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Noelia Ferruz

nferruz
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AI & ML interests

artificial intelligence, protein design, structural biology.

Recent Activity

New activity 25 days ago
AI4PD/ZymCTRL:`evaluation_strategy` is deprecated and will be removed in version 4.46 of Transformers
New activity 27 days ago
nferruz/ProtGPT2:Update README.md
updated a dataset about 1 month ago
AI4PD/ZymCTRL
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nferruz's activity

New activity in AI4PD/ZymCTRL 25 days ago

`evaluation_strategy` is deprecated and will be removed in version 4.46 of Transformers
#13 opened 26 days ago by fstocco
New activity in nferruz/ProtGPT2 27 days ago

Update README.md

1
#49 opened 27 days ago by fstocco
New activity in AI4PD/ZymCTRL 2 months ago

Finetuned model generates sequences far different from sequences in the finetune training set

1
#11 opened 3 months ago by atqamar
New activity in nferruz/ProtGPT2 5 months ago

Resources required for fine tuning Protgpt2

8
#36 opened about 1 year ago by ChetnaA

Error during Finetuning

12
#48 opened 6 months ago by pawanpc
New activity in nferruz/ProtGPT2 6 months ago

OOM During Finetuning on A100 GPU

2
#47 opened 6 months ago by jashton1315
New activity in nferruz/ProtGPT2 7 months ago

How to finetune models on GPU?

1
#46 opened 7 months ago by Jonathanlin

Introducing protgpt2-distilled-tiny: A Leaner, Faster Approach to Protein Sequence Generation

1
#45 opened 7 months ago by littleworth
New activity in nferruz/UR50_2021_04 7 months ago

Guidance Needed for Training with nferruz/UR50_2021_04

1
#4 opened 8 months ago by littleworth
New activity in nferruz/ProtGPT2 8 months ago

how can i fine tune the model on the colab?

1
#43 opened 9 months ago by TomLong
New activity in nferruz/ProtGPT2 10 months ago

How can I generate a new sequence by fixing some of the residues ?

1
#42 opened 10 months ago by polytide

Problems encountered when fine-tuning model validation

1
#41 opened 10 months ago by ysy2002

Inquiry on ProtGPT2 Model Performance and Fine-Tuning Evaluation

1
#38 opened 12 months ago by littleworth

How to change the first generate amino acid?

1
#40 opened 11 months ago by Jonathanlin
New activity in nferruz/ProtGPT2 11 months ago

How to create embeddings using ProtGPT2

1
#39 opened 11 months ago by PurvaTijare
New activity in nferruz/ProtGPT2 about 1 year ago

how to define the compute_metrics function in fine-tuning

1
#37 opened about 1 year ago by Biohebb
New activity in AI4PD/ZymCTRL about 1 year ago

Many generated sequences are highly similar to WT sequences

1
#10 opened about 1 year ago by ShanGao
New activity in nferruz/ProtGPT2 about 1 year ago

Questions regarding fine tuning protgpt2

2
#35 opened about 1 year ago by xenidisv
New activity in nferruz/1.24.3.1 about 1 year ago

How to provide the prompt

1
#1 opened about 1 year ago by ShanGao
New activity in nferruz/ProtGPT2 about 1 year ago

How to fine-tune with dataset of multiple .csv.gz files and had some features or labels? Exemple with OAS database (antibody db)

5
#34 opened about 1 year ago by BioinfoProteo