seqclass_max_absdiff,0.6051555555555556
|
3 |
+
2,900,Sei.plus.seqclass_max_absdiff,0.5945816186556927
|
4 |
+
3,650,Sei.plus.seqclass_max_absdiff,0.5818540433925048
|
5 |
+
4,400,Sei.plus.seqclass_max_absdiff,0.5626388888888889
|
6 |
+
5,510,Sei.plus.seqclass_max_absdiff,0.6105344098423684
|
7 |
+
6,780,Sei.plus.seqclass_max_absdiff,0.6040068668273796
|
8 |
+
7,540,Sei.plus.seqclass_max_absdiff,0.6644566377076665
|
9 |
+
8,460,Sei.plus.seqclass_max_absdiff,0.6198277672757824
|
10 |
+
9,440,Sei.plus.seqclass_max_absdiff,0.6524908172635445
|
11 |
+
10,510,Sei.plus.seqclass_max_absdiff,0.6050664274424367
|
12 |
+
11,680,Sei.plus.seqclass_max_absdiff,0.6418685121107266
|
13 |
+
12,590,Sei.plus.seqclass_max_absdiff,0.6352580676050943
|
14 |
+
13,200,Sei.plus.seqclass_max_absdiff,0.6494444444444445
|
15 |
+
14,380,Sei.plus.seqclass_max_absdiff,0.6423514927670052
|
16 |
+
15,390,Sei.plus.seqclass_max_absdiff,0.621082621082621
|
17 |
+
16,590,Sei.plus.seqclass_max_absdiff,0.6142551629480673
|
18 |
+
17,560,Sei.plus.seqclass_max_absdiff,0.5228528911564627
|
19 |
+
18,290,Sei.plus.seqclass_max_absdiff,0.6958647113224996
|
20 |
+
19,580,Sei.plus.seqclass_max_absdiff,0.5769916765755053
|
21 |
+
20,530,Sei.plus.seqclass_max_absdiff,0.5483564732407737
|
22 |
+
21,140,Sei.plus.seqclass_max_absdiff,0.604875283446712
|
23 |
+
22,280,Sei.plus.seqclass_max_absdiff,0.6461167800453514
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
Borzoi.LogisticRegression.chrom,AUROC,0.6861624983961824,0.009593431157750161
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
Borzoi_L2_L2.plus.all,AUROC,0.645880928239982,0.008231606575369437
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD+Borzoi.LogisticRegression.chrom,AUROC,0.7226995279168825,0.010224592694300134
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD+GPN-MSA.LogisticRegression.chrom,AUROC,0.6976000941721767,0.010087737626696949
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.LogisticRegression.chrom,AUROC,0.6958667741245484,0.009657502013736632
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.plus.RawScore,AUROC,0.6155839016156137,0.009337989689475558
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
Caduceus.LogisticRegression.chrom,AUROC,0.5829148475724354,0.010898684546777792
|
complex_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
Caduceus_Embeddings.minus.inner_product,AUROC,0.49232748217222705,0.014326535148337637
|