license: cc-by-4.0
library_name: scvi-tools
tags:
- biology
- genomics
- single-cell
- model_cls_name:CondSCVI
- scvi_version:0.20.0b1
- anndata_version:0.8.0
- modality:rna
- tissue:Trachea
- annotated:True
Description
Tabula sapiens. An across organ dataset of cell-types in human tissues.
Model properties
Many model properties are in the model tags. Some more are listed below.
model_init_params:
{
"n_hidden": 128,
"n_latent": 5,
"n_layers": 2,
"weight_obs": false,
"dropout_rate": 0.05
}
model_setup_anndata_args:
{
"labels_key": "cell_ontology_class",
"layer": null
}
model_summary_stats:
| Summary Stat Key | Value |
|---|---|
| n_cells | 5112 |
| n_labels | 18 |
| n_vars | 4000 |
model_data_registry:
| Registry Key | scvi-tools Location |
|---|---|
| X | adata.X |
| labels | adata.obs['_scvi_labels'] |
model_parent_module: scvi.model
data_is_minified: False
Training data
This is an optional link to where the training data is stored if it is too large to host on the huggingface Model hub.
Training data url: https://zenodo.org/api/files/fd2c61e6-f4cd-4984-ade0-24d26d9adef6/TS_Trachea_filtered.h5ad
Training code
This is an optional link to the code used to train the model.
Training code url: https://github.com/scvi-hub-references/tabula_sapiens/main.py
References
The Tabula Sapiens: A multi-organ, single-cell transcriptomic atlas of humans. The Tabula Sapiens Consortium. Science 2022.05.13; doi: https: //doi.org/10.1126/science.abl4896