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David Wen

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davidjwen

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davidjwen's activity

New activity in ctheodoris/Geneformer about 2 months ago

How to output gene embeddings after single gene perturbation, similar to Fig5a/b?

#256 opened 10 months ago by

In silico perturbation error with combos

#331 opened 4 months ago by

New activity in ctheodoris/Geneformer 2 months ago

fix cell state gene embeddings bug

#345 opened 2 months ago by

New activity in ctheodoris/Geneformer 5 months ago

Upload in_silico_perturber_stats.py

#313 opened 5 months ago by

Fix bug in selecting a gene with "aggregate_data" option

#312 opened 5 months ago by

Fix bug in selecting a gene with "aggregate_data" option

#311 opened 5 months ago by

Fix bug in selecting a gene with "aggregate_data" option

#310 opened 5 months ago by

New activity in ctheodoris/Geneformer 6 months ago

Upload in_silico_perturber.py

#292 opened 6 months ago by

New activity in ctheodoris/Geneformer 11 months ago

gf_v1: filled in isp single gene code

#237 opened 11 months ago by

Fixed bugs related to overexpressing genes

#229 opened 11 months ago by

New activity in ctheodoris/Geneformer 12 months ago

Size of tensor a does not match size of tensor b in InSilicoPerturbation

#184 opened 12 months ago by

Fixed bug with the double removing of indices when cell_states_to_model is false

#188 opened 12 months ago by

in_silico_perturber error: 'original_max_len' referenced before assignment

#182 opened 12 months ago by

Upload in_silico_perturber.py

#187 opened 12 months ago by

Added feature to perturb a set of indices to help with debugging and with very large runtimes

#175 opened 12 months ago by

Fixed bug in gen_attention_mask with len > max_len

#158 opened 12 months ago by

Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model

#146 opened 12 months ago by

New activity in ctheodoris/Geneformer about 1 year ago

Upload gene_name_id_dict.pkl

#14 opened about 1 year ago by

Fixes to stats and adding gene dict attempt number 2

#13 opened about 1 year ago by

Bug fixes in stats and added gene dict

#12 opened about 1 year ago by

Added comparison to null distribution for stats

#9 opened about 1 year ago by

New activity in ctheodoris/Geneformer over 1 year ago

Fix bug with metadata when processing multiple .loom files

#3 opened over 1 year ago by