metadata

title: Hexviz
emoji: 👁️🧬
colorFrom: green
colorTo: purple
sdk: streamlit
sdk_version: 1.17.0
python_version: 3.10.5
app_file: ./hexviz/🧬Attention_Visualization.py
pinned: true
tags:
  - protein language models
  - attention analysis
  - protein structure
  - biology

hexviz

Visualize attention pattern on 3D protein structures

Install and run

poetry install

poetry run streamlit run hexviz/streamlit/Attention_On_Structure.py

Export dependecies from poetry

Spaces require dependencies in a requirements.txt file. Export depencies from poetry's pyproject.toml file with:

poetry export -f requirements.txt --output requirements.txt --without-hashes

Acknowledgements

This project builds on the attention visualization introduced and developed in https://github.com/salesforce/provis#provis-attention-visualizer