Encoding for long contexts

#28
by yoavkt - opened

Hello,
I want to use the DNABERT-2 model to encode long genes' base pair representation (above 100k bp, in the case of BRCA1 for example). Is there a recommended method for doing so?

This thread on the original DNABERT models' GitHub repository might be useful: https://github.com/jerryji1993/DNABERT/issues/39. I hope it helps!

zhihan1996.JPG

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