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| import gradio as gr | |
| from mammal_demo.demo_framework import ( | |
| ModelRegistry, | |
| TaskRegistry, | |
| ) | |
| from mammal_demo.dti_task import DtiTask | |
| from mammal_demo.ppi_task import PpiTask | |
| from mammal_demo.ps_task import PsTask | |
| from mammal_demo.tcr_task import TcrTask | |
| all_tasks = TaskRegistry() | |
| all_models = ModelRegistry() | |
| # first create the required tasks | |
| # Note that the tasks need access to the models, as the model to use depends on the state of the widget | |
| # we pass the all_models dict and update it when we actualy have the models. | |
| ppi_task = all_tasks.register_task(PpiTask(model_dict=all_models)) | |
| tdi_task = all_tasks.register_task(DtiTask(model_dict=all_models)) | |
| ps_task = all_tasks.register_task(PsTask(model_dict=all_models)) | |
| # tcr_task = all_tasks.register_task(TcrTask(model_dict=all_models)) | |
| tcr_task = "not ready yet" | |
| # create the model holders. hold the model and the tokenizer, lazy download | |
| # note that the list of relevent tasks needs to be stated. | |
| all_models.register_model( | |
| model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd", | |
| task_list=[tdi_task], | |
| ) | |
| all_models.register_model( | |
| model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind", | |
| task_list=[tcr_task], | |
| ) | |
| all_models.register_model( | |
| model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.protein_solubility", | |
| task_list=[ps_task], | |
| ) | |
| all_models.register_model( | |
| model_path="ibm/biomed.omics.bl.sm.ma-ted-458m", | |
| task_list=[ppi_task, tcr_task], | |
| ) | |
| all_models.register_model("https://huggingface.co/ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_tox") | |
| all_models.register_model("https://huggingface.co/ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_fda") | |
| all_models.register_model("https://huggingface.co/ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_bbbp") | |
| def create_application(): | |
| def task_change(value): | |
| visibility = [gr.update(visible=(task == value)) for task in all_tasks.keys()] | |
| choices = [ | |
| model_name | |
| for model_name, model in all_models.items() | |
| if value in model.tasks | |
| ] | |
| if choices: | |
| return ( | |
| gr.update(choices=choices, value=choices[0], visible=True), | |
| *visibility, | |
| ) | |
| else: | |
| return (gr.update(visible=False), *visibility) | |
| def model_change(value): | |
| return gr.update(link=f"https://huggingface.co/{value}",visible=True) | |
| with gr.Blocks(theme="Zarkel/IBM_Carbon_Theme") as application: | |
| task_dropdown = gr.Dropdown( | |
| choices=["Select task"] + list(all_tasks.keys()), label="Mammal Task" | |
| ) | |
| task_dropdown.interactive = True | |
| with gr.Row() : | |
| model_name_dropdown = gr.Dropdown( | |
| choices=[ | |
| model_name | |
| for model_name, model in all_models.items() | |
| if task_dropdown.value in model.tasks | |
| ], | |
| interactive=True, | |
| label="Matching Mammal models", | |
| visible=False, | |
| scale=10, | |
| ) | |
| goto_card_button = gr.Button("Link to model card",size='sm',scale=0,visible=False) | |
| model_name_dropdown.change( | |
| model_change, | |
| inputs=[model_name_dropdown], | |
| outputs=[goto_card_button] | |
| ) | |
| task_dropdown.change( | |
| task_change, | |
| inputs=[task_dropdown], | |
| outputs=[model_name_dropdown] | |
| + [ | |
| all_tasks[task].demo(model_name_widgit=model_name_dropdown) | |
| for task in all_tasks | |
| ], | |
| ) | |
| # def set_demo_vis(main_text): | |
| # main_text=main_text | |
| # print(f"main text is {main_text}") | |
| # return gr.Group(visible=True) | |
| # #return gr.Group(visible=(main_text == "PPI")) | |
| # # , gr.Group( visible=(main_text == "DTI") ) | |
| # task_dropdown.change( | |
| # set_ppi_vis, inputs=task_dropdown, outputs=[ppi_demo] | |
| # ) | |
| return application | |
| full_demo = None | |
| def main(): | |
| global full_demo | |
| full_demo = create_application() | |
| full_demo.launch(show_error=True, share=False) | |
| # full_demo.launch(show_error=True, share=True) | |
| if __name__ == "__main__": | |
| main() | |