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ctheodoris
/
Geneformer
like
181
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
413
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e562c0c
Geneformer
13 contributors
History:
100 commits
tigerdeF
Upload 15 files
e562c0c
11 months ago
examples
Add option to output embs as tensor
11 months ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy
about 1 year ago
geneformer-12L-30M
Upload 12 layer Geneformer model
about 1 year ago
geneformer
Add option to output embs as tensor
11 months ago
.gitattributes
1.3 kB
Adding `safetensors` variant of this model (#209)
about 1 year ago
.gitignore
3.08 kB
Add gitignore file
over 1 year ago
Cell_classifier.py
39.9 kB
Upload 15 files
11 months ago
Gene_classifier.py
31 kB
Upload 15 files
11 months ago
Immune_modelpredictions.pickle
99.1 kB
Upload 15 files
11 months ago
MANIFEST.in
127 Bytes
Fixes to stats and adding gene dict attempt number 2 (#13)
over 1 year ago
Modular_usage.md
5.19 kB
Upload 15 files
11 months ago
README.md
6.27 kB
Update model card to emphasize need to install git-lfs and suggest https method
11 months ago
config.json
565 Bytes
upload Geneformer 6L-30M config
over 2 years ago
gene_embclasses.txt
17 Bytes
Upload 15 files
11 months ago
gene_embdataset.pk
1.76 kB
Upload 15 files
11 months ago
model.safetensors
41.2 MB
LFS
Adding `safetensors` variant of this model (#209)
about 1 year ago
pytorch_model.bin
pickle
Detected Pickle imports (4)
"torch._utils._rebuild_tensor_v2"
,
"torch.LongStorage"
,
"collections.OrderedDict"
,
"torch.FloatStorage"
What is a pickle import?
41.2 MB
LFS
upload Geneformer 6L-30M
over 2 years ago
setup.py
656 Bytes
Add option to output embs as tensor
11 months ago
training_args.bin
pickle
Detected Pickle imports (4)
"transformers.trainer_utils.IntervalStrategy"
,
"transformers.training_args.TrainingArguments"
,
"transformers.trainer_utils.SchedulerType"
,
"torch.device"
How to fix it?
2.61 kB
LFS
upload training args for Geneformer 6L-30M
over 2 years ago