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hexviz

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Store selected head and layer sequence
2d68959

aksell commited on

Add report a bug and get help link + about us text
48a0092

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Clear selected chains when PDB is changed
8496929

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Hide manual labeling behind selector
a5100f8

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Share pdb selector between views
c2b2898

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Persist selected PDB, chain and model in session state
708426b

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Change example PDB to one with a ligand
ae26fb8

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Show ligands
2e6af7e

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🧬emojis in filenames!
e8f7474

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Capitalize page name
179d4fd

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Update text description
c438fc8

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Don't skip heads and layers by deafult
7a11152

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Allow selecting chain ID in heatmap
e9d64be

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Allow plotting single row or column or a single head
13af878

aksell commited on

Use dynamic offset for row labels, makes them nice ✨
5ddca75

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Fix subplot sizing and bug
0fa194b

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Copy attention tensor to CPU for streamlit caching
9d9c196

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Allow selecting heads to plot
8799d0b

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Fix README typo
28de159

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Change default selected head to a more interesting one
fb742f5

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Tweak interesting heads view
18e02d3

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Add text and slice selection to head selection view
51f3451

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Rename app.py to Attention_Visualization.py
a9afebb

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First draft of "Find interesting heads" page
2410bbd

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Add table of top_n attention pairs
b7cb94d

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Make model selector more compact
1b13d7f

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Add sections to sidebar
b3a37f0

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Move attention parameters to sidebar
6bb6142

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Label top n attention pairs
4355c21

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Change default layer and tweak text
beb84f6

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Allow highlighting of residues
61419b7

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Allow selecting individual chains
58b87e3

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Plot avg attention not sum
3de389d

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Reduce attention cylinder size
97dc04c

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Acknowledge provis in the README
2baeea3

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Remove Prot-T5 and ProtGPT2
386fb31

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Link to provis as a source for the attention visualization
6002f51

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Changet test structure in get_structure
d1b48a1

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Clean up view
bf964bb

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Show EC class if using ZymCTRL and EC class is available in PDB
79ff34a

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Add PROT BERT
1c423ed

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Update requirements.txt from poetry
02840f4

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Link to RCSB structure
f60f302

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Hide min attention slider in expander
c621eec

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Split attention.py into attention.py and models.py
eb9ae1f

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Cache TAPE-BERT loading
e07549d

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Disable ProtGPT2
4a42326

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Add ProtGPT2 model
2338bb4

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Remove unused debuging code path
1431daf

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Update text and title
db81f50

aksell commited on