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NiniCat
/
CRISPRTool
like
2
Sleeping
App
Files
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15
bc641c8
CRISPRTool
3 contributors
History:
150 commits
supercat666
fix cas9 and cas12 output
bc641c8
5 months ago
.idea
added cas9 off
9 months ago
cas12_model
upload cas12_bilstm h5 file (#9)
5 months ago
cas13_model
Updated cas13 model
10 months ago
cas9_model
upload cas9_att h5 file (#10)
5 months ago
transcripts
Upload gencode.v19.pc_transcripts.fa.gz
10 months ago
.gitattributes
1.83 kB
qingyang's new cas12
5 months ago
Human_genes_HUGO_02242024_annotation.txt
26.3 MB
LFS
Upload Human_genes_HUGO_02242024_annotation.txt
7 months ago
README.md
253 Bytes
Update README.md
10 months ago
SRR25934512.filter.snps.indels.vcf
58.2 MB
LFS
qingyang's new data
5 months ago
SRR25934512.filter.snps.indels.vcf.gz
11 MB
LFS
qingyang's new data
5 months ago
SRR25934512.filter.snps.indels.vcf.gz.tbi
407 kB
qingyang's new data
5 months ago
app.py
32.7 kB
fix cas9 and cas12 output
5 months ago
calibration_params.pkl
pickle
Detected Pickle imports (11)
"pandas.core.indexes.base._new_Index"
,
"pandas._libs.internals._unpickle_block"
,
"pandas.core.internals.managers.BlockManager"
,
"numpy.core.multiarray._reconstruct"
,
"builtins.slice"
,
"pandas.core.indexes.base.Index"
,
"numpy.dtype"
,
"pandas.core.indexes.numeric.Int64Index"
,
"pandas.core.frame.DataFrame"
,
"numpy.core.numeric._frombuffer"
,
"numpy.ndarray"
How to fix it?
885 Bytes
LFS
Updated cas13 model
10 months ago
cas12.py
9.18 kB
Update cas12.py (#7)
6 months ago
cas12lstm.py
9.6 kB
fix cas9 and cas12 output
5 months ago
cas12lstmvcf.py
10.6 kB
Update cas12lstmvcf.py (#14)
5 months ago
cas9att.py
11.5 kB
fix cas9 and cas12 output
5 months ago
cas9attvcf.py
15 kB
Update cas9attvcf.py (#12)
5 months ago
cas9off.py
5.41 kB
fixed cas9off
9 months ago
cas9on.py
8.12 kB
change cas9
5 months ago
crisprTool.md
182 Bytes
fix
7 months ago
requirements.txt
165 Bytes
new enviroment
5 months ago
scoring_params.pkl
pickle
Detected Pickle imports (11)
"pandas.core.indexes.base._new_Index"
,
"pandas._libs.internals._unpickle_block"
,
"pandas.core.indexes.range.RangeIndex"
,
"pandas.core.internals.managers.BlockManager"
,
"numpy.core.multiarray._reconstruct"
,
"builtins.slice"
,
"pandas.core.indexes.base.Index"
,
"numpy.dtype"
,
"pandas.core.frame.DataFrame"
,
"numpy.core.numeric._frombuffer"
,
"numpy.ndarray"
How to fix it?
706 Bytes
LFS
Updated cas13 model
10 months ago
tiger.py
17.2 kB
Updated cas13 model
10 months ago