|
--- |
|
|
|
task_categories: |
|
- image-classification |
|
- image-segmentation |
|
- feature-extraction |
|
- zero-shot-classification |
|
- fill-mask |
|
size_categories: |
|
- 10K<n<100K |
|
tags: |
|
- biology |
|
- cells |
|
- radiation |
|
- microscopy |
|
- GeneLab |
|
--- |
|
|
|
# Dataset Card for Dataset GeneLab_BPS_BenchmarkData |
|
|
|
## Dataset Details |
|
|
|
This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/ |
|
|
|
Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks. |
|
|
|
### Dataset Description |
|
|
|
- **Curated by:** Frank Soboczenski |
|
- **Funded by [optional]:** [More Information Needed] |
|
- **Shared by [optional]:** [More Information Needed] |
|
- **Language(s) (NLP):** [More Information Needed] |
|
- **License:** There are no restrictions on the use of this data. |
|
|
|
## Further Documentation |
|
|
|
https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub |
|
|
|
### Update Frequency |
|
|
|
New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available. |
|
|
|
## Dataset Structure |
|
|
|
GeneLab_BPS_BenchmarkData/<br> |
|
├── README.md<br> |
|
└── data/<br> |
|
├── High_Energy_Ion_Fe_Nuclei/<br> |
|
│ └── .tif<br> |
|
│ └── ...<br> |
|
└── XRay_irradiated_Nucleiation/<br> |
|
└── .tif<br> |
|
└── ...<br> |
|
|
|
## How to Cite |
|
|
|
Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData |
|
|
|
## Publications |
|
|
|
- Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes |
|
- NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative |
|
|
|
## Dataset Card Authors [optional] |
|
|
|
Lauren Sanders (lauren.m.sanders@nasa.gov) |
|
|
|
## Dataset Card Contact |
|
|
|
Frank Soboczenski (Frank.Soboczenski@york.ac.uk) |
