metadata
license: mit
Description
Structural Class Prediction is a multi-class classification task to predict the correct structural class of given protein. This task is is built on the SCOP database.
Splits
Structure type: PDB
The dataset is from ProteinShake Building datasets and benchmarks for deep learning on protein structures. We use the splits based on 70% structure similarity, with the number of training, validation and test set shown below:
- Train: 7990
- Valid: 955
- Test: 1005
Data format
We organize all data in LMDB format. The architecture of the databse is like:
length: The number of samples
0:
- name: The PDB ID of the protein
- chain: The chain ID of the protein
- seq: The structure-aware sequence
- plddt: pLDDT values at all positions
- label: classification label of the sequence
1:
···