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- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_LLR.minus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/nonexonic_AND_proximal/GPN_final_Embeddings.plus.euclidean_distance.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/Borzoi_L2_L2.plus.all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD.plus.RawScore.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv +2 -0
- complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv +2 -0
- complex_traits_matched_9/preds/ALP/Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
- complex_traits_matched_9/preds/ALP/Borzoi_L2_L2.plus.all.parquet +3 -0
- complex_traits_matched_9/preds/ALP/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.parquet +3 -0
- complex_traits_matched_9/preds/ALP/CADD.LogisticRegression.chrom.subset_from_all.parquet +3 -0
- complex_traits_matched_9/preds/ALP/CADD.plus.RawScore.parquet +3 -0
- complex_traits_matched_9/preds/ALP/GPN-MSA.LogisticRegression.chrom.subset_from_all.parquet +3 -0
- complex_traits_matched_9/preds/ALP/GPN-MSA_absLLR.plus.score.parquet +3 -0
- complex_traits_matched_9/preds/Alb/GPN-MSA_absLLR.plus.score.parquet +3 -0
- complex_traits_matched_9/preds/BMI/CADD.LogisticRegression.chrom.subset_from_all.parquet +3 -0
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.29559132465316407,0.013852659708719055
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
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model,metric,score,se
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Borzoi_L2_L2.plus.all,AUPRC,0.23275268181786785,0.009559748217128688
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.2796943294208497,0.01280867586372289
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/CADD.plus.RawScore.csv
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model,metric,score,se
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CADD.plus.RawScore,AUPRC,0.24294787829800676,0.009792412496402404
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Caduceus.LogisticRegression.chrom.subset_from_all,AUPRC,0.15256012148813888,0.007166846213151921
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
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model,metric,score,se
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Caduceus_Embeddings.minus.inner_product,AUPRC,0.11765008078757727,0.005824920378032796
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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Caduceus_Embeddings.plus.euclidean_distance,AUPRC,0.1159462943896983,0.004035722821300837
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Enformer.LogisticRegression.chrom.subset_from_all,AUPRC,0.2988963648970225,0.010442049865644143
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Enformer_L2_L2.plus.all.csv
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model,metric,score,se
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Enformer_L2_L2.plus.all,AUPRC,0.2431331349040763,0.008129454744071037
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.26679605772260073,0.011951241923386742
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
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model,metric,score,se
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GPN-MSA_LLR.minus.score,AUPRC,0.20396005418220764,0.009585673441497992
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
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model,metric,score,se
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GPN-MSA_absLLR.plus.score,AUPRC,0.2190269301338905,0.009248488256516512
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.18512034146380163,0.0063586451771733745
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.1254714820363969,0.003866258765816274
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_LLR.minus.score.csv
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model,metric,score,se
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GPN_final_LLR.minus.score,AUPRC,0.11146838545985943,0.0035404534983329754
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/GPN_final_absLLR.plus.score.csv
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model,metric,score,se
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GPN_final_absLLR.plus.score,AUPRC,0.11175519137916468,0.004791547240357025
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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HyenaDNA.LogisticRegression.chrom.subset_from_all,AUPRC,0.1338225825536506,0.007849069217830303
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
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model,metric,score,se
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HyenaDNA_Embeddings.minus.inner_product,AUPRC,0.11780730202677744,0.00361350415273021
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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NucleotideTransformer.LogisticRegression.chrom.subset_from_all,AUPRC,0.1671252991257899,0.005714415997469197
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
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model,metric,score,se
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NucleotideTransformer_Embeddings.minus.inner_product,AUPRC,0.13962884776407092,0.0060074873985385925
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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NucleotideTransformer_Embeddings.plus.euclidean_distance,AUPRC,0.12080908016483949,0.005304937236808229
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Sei.LogisticRegression.chrom.subset_from_all,AUPRC,0.18442580348100793,0.008897472647174097
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
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model,metric,score,se
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Sei.plus.seqclass_max_absdiff,AUPRC,0.19354772197316122,0.00891518726937263
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.2803536868893724,0.013136088878313855
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
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model,metric,score,se
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Borzoi_L2_L2.plus.all,AUPRC,0.213625677333782,0.00944146000892977
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.3516297482188318,0.014942376462794305
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.2831230622299395,0.012851154100654868
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/CADD.plus.RawScore.csv
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model,metric,score,se
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CADD.plus.RawScore,AUPRC,0.24469830737537437,0.011060044331904755
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.2722273688594766,0.012976277232443165
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
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model,metric,score,se
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GPN-MSA_absLLR.plus.score,AUPRC,0.2162495437957213,0.01013856327764111
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.28869709838611923,0.04480409942237179
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.16506062312933797,0.01620135908874977
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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GPN_final.LogisticRegression.chrom.subset_from_all,AUPRC,0.24839734867893706,0.019424705135454957
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/nonexonic_AND_proximal/GPN_final_Embeddings.plus.euclidean_distance.csv
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model,metric,score,se
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GPN_final_Embeddings.plus.euclidean_distance,AUPRC,0.23974740911452133,0.03130116140914131
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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model,metric,score,se
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Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.5242708921478162,0.03860937825107215
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
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model,metric,score,se
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Borzoi_L2_L2.plus.all,AUPRC,0.5239749747926583,0.03227462408638658
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complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
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2 |
+
CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all,AUPRC,0.5231145637864545,0.03944733796857348
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.LogisticRegression.chrom.subset_from_all,AUPRC,0.39690662337105986,0.04578058419783016
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/CADD.plus.RawScore.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
CADD.plus.RawScore,AUPRC,0.3814806144671539,0.04163863373376098
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
GPN-MSA.LogisticRegression.chrom.subset_from_all,AUPRC,0.33736864467377436,0.036741260085270226
|
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/yes_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
ADDED
@@ -0,0 +1,2 @@
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|
|
|
|
|
|
1 |
+
model,metric,score,se
|
2 |
+
GPN-MSA_absLLR.plus.score,AUPRC,0.39866941182867766,0.04516652193236569
|
complex_traits_matched_9/preds/ALP/Borzoi.LogisticRegression.chrom.subset_from_all.parquet
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complex_traits_matched_9/preds/ALP/Borzoi_L2_L2.plus.all.parquet
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complex_traits_matched_9/preds/ALP/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.parquet
ADDED
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complex_traits_matched_9/preds/ALP/CADD.LogisticRegression.chrom.subset_from_all.parquet
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complex_traits_matched_9/preds/ALP/CADD.plus.RawScore.parquet
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complex_traits_matched_9/preds/ALP/GPN-MSA.LogisticRegression.chrom.subset_from_all.parquet
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complex_traits_matched_9/preds/ALP/GPN-MSA_absLLR.plus.score.parquet
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complex_traits_matched_9/preds/Alb/GPN-MSA_absLLR.plus.score.parquet
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complex_traits_matched_9/preds/BMI/CADD.LogisticRegression.chrom.subset_from_all.parquet
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