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History: 140 commits

LfOreVEr's picture

upload cas12_bilstm h5 file

8e0b831 verified 10 months ago

.idea
added cas9 off about 1 year ago
cas12_model
upload cas12_bilstm h5 file 10 months ago
cas13_model
Updated cas13 model over 1 year ago
cas9_model
qingyang's new cas9 10 months ago
transcripts
Upload gencode.v19.pc_transcripts.fa.gz over 1 year ago
.gitattributes

1.83 kB

qingyang's new cas12 10 months ago
Human_genes_HUGO_02242024_annotation.txt

26.3 MB
LFS

Upload Human_genes_HUGO_02242024_annotation.txt about 1 year ago
README.md

253 Bytes

Update README.md over 1 year ago
SRR25934512.filter.snps.indels.vcf

58.2 MB
LFS

qingyang's new data 10 months ago
SRR25934512.filter.snps.indels.vcf.gz

11 MB
LFS

qingyang's new data 10 months ago
SRR25934512.filter.snps.indels.vcf.gz.tbi

407 kB

qingyang's new data 10 months ago
app.py

31.4 kB

change cas9 10 months ago
calibration_params.pkl
Detected Pickle imports (11)
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.internals.managers.BlockManager",
- "numpy.core.multiarray._reconstruct",
- "builtins.slice",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "pandas.core.indexes.numeric.Int64Index",
- "pandas.core.frame.DataFrame",
- "numpy.core.numeric._frombuffer",
- "numpy.ndarray"
How to fix it?
885 Bytes
LFS

Updated cas13 model over 1 year ago
cas12.py

9.18 kB

Update cas12.py (#7) 11 months ago
cas12lstm.py

7.07 kB

change cas9 10 months ago
cas12lstmvcf.py

10.5 kB

change cas9 10 months ago
cas9att.py

11.5 kB

change cas9 10 months ago
cas9attvcf.py

14.9 kB

change cas9 10 months ago
cas9off.py

5.41 kB

fixed cas9off about 1 year ago
cas9on.py

8.12 kB

change cas9 10 months ago
crisprTool.md

182 Bytes

fix about 1 year ago
requirements.txt

165 Bytes

new enviroment 10 months ago
scoring_params.pkl
Detected Pickle imports (11)
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.indexes.range.RangeIndex",
- "pandas.core.internals.managers.BlockManager",
- "numpy.core.multiarray._reconstruct",
- "builtins.slice",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "pandas.core.frame.DataFrame",
- "numpy.core.numeric._frombuffer",
- "numpy.ndarray"
How to fix it?
706 Bytes
LFS

Updated cas13 model over 1 year ago
tiger.py

17.2 kB

Updated cas13 model over 1 year ago