environment.yml

name: medversa
channels:
  - pytorch
  - nvidia
  - conda-forge
  - anaconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - abseil-cpp=20211102.0=h27087fc_1
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - arrow-cpp=11.0.0=py39h613000e_0
  - asttokens=2.2.1=pyhd8ed1ab_0
  - async-timeout=4.0.2=pyhd8ed1ab_0
  - atk-1.0=2.36.0=ha1a6a79_0
  - aws-c-common=0.4.57=he6710b0_1
  - aws-c-event-stream=0.1.6=h2531618_5
  - aws-checksums=0.1.9=he6710b0_0
  - aws-sdk-cpp=1.8.185=hce553d0_0
  - blas=1.0=mkl
  - boost-cpp=1.70.0=ha2d47e9_1
  - bottleneck=1.3.5=py39h7deecbd_0
  - brotlipy=0.7.0=py39h27cfd23_1003
  - bzip2=1.0.8=h7b6447c_0
  - c-ares=1.18.1=h7f8727e_0
  - ca-certificates=2023.12.12=h06a4308_0
  - cairo=1.16.0=hb05425b_5
  - certifi=2023.11.17=py39h06a4308_0
  - cffi=1.15.1=py39h5eee18b_3
  - colorama=0.4.6=pyhd8ed1ab_0
  - cryptography=41.0.2=py39h774aba0_0
  - cuda-cudart=11.7.99=0
  - cuda-cupti=11.7.101=0
  - cuda-libraries=11.7.1=0
  - cuda-nvrtc=11.7.99=0
  - cuda-nvtx=11.7.91=0
  - cuda-runtime=11.7.1=0
  - cudatoolkit=11.7.0=hd8887f6_10
  - curl=7.87.0=h5eee18b_0
  - dataclasses=0.8=pyhc8e2a94_3
  - datasets=2.14.3=pyhd8ed1ab_0
  - dill=0.3.7=pyhd8ed1ab_0
  - executing=1.2.0=pyhd8ed1ab_0
  - expat=2.4.9=h6a678d5_0
  - ffmpeg=4.3=hf484d3e_0
  - filelock=3.9.0=py39h06a4308_0
  - flit-core=3.6.0=pyhd3eb1b0_0
  - font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
  - font-ttf-inconsolata=2.001=hcb22688_0
  - font-ttf-source-code-pro=2.030=hd3eb1b0_0
  - font-ttf-ubuntu=0.83=h8b1ccd4_0
  - fontconfig=2.14.1=h52c9d5c_1
  - fonts-anaconda=1=h8fa9717_0
  - fonts-conda-ecosystem=1=hd3eb1b0_0
  - freetype=2.12.1=h4a9f257_0
  - fribidi=1.0.10=h7b6447c_0
  - frozenlist=1.3.3=py39h5eee18b_0
  - gdbm=1.18=hd4cb3f1_4
  - gdk-pixbuf=2.42.10=h5eee18b_0
  - gettext=0.21.0=hf68c758_0
  - gflags=2.2.2=he1b5a44_1004
  - giflib=5.2.1=h5eee18b_3
  - git=2.34.1=pl5262hc120c5b_0
  - glib=2.69.1=he621ea3_2
  - glog=0.5.0=h48cff8f_0
  - gmp=6.2.1=h295c915_3
  - gmpy2=2.1.2=py39heeb90bb_0
  - gnutls=3.6.15=he1e5248_0
  - gobject-introspection=1.72.0=py39hbb6d50b_2
  - graphite2=1.3.14=h295c915_1
  - graphviz=2.50.0=h1b29801_1
  - grpc-cpp=1.46.1=h33aed49_1
  - gtk2=2.24.33=h73c1081_2
  - gts=0.7.6=hb67d8dd_3
  - harfbuzz=4.3.0=hf52aaf7_1
  - huggingface_hub=0.16.4=pyhd8ed1ab_0
  - icu=58.2=he6710b0_3
  - idna=3.4=py39h06a4308_0
  - importlib_metadata=6.8.0=hd8ed1ab_0
  - intel-openmp=2023.1.0=hdb19cb5_46305
  - jinja2=3.1.2=py39h06a4308_0
  - jpeg=9e=h5eee18b_1
  - krb5=1.19.4=h568e23c_0
  - lame=3.100=h7b6447c_0
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.38=h1181459_1
  - lerc=3.0=h295c915_0
  - libbrotlicommon=1.0.9=h166bdaf_7
  - libbrotlidec=1.0.9=h166bdaf_7
  - libbrotlienc=1.0.9=h166bdaf_7
  - libcublas=11.10.3.66=0
  - libcufft=10.7.2.124=h4fbf590_0
  - libcufile=1.7.1.12=0
  - libcurand=10.3.3.129=0
  - libcurl=7.87.0=h91b91d3_0
  - libcusolver=11.4.0.1=0
  - libcusparse=11.7.4.91=0
  - libdeflate=1.17=h5eee18b_0
  - libedit=3.1.20221030=h5eee18b_0
  - libev=4.33=h7f8727e_1
  - libevent=2.1.10=h9b69904_4
  - libffi=3.4.2=h6a678d5_6
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=11.2.0=h1234567_1
  - libgd=2.3.3=h6a678d5_3
  - libgomp=11.2.0=h1234567_1
  - libiconv=1.16=h7f8727e_2
  - libidn2=2.3.4=h5eee18b_0
  - libnghttp2=1.46.0=hce63b2e_0
  - libnpp=11.7.4.75=0
  - libnvjpeg=11.8.0.2=0
  - libpng=1.6.39=h5eee18b_0
  - libprotobuf=3.20.3=he621ea3_0
  - librsvg=2.54.4=h36cc946_2
  - libssh2=1.10.0=h8f2d780_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libtasn1=4.19.0=h5eee18b_0
  - libthrift=0.15.0=he6d91bd_0
  - libtiff=4.5.0=h6a678d5_2
  - libtool=2.4.6=h6a678d5_1009
  - libunistring=0.9.10=h27cfd23_0
  - libuuid=1.41.5=h5eee18b_0
  - libwebp=1.2.4=h11a3e52_1
  - libwebp-base=1.2.4=h5eee18b_1
  - libxcb=1.15=h7f8727e_0
  - libxml2=2.9.14=h74e7548_0
  - lz4-c=1.9.4=h6a678d5_0
  - mkl=2023.1.0=h6d00ec8_46342
  - mkl-service=2.4.0=py39h5eee18b_1
  - mkl_fft=1.3.6=py39h417a72b_1
  - mkl_random=1.2.2=py39h417a72b_1
  - mpc=1.1.0=h10f8cd9_1
  - mpfr=4.0.2=hb69a4c5_1
  - mpmath=1.3.0=py39h06a4308_0
  - ncurses=6.4=h6a678d5_0
  - nettle=3.7.3=hbbd107a_1
  - networkx=3.1=py39h06a4308_0
  - ninja-base=1.10.2=hd09550d_5
  - numexpr=2.8.4=py39hc78ab66_1
  - numpy-base=1.25.0=py39hb5e798b_0
  - openh264=2.1.1=h4ff587b_0
  - openjpeg=2.4.0=h3ad879b_0
  - openssl=1.1.1w=h7f8727e_0
  - orc=1.7.4=hb3bc3d3_1
  - pango=1.50.7=h05da053_0
  - pcre=8.45=h295c915_0
  - pcre2=10.37=he7ceb23_1
  - perl=5.34.0=h5eee18b_2
  - pip=23.0.1=py39h06a4308_0
  - pixman=0.40.0=h7f8727e_1
  - poppler=0.81.0=h01f5e8b_2
  - poppler-data=0.4.11=h06a4308_1
  - pycparser=2.21=pyhd3eb1b0_0
  - pyopenssl=23.2.0=py39h06a4308_0
  - pysocks=1.7.1=py39h06a4308_0
  - python=3.9.16=h7a1cb2a_2
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-devtools=0.11.0=pyhd8ed1ab_0
  - python-graphviz=0.20.1=py39h06a4308_0
  - python-xxhash=2.0.2=py39h5eee18b_1
  - python_abi=3.9=2_cp39
  - pytorch=2.0.1=py3.9_cuda11.7_cudnn8.5.0_0
  - pytorch-cuda=11.7=h778d358_5
  - pytorch-mutex=1.0=cuda
  - pytz=2023.3=pyhd8ed1ab_0
  - pyyaml=6.0=py39hb9d737c_4
  - re2=2022.04.01=h27087fc_0
  - readline=8.2=h5eee18b_0
  - sacremoses=0.0.53=pyhd8ed1ab_0
  - setuptools=66.0.0=py39h06a4308_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.1.9=h295c915_0
  - sqlite=3.41.2=h5eee18b_0
  - sympy=1.11.1=py39h06a4308_0
  - tbb=2021.8.0=hdb19cb5_0
  - tk=8.6.12=h1ccaba5_0
  - tmux=3.2a=h385fc29_0
  - tokenizers=0.13.2=py39he7d60b5_1
  - torchtriton=2.0.0=py39
  - transformers=4.28.1=pyhd8ed1ab_0
  - typing_extensions=4.4.0=py39h06a4308_0
  - utf8proc=2.6.1=h27cfd23_0
  - wheel=0.38.4=py39h06a4308_0
  - xz=5.2.10=h5eee18b_1
  - yaml=0.2.5=h7f98852_2
  - zlib=1.2.13=h5eee18b_0
  - zstd=1.5.5=hc292b87_0
  - pip:
      - absl-py==2.0.0
      - accelerate==0.16.0
      - aiofiles==23.1.0
      - aiohttp==3.8.4
      - albumentations==1.3.1
      - altair==4.2.2
      - antlr4-python3-runtime==4.9.3
      - anyio==3.6.2
      - appdirs==1.4.4
      - apptools==5.2.1
      - argon2-cffi==21.3.0
      - argon2-cffi-bindings==21.2.0
      - argparse==1.4.0
      - arrow==1.2.3
      - attrs==22.2.0
      - backcall==0.2.0
      - batchgenerators==0.25
      - beautifulsoup4==4.12.2
      - bitsandbytes==0.37.0
      - bitsandbytes-cuda117==0.26.0.post2
      - bleach==6.0.0
      - blis==0.7.9
      - braceexpand==0.1.7
      - brotli==1.1.0
      - cachetools==5.3.1
      - catalogue==2.0.8
      - cchardet==2.1.7
      - chardet==5.1.0
      - charset-normalizer==3.1.0
      - click==8.1.3
      - cmake==3.26.3
      - comm==0.1.3
      - commonmark==0.9.1
      - conda-pack==0.6.0
      - confection==0.0.4
      - configobj==5.0.8
      - conllu==4.5.3
      - contourpy==1.0.7
      - cpufeature==0.2.1
      - cycler==0.11.0
      - cymem==2.0.7
      - debugpy==1.6.7
      - decorator==5.1.1
      - decord==0.6.0
      - defusedxml==0.7.1
      - deprecated==1.2.14
      - docker-pycreds==0.4.0
      - efficientnet-pytorch==0.7.1
      - einops==0.6.1
      - einops-exts==0.0.4
      - entrypoints==0.4
      - envisage==7.0.3
      - et-xmlfile==1.1.0
      - exceptiongroup==1.2.0
      - fairscale==0.4.13
      - fastapi==0.95.1
      - fastjsonschema==2.16.3
      - ffmpy==0.3.0
      - fonttools==4.38.0
      - fqdn==1.5.1
      - fschat==0.1.10
      - fsspec==2023.4.0
      - ftfy==6.1.1
      - future==0.18.3
      - gitdb==4.0.10
      - gitpython==3.1.31
      - google-auth==2.23.3
      - google-auth-oauthlib==1.0.0
      - gradio==3.23.0
      - gradio-client==0.0.8
      - grpcio==1.59.0
      - h11==0.14.0
      - h5py==3.9.0
      - hjson==3.1.0
      - httpcore==0.17.0
      - httpx==0.24.0
      - humanize==4.8.0
      - hyperlink==21.0.0
      - imageio==2.33.0
      - importlib-metadata==6.6.0
      - importlib-resources==5.12.0
      - inflate64==1.0.0
      - iniconfig==2.0.0
      - iopath==0.1.10
      - ipdb==0.13.13
      - ipykernel==6.22.0
      - ipython==8.12.0
      - ipython-genutils==0.2.0
      - isoduration==20.11.0
      - jedi==0.18.2
      - joblib==1.2.0
      - jsonpointer==2.3
      - jsonschema==4.17.3
      - jupyter-client==8.2.0
      - jupyter-core==5.3.0
      - jupyter-events==0.6.3
      - jupyter-server==2.5.0
      - jupyter-server-terminals==0.4.4
      - jupyterlab-pygments==0.2.2
      - kiwisolver==1.4.4
      - langcodes==3.3.0
      - lazy-loader==0.3
      - linecache2==1.0.0
      - linkify-it-py==2.0.0
      - lit==16.0.2
      - llvmlite==0.39.1
      - markdown==3.5
      - markdown-it-py==2.2.0
      - markdown2==2.4.8
      - markupsafe==2.1.2
      - matplotlib==3.7.0
      - matplotlib-inline==0.1.6
      - mdit-py-plugins==0.3.3
      - mdurl==0.1.2
      - mistune==2.0.5
      - multidict==6.0.4
      - multiprocess==0.70.15
      - multivolumefile==0.2.3
      - munch==4.0.0
      - murmurhash==1.0.9
      - mypy-extensions==1.0.0
      - nbclassic==0.5.6
      - nbclient==0.7.4
      - nbconvert==7.3.1
      - nbformat==5.8.0
      - nest-asyncio==1.5.6
      - nh3==0.2.11
      - nibabel==5.1.0
      - ninja==1.11.1
      - nltk==3.8.1
      - nmslib==2.1.1
      - notebook==6.5.4
      - notebook-shim==0.2.3
      - numba==0.56.4
      - numpy==1.23.5
      - nvidia-cublas-cu11==11.10.3.66
      - nvidia-cuda-cupti-cu11==11.7.101
      - nvidia-cuda-nvrtc-cu11==11.7.99
      - nvidia-cuda-runtime-cu11==11.7.99
      - nvidia-cudnn-cu11==8.5.0.96
      - nvidia-cufft-cu11==10.9.0.58
      - nvidia-curand-cu11==10.2.10.91
      - nvidia-cusolver-cu11==11.4.0.1
      - nvidia-cusparse-cu11==11.7.4.91
      - nvidia-nccl-cu11==2.14.3
      - nvidia-nvtx-cu11==11.7.91
      - oauthlib==3.2.2
      - omegaconf==2.3.0
      - open-clip-torch==2.20.0
      - openai==0.27.0
      - opencv-python==4.7.0.72
      - opencv-python-headless==4.8.0.74
      - openpyxl==3.1.2
      - orjson==3.8.11
      - packaging==23.0
      - pandas==2.0.1
      - pandocfilters==1.5.0
      - parso==0.8.3
      - pathtools==0.1.2
      - pathy==0.10.1
      - peft==0.2.0
      - pexpect==4.8.0
      - pickleshare==0.7.5
      - pillow==9.5.0
      - platformdirs==3.5.0
      - pluggy==1.3.0
      - portalocker==2.7.0
      - preshed==3.0.8
      - pretrainedmodels==0.7.4
      - prometheus-client==0.16.0
      - prompt-toolkit==3.0.38
      - protobuf==3.20.3
      - psutil==5.9.4
      - ptyprocess==0.7.0
      - pure-eval==0.2.2
      - py-cpuinfo==9.0.0
      - py-rsync==0.0.1a0.dev0
      - py7zr==0.20.8
      - pyarrow==11.0.0
      - pyasn1==0.5.0
      - pyasn1-modules==0.3.0
      - pybcj==1.0.2
      - pybind11==2.6.1
      - pycocoevalcap==1.2
      - pycocotools==2.0.6
      - pycryptodomex==3.19.1
      - pydantic==1.10.7
      - pydub==0.25.1
      - pyface==8.0.0
      - pygments==2.15.1
      - pynndescent==0.5.10
      - pyparsing==3.0.9
      - pyppmd==1.1.0
      - pyqt5==5.15.10
      - pyqt5-qt5==5.15.2
      - pyqt5-sip==12.13.0
      - pyrsistent==0.19.3
      - pysbd==0.3.4
      - pytest==7.4.3
      - python-json-logger==2.0.7
      - python-multipart==0.0.6
      - python-polylabel==0.6
      - python-rsync==0.1.0
      - pyzmq==25.0.2
      - pyzstd==0.15.9
      - qudida==0.0.4
      - regex==2022.10.31
      - requests==2.29.0
      - requests-oauthlib==1.3.1
      - rfc3339-validator==0.1.4
      - rfc3986-validator==0.1.1
      - rich==12.6.0
      - rsa==4.9
      - safetensors==0.3.1
      - scikit-image==0.22.0
      - scipy==1.10.1
      - scispacy==0.5.2
      - segmentation-models-pytorch==0.3.3
      - semantic-version==2.10.0
      - send2trash==1.8.2
      - sentence-transformers==2.2.2
      - sentencepiece==0.1.98
      - sentry-sdk==1.21.0
      - setproctitle==1.3.2
      - shapely==2.0.2
      - shellingham==1.5.4
      - shortuuid==1.0.11
      - simpleitk==2.2.1
      - smart-open==6.3.0
      - smmap==5.0.0
      - sniffio==1.3.0
      - soupsieve==2.4.1
      - spacy==3.4.4
      - spacy-legacy==3.0.12
      - spacy-loggers==1.0.4
      - srsly==2.4.6
      - stack-data==0.6.2
      - starlette==0.26.1
      - surface-distance-based-measures==0.1
      - svgwrite==1.4.3
      - swig==4.1.1
      - tenacity==8.2.2
      - tensorboard==2.14.1
      - tensorboard-data-server==0.7.1
      - terminado==0.17.1
      - texttable==1.7.0
      - thinc==8.1.9
      - threadpoolctl==3.1.0
      - tifffile==2023.9.26
      - timm==0.9.2
      - tinycss2==1.2.1
      - tomli==2.0.1
      - toolz==0.12.0
      - torchio==0.19.2
      - torchvision==0.15.2
      - tornado==6.3.1
      - tqdm==4.64.1
      - traceback2==1.4.0
      - traitlets==5.9.0
      - traits==6.4.3
      - traitsui==8.0.0
      - triton==2.0.0
      - typer==0.7.0
      - typing-extensions==4.5.0
      - typing-inspect==0.8.0
      - tzdata==2023.3
      - uc-micro-py==1.0.1
      - umap-learn==0.5.3
      - unittest2==1.1.0
      - unzip==1.0.0
      - uri-template==1.2.0
      - urllib3==1.26.15
      - uvicorn==0.22.0
      - vtk==9.3.0
      - wandb==0.15.0
      - wasabi==0.10.1
      - wavedrom==2.0.3.post3
      - wcwidth==0.2.6
      - webcolors==1.13
      - webdataset==0.2.48
      - webencodings==0.5.1
      - websocket-client==1.5.1
      - websockets==11.0.2
      - werkzeug==3.0.0
      - wrapt==1.16.0
      - xxhash==3.3.0
      - yarl==1.8.2
      - zipp==3.14.0
prefix: /home/zhouhy/anaconda3/envs/medversa