| # The Cancer Genome Atlas Ovarian Cancer (NSCLC-Radiomics) | |
| The models featured in this repository uses images from the publically available [NSCLC-Radiomics](https://wiki.cancerimagingarchive.net/display/Public/NSCLC-Radiomics) Dataset. Download the data from TCIA with **Descriptive Directory Name** download option. | |
| ## Converting Images | |
| Convert DICOM images and segmentation to NIFTI format using [pydicom-seg](https://razorx89.github.io/pydicom-seg/guides/read.html). | |
| - `python convert_segm.py` | |
| ## Segmentations | |
| Images will have one of the following segmentation files: | |
| ``` | |
| ─ seg-Esophagus.nii.gz | |
| ─ seg-GTV-1.nii.gz | |
| ─ seg-Heart.nii.gz | |
| ─ seg-Lung-Left.nii.gz | |
| ─ seg-Lung-Right.nii.gz | |
| ─ seg-Spinal-Cord.nii.gz | |
| ``` | |
| ## Requirements | |
| pandas==1.5.0 | |
| pydicom==2.3.1 | |
| pydicom-seg==0.4.1 | |
| SimpleITK==2.2.0 | |
| tqdm==4.64.1 | |
| ## Citation | |
| If using this repository, please cite the following works: | |
| ``` | |
| Data Citation | |
| Aerts, H. J. W. L., Wee, L., Rios Velazquez, E., Leijenaar, R. T. H., Parmar, C., Grossmann, P., | |
| Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., | |
| Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2019). | |
| Data From NSCLC-Radiomics (version 4) [Data set]. | |
| The Cancer Imaging Archive. | |
| https://doi.org/10.7937/K9/TCIA.2015.PF0M9REI | |
| Publication Citation | |
| Aerts, H. J. W. L., Velazquez, E. R., Leijenaar, R. T. H., Parmar, C., Grossmann, P., Carvalho, S., | |
| Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., | |
| Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2014, June 3). | |
| Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. | |
| Nature Communications. Nature Publishing Group. | |
| https://doi.org/10.1038/ncomms5006 (link) | |
| TCIA Citation | |
| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, | |
| Tarbox L, Prior F. | |
| The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, | |
| Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. | |
| https://doi.org/10.1007/s10278-013-9622-7 | |
| ``` | |