README.md

metadata

license: mit
datasets:
  - keivalya/MedQuad-MedicalQnADataset
language:
  - en
library_name: adapter-transformers
metrics:
  - accuracy
  - bertscore
  - bleu
pipeline_tag: question-answering
tags:
  - medical

K23 MiniMed 모델 카드

K23 MiniMed는 Krew x Huggingface 2023 해커톤에서 원형석 멘토의 지도하에 개발된 Mistral 7b Beta Medical Fine Tune 모델입니다.

모델 세부사항

• 개발자: Tonic

• 후원: Tonic

• 공유자: K23-Krew-Hackathon

• 모델 유형: Mistral 7B-Beta Medical Fine Tune

• 언어 (NLP): 영어

• 라이센스: MIT

• Fine-tuning 기반 모델: Zephyr 7B-Beta

모델 출처

• 저장소: github
• 데모: pseudolab/K23MiniMed

사용법

이 모델은 교육 목적으로만 의학 질문 답변을 위한 대화형 애플리케이션용입니다.

직접 사용

Gradio 챗봇 앱을 만들어 의학적 질문을 하고 대화식으로 답변을 받습니다.

하류 사용

이 모델은 교육용으로만 사용됩니다. 추가적인 Fine-tuning과 사용 예시로는 공중 보건 & 위생, 개인 보건 & 위생, 의학 Q & A가 있습니다.

추천사항

사용 전에 항상 이 모델을 평가하고 벤치마킹하십시오. 사용 전에 편향을 평가하십시오. 그대로 사용하지 마시고 추가적으로 Fine-tuning하십시오.

훈련 세부사항

모델의 훈련 손실은 다음과 같습니다:

단계	훈련 손실
50	0.993800
100	0.620600
150	0.547100
200	0.524100
250	0.520500
300	0.559800
350	0.535500
400	0.505400

훈련 데이터

모델의 학습 가능한 매개변수: 21260288, 모든 매개변수: 3773331456, 학습 가능한 %: 0.5634354746703705.

결과

global_step=400에서의 훈련 손실은 0.6008514881134033입니다.

환경 영향

모델의 환경 영향은 머신러닝 영향 계산기를 사용하여 계산할 수 있습니다. 추정을 제공하기 위해서는 더 많은 세부 정보가 필요합니다.

기술 사양

모델 아키텍처와 목표

모델은 특정 설정을 가진 PeftModelForCausalLM을 사용합니다.

컴퓨팅 인프라

하드웨어

모델은 A100 하드웨어에서 훈련되었습니다.

소프트웨어

사용된 소프트웨어에는 peft, torch, bitsandbytes, python, 그리고 huggingface가 포함됩니다.

모델 카드 작성자

Tonic

모델 카드 연락처

Tonic

Model Card for K23 MiniMed

This is a Mistral 7b Beta Medical Fine Tune with a short number of steps , inspired by Wonhyeong Seo great mentorship during Krew x Huggingface 2023 hackathon.

Model Details

Model Description

• Developed by: Tonic
• Funded by [optional]: Tonic
• Shared by [optional]: K23-Krew-Hackathon
• Model type: Mistral 7B-Beta Medical Fine Tune
• Language(s) (NLP): English
• License: MIT
• Finetuned from model [optional]: Zephyr 7B-Beta

Model Sources [optional]

• Repository: github
• Demo [optional]: pseudolab/K23MiniMed

Uses

Use this model for conversational applications for medical question and answering for educational purposes only !

Direct Use

Make a gradio chatbot app to ask medical questions and get answers conversationaly.

Downstream Use [optional]

This model is for educational use only .

Further fine tunes and uses would include :

• public health & sanitation
• personal health & sanitation
• medical Q & A

Recommendations

• always evaluate this model before use
• always benchmark this model before use
• always evaluate bias before use
• do not use as is, fine tune further

How to Get Started with the Model

Use the code below to get started with the model.

from transformers import AutoConfig, AutoTokenizer, AutoModelForSeq2SeqLM, AutoModelForCausalLM, MistralForCausalLM
from peft import PeftModel, PeftConfig
import torch
import gradio as gr
import random
from textwrap import wrap

# Functions to Wrap the Prompt Correctly
def wrap_text(text, width=90):
    lines = text.split('\n')
    wrapped_lines = [textwrap.fill(line, width=width) for line in lines]
    wrapped_text = '\n'.join(wrapped_lines)
    return wrapped_text

def multimodal_prompt(user_input, system_prompt="You are an expert medical analyst:"):
    # Combine user input and system prompt
    formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

    # Encode the input text
    encodeds = tokenizer(formatted_input, return_tensors="pt", add_special_tokens=False)
    model_inputs = encodeds.to(device)

    # Generate a response using the model
    output = model.generate(
        **model_inputs,
        max_length=max_length,
        use_cache=True,
        early_stopping=True,
        bos_token_id=model.config.bos_token_id,
        eos_token_id=model.config.eos_token_id,
        pad_token_id=model.config.eos_token_id,
        temperature=0.1,
        do_sample=True
    )

    # Decode the response
    response_text = tokenizer.decode(output[0], skip_special_tokens=True)

    return response_text

# Define the device
device = "cuda" if torch.cuda.is_available() else "cpu"

# Use the base model's ID
base_model_id = "HuggingFaceH4/zephyr-7b-beta"
model_directory = "pseudolab/K23_MiniMed"

# Instantiate the Tokenizer
tokenizer = AutoTokenizer.from_pretrained("mistralai/Mistral-7B-v0.1", trust_remote_code=True, padding_side="left")
# tokenizer = AutoTokenizer.from_pretrained("Tonic/mistralmed", trust_remote_code=True, padding_side="left")
tokenizer.pad_token = tokenizer.eos_token
tokenizer.padding_side = 'left'

# Specify the configuration class for the model
#model_config = AutoConfig.from_pretrained(base_model_id)

# Load the PEFT model with the specified configuration
#peft_model = AutoModelForCausalLM.from_pretrained(base_model_id, config=model_config)

# Load the PEFT model
peft_config = PeftConfig.from_pretrained("pseudolab/K23_MiniMed")
peft_model = MistralForCausalLM.from_pretrained("https://huggingface.co/HuggingFaceH4/zephyr-7b-beta", trust_remote_code=True)
peft_model = PeftModel.from_pretrained(peft_model, "pseudolab/K23_MiniMed")

class ChatBot:
    def __init__(self):
        self.history = []

class ChatBot:
    def __init__(self):
        # Initialize the ChatBot class with an empty history
        self.history = []

    def predict(self, user_input, system_prompt="You are an expert medical analyst:"):
        # Combine the user's input with the system prompt
        formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

        # Encode the formatted input using the tokenizer
        user_input_ids = tokenizer.encode(formatted_input, return_tensors="pt")

        # Generate a response using the PEFT model
        response = peft_model.generate(input_ids=user_input_ids, max_length=512, pad_token_id=tokenizer.eos_token_id)

        # Decode the generated response to text
        response_text = tokenizer.decode(response[0], skip_special_tokens=True)
        
        return response_text  # Return the generated response

bot = ChatBot()

title = "👋🏻토닉의 미스트랄메드 채팅에 오신 것을 환영합니다🚀👋🏻Welcome to Tonic's MistralMed Chat🚀"
description = "이 공간을 사용하여 현재 모델을 테스트할 수 있습니다. [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) 또는 이 공간을 복제하고 로컬 또는 🤗HuggingFace에서 사용할 수 있습니다. [Discord에서 함께 만들기 위해 Discord에 가입하십시오](https://discord.gg/VqTxc76K3u). You can use this Space to test out the current model [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) or duplicate this Space and use it locally or on 🤗HuggingFace. [Join me on Discord to build together](https://discord.gg/VqTxc76K3u)."
examples = [["[Question:] What is the proper treatment for buccal herpes?", "You are a medicine and public health expert, you will receive a question, answer the question, and provide a complete answer"]]

iface = gr.Interface(
    fn=bot.predict,
    title=title,
    description=description,
    examples=examples,
    inputs=["text", "text"],  # Take user input and system prompt separately
    outputs="text",
    theme="ParityError/Anime"
)

iface.launch()

Training Details

Step	Training Loss
50	0.993800
100	0.620600
150	0.547100
200	0.524100
250	0.520500
300	0.559800
350	0.535500
400	0.505400

Training Data

{trainable params: 21260288 || all params: 3773331456 || trainable%: 0.5634354746703705}

Training Procedure

Preprocessing [optional]

Lora32bits

Speeds, Sizes, Times [optional]

 metrics={'train_runtime': 1700.1608, 'train_samples_per_second': 1.882, 'train_steps_per_second': 0.235, 'total_flos': 9.585300996096e+16, 'train_loss': 0.6008514881134033, 'epoch': 0.2})

Results

TrainOutput

global_step=400, training_loss=0.6008514881134033

Summary

Environmental Impact

Carbon emissions can be estimated using the Machine Learning Impact calculator presented in Lacoste et al. (2019).

• Hardware Type: {{ hardware | default("[More Information Needed]", true)}}
• Hours used: {{ hours_used | default("[More Information Needed]", true)}}
• Cloud Provider: {{ cloud_provider | default("[More Information Needed]", true)}}
• Compute Region: {{ cloud_region | default("[More Information Needed]", true)}}
• Carbon Emitted: {{ co2_emitted | default("[More Information Needed]", true)}}

Technical Specifications

Model Architecture and Objective

PeftModelForCausalLM(
  (base_model): LoraModel(
    (model): MistralForCausalLM(
      (model): MistralModel(
        (embed_tokens): Embedding(32000, 4096)
        (layers): ModuleList(
          (0-31): 32 x MistralDecoderLayer(
            (self_attn): MistralAttention(
              (q_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (k_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (v_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (o_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (rotary_emb): MistralRotaryEmbedding()
            )
            (mlp): MistralMLP(
              (gate_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (up_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (down_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=14336, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=14336, out_features=4096, bias=False)
              )
              (act_fn): SiLUActivation()
            )
            (input_layernorm): MistralRMSNorm()
            (post_attention_layernorm): MistralRMSNorm()
          )
        )
        (norm): MistralRMSNorm()
      )
      (lm_head): Linear(
        in_features=4096, out_features=32000, bias=False
        (lora_dropout): ModuleDict(
          (default): Dropout(p=0.05, inplace=False)
        )
        (lora_A): ModuleDict(
          (default): Linear(in_features=4096, out_features=8, bias=False)
        )
        (lora_B): ModuleDict(
          (default): Linear(in_features=8, out_features=32000, bias=False)
        )
        (lora_embedding_A): ParameterDict()
        (lora_embedding_B): ParameterDict()
      )
    )
  )
)

Compute Infrastructure

Hardware

A100

Software

peft , torch, bitsandbytes, python, huggingface

Model Card Authors [optional]

Tonic

Model Card Contact

Tonic