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songlab
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TraitGym

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Tags:
dna
variant-effect-prediction
biology
genomics
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  1. complex_traits_all/AUPRC/maf_match/CADD.plus.RawScore.csv +2 -0
  2. complex_traits_all/AUPRC/maf_match/GPN-MSA_absLLR.plus.score.csv +2 -0
  3. complex_traits_all/AUPRC/maf_match_AND_no_cadd_overlap/CADD.plus.RawScore.csv +2 -0
  4. complex_traits_all/AUPRC/maf_match_AND_no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv +2 -0
  5. complex_traits_all/features/CADD.parquet +3 -0
  6. complex_traits_all/features/CADDv1.7.RawScore.parquet +3 -0
  7. complex_traits_all/features/GPN-MSA_LLR.parquet +3 -0
  8. complex_traits_all/features/GPN-MSA_absLLR.parquet +3 -0
  9. complex_traits_all/preds/maf_match/CADD.plus.RawScore.parquet +3 -0
  10. complex_traits_all/preds/maf_match/GPN-MSA_absLLR.plus.score.parquet +3 -0
  11. complex_traits_all/preds/maf_match_AND_no_cadd_overlap/CADD.plus.RawScore.parquet +3 -0
  12. complex_traits_all/preds/maf_match_AND_no_cadd_overlap/GPN-MSA_absLLR.plus.score.parquet +3 -0
  13. complex_traits_all/subset/all.parquet +3 -0
  14. complex_traits_all/subset/maf_0.00_0.05.parquet +3 -0
  15. complex_traits_all/subset/maf_0.05_0.50.parquet +3 -0
  16. complex_traits_all/subset/maf_0.0_0.01.parquet +3 -0
  17. complex_traits_all/subset/maf_0.0_0.1.parquet +3 -0
  18. complex_traits_all/subset/maf_0.1_0.2.parquet +3 -0
  19. complex_traits_all/subset/maf_0.2_0.3.parquet +3 -0
  20. complex_traits_all/subset/maf_0.3_0.4.parquet +3 -0
  21. complex_traits_all/subset/maf_0.4_0.5.parquet +3 -0
  22. complex_traits_all/subset/maf_0_05_0.50.parquet +3 -0
  23. complex_traits_all/subset/maf_match.parquet +3 -0
  24. complex_traits_all/subset/maf_match_AND_no_cadd_overlap.parquet +3 -0
  25. complex_traits_all/subset/no_cadd_overlap.parquet +3 -0
  26. complex_traits_all/test.parquet +3 -0
  27. complex_traits_matched_9/features/Borzoi_L2.parquet +3 -0
  28. complex_traits_matched_9/features/Caduceus_Embeddings.parquet +3 -0
  29. complex_traits_matched_9/features/Enformer_L2.parquet +3 -0
  30. complex_traits_matched_9/features/GPN-MSA_Embeddings.parquet +3 -0
  31. complex_traits_matched_9/features/GPN_final_Embeddings.parquet +3 -0
  32. complex_traits_matched_9/features/GPN_final_InnerProducts.parquet +3 -0
  33. complex_traits_matched_9/features/HyenaDNA_Embeddings.parquet +3 -0
  34. complex_traits_matched_9/features/NucleotideTransformer_Embeddings.parquet +3 -0
  35. complex_traits_matched_9/features/NucleotideTransformer_InnerProducts.parquet +3 -0
  36. complex_traits_matched_9/preds/BMI/Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  37. complex_traits_matched_9/preds/BMI/Borzoi_L2_L2.plus.all.parquet +3 -0
  38. complex_traits_matched_9/preds/BMI/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  39. complex_traits_matched_9/preds/BMI/GPN-MSA.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  40. complex_traits_matched_9/preds/DVT/CADD.LogisticRegression.chrom.subset_from_all.parquet +3 -0
  41. complex_traits_matched_9/subset/3_prime_UTR_variant.parquet +3 -0
  42. complex_traits_matched_9/subset/5_prime_UTR_variant.parquet +3 -0
  43. complex_traits_matched_9/subset/AG.parquet +3 -0
  44. complex_traits_matched_9/subset/ALP.parquet +3 -0
  45. complex_traits_matched_9/subset/Alb.parquet +3 -0
  46. complex_traits_matched_9/subset/BMI.parquet +3 -0
  47. complex_traits_matched_9/subset/Balding_Type4.parquet +3 -0
  48. complex_traits_matched_9/subset/Ca.parquet +3 -0
  49. complex_traits_matched_9/subset/DVT.parquet +3 -0
  50. complex_traits_matched_9/subset/FEV1FVC.parquet +3 -0
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