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songlab
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TraitGym

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Subset (4)

complex_traits · 11.4k rows

Split (1)

test · 11.4k rows

chrom stringclasses 22 values	pos int64 99.5k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	trait stringclasses 259 values	label bool 2 classes	maf float64 0 0.5	ld_score float64 1.53 628	consequence stringclasses 16 values	tss_dist int64 0 1.58M	match_group stringlengths 5 37
1	78,999,088	G	C	0		false	0.024382	31.752	intron_variant	7,641	intron_variant_4
1	79,028,251	T	C	0.000577		false	0.14339	92.861	5_prime_UTR_variant	9	5_prime_UTR_variant_2
1	81,398,511	G	A	0		false	0.014057	12.721	intron_variant	92,344	intron_variant_3
1	81,625,236	G	A	0		false	0.001716	6.6767	DNase-H3K4me3	74,533	DNase-H3K4me3_0
1	81,959,512	A	C	0		false	0.35263	155.63	intron_variant	16,542	intron_variant_12
1	82,406,479	G	A	0		false	0.32975	56.267	intron_variant	426,589	intron_variant_6
1	82,411,036	G	A	0		false	0.29709	67.711	intron_variant	431,146	intron_variant_6
1	82,416,721	T	A	0		false	0.31438	43.127	intron_variant	436,831	intron_variant_6
1	84,506,286	G	T	0		false	0.096113	130.03	5_prime_UTR_variant	12	5_prime_UTR_variant_0
1	84,506,376	C	G	0		false	0.096059	130.08	5_prime_UTR_variant	9	5_prime_UTR_variant_0
1	84,700,878	G	A	0		false	0.14885	129.21	dELS_flank	10,074	dELS_flank_7
1	84,799,291	A	G	0		false	0.27336	61	intergenic_variant	66,867	intergenic_variant_2
1	85,198,016	T	C	0		false	0.23509	91.094	dELS	2,999	dELS_2
1	85,422,070	C	T	0		false	0.049631	68.456	intron_variant	17,541	intron_variant_8
1	86,396,561	G	T	0		false	0.022333	88.828	PLS_flank	218	PLS_flank_0
1	86,435,077	A	G	0		false	0.14176	134	dELS_flank	10,905	dELS_flank_7
1	86,435,782	T	A	0		false	0.14203	133.67	dELS_flank	11,610	dELS_flank_7
1	87,761,437	T	G	0.958607	PrC	true	0.30707	50.805	intron_variant	429,768	intron_variant_6
1	87,826,877	T	G	0		false	0.46318	59.279	dELS	495,208	dELS_12
1	88,175,380	A	G	0.993992	Hb,Ht	true	0.42134	44.304	dELS	508,841	dELS_12
1	88,175,851	A	T	0.000586		false	0.35246	40.381	dELS	508,370	dELS_12
1	88,269,192	T	C	0		false	0.34527	147.19	non_coding_transcript_exon_variant	415,029	non_coding_transcript_exon_variant_7
1	88,270,938	G	A	0.000948		false	0.35965	140.83	non_coding_transcript_exon_variant	413,283	non_coding_transcript_exon_variant_7
1	88,742,005	T	G	0.001321		false	0.006149	23.908	dELS_flank	29,449	dELS_flank_6
1	89,628,669	G	T	0.000544		false	0.48467	152.13	non_coding_transcript_exon_variant	4,450	non_coding_transcript_exon_variant_5
1	89,628,800	T	C	0.000548		false	0.48462	152.13	non_coding_transcript_exon_variant	4,319	non_coding_transcript_exon_variant_5
1	89,630,131	C	A	0.000546		false	0.48434	152.29	non_coding_transcript_exon_variant	2,988	non_coding_transcript_exon_variant_5
1	89,631,695	G	C	0.000572		false	0.48472	152.77	non_coding_transcript_exon_variant	1,424	non_coding_transcript_exon_variant_5
1	89,897,080	G	A	0		false	0.29973	34.61	dELS_flank	50,499	dELS_flank_0
1	89,982,896	A	G	0.002278		false	0.49673	37.036	dELS	12,213	dELS_9
1	89,994,923	C	A	0		false	0.085196	39.773	PLS	186	PLS_2
1	90,953,114	T	C	0		false	0.001837	5.9599	DNase-H3K4me3	68,342	DNase-H3K4me3_0
1	91,605,253	G	A	0		false	0.013292	20.346	dELS_flank	104,114	dELS_flank_4
1	91,684,279	C	A	0.001191		false	0.255	47.251	dELS_flank	177,313	dELS_flank_12
1	91,841,501	A	G	0		false	0.35266	164.55	intron_variant	20,091	intron_variant_12
1	91,848,347	G	A	0		false	0.34732	166.18	intron_variant	13,245	intron_variant_12
1	92,327,291	A	G	0		false	0.004622	25.018	dELS_flank	28,231	dELS_flank_6
1	92,460,097	G	C	0.999618	Mono	true	0.015038	78.652	dELS	20,387	dELS_13
1	92,515,679	T	G	0.995661	Mono	true	0.004336	24.164	dELS_flank	28,753	dELS_flank_6
1	92,877,333	C	T	0		false	0.024647	88.889	PLS_flank	182	PLS_flank_0
1	93,585,186	C	T	0		false	0.013032	28.814	PLS	103	PLS_0
1	93,985,451	T	C	0		false	0.44916	140.93	intergenic_variant	75,994	intergenic_variant_6
1	94,095,933	A	G	0		false	0.4792	37.302	dELS	25,191	dELS_21
1	94,218,581	T	A	0.999009	AG	true	0.091853	66.656	dELS	19,002	dELS_14
1	94,324,029	C	T	0.002609		false	0.095933	57.836	pELS	86,395	pELS_3
1	94,591,371	G	A	0		false	0.059824	34.352	non_coding_transcript_exon_variant	49,611	non_coding_transcript_exon_variant_0
1	94,615,243	G	A	0		false	0.010695	18.068	non_coding_transcript_exon_variant	73,483	non_coding_transcript_exon_variant_6
1	94,646,772	A	G	0		false	0.010146	18.426	dELS_flank	105,012	dELS_flank_4
1	94,823,295	G	C	0		false	0.2367	97.691	dELS	2,644	dELS_2
1	94,911,174	T	C	0		false	0.046542	68.614	intron_variant	14,626	intron_variant_8
1	94,928,796	T	A	0		false	0.47966	152.87	non_coding_transcript_exon_variant	1,572	non_coding_transcript_exon_variant_5
1	97,434,996	A	T	0		false	0.43248	67.239	dELS	486,037	dELS_12
1	97,478,503	G	T	0		false	0.30502	52.662	intron_variant	442,530	intron_variant_6
1	99,531,153	A	G	0		false	0.002629	6.4553	intron_variant	114,959	intron_variant_13
1	99,752,632	C	T	0.986687	Height	true	0.14405	132.79	dELS_flank	13,160	dELS_flank_7
1	100,353,172	T	G	0.943291	eGFR	true	0.27882	147.72	pELS	222	pELS_0
1	101,087,576	C	G	0		false	0.045747	27.483	non_coding_transcript_exon_variant	61,783	non_coding_transcript_exon_variant_3
1	101,089,913	T	C	0		false	0.035771	23.031	non_coding_transcript_exon_variant	64,120	non_coding_transcript_exon_variant_3
1	101,129,798	C	T	0		false	0.016688	18.822	dELS_flank	104,005	dELS_flank_4
1	101,193,787	T	C	1	GGT	true	0.26372	93.243	dELS	43,077	dELS_15
1	101,236,803	T	C	0.976767	Lym	true	0.017338	14.002	pELS	61	pELS_1
1	101,260,049	T	C	0		false	0.094242	54.666	dELS	21,713	dELS_5
1	101,267,901	C	T	0.968846	Lym,WBC	true	0.001611	6.7887	intergenic_variant	29,565	intergenic_variant_3
1	101,826,754	A	C	0		false	0.009162	5.1814	intron_variant	10,274	intron_variant_7
1	101,856,883	T	C	0		false	0.13454	64.785	intron_variant	9,909	intron_variant_0
1	101,858,343	A	G	0		false	0.13445	64.89	intron_variant	11,369	intron_variant_0
1	101,861,072	T	A	0		false	0.13452	64.948	intron_variant	14,098	intron_variant_0
1	101,861,587	T	C	0		false	0.13446	64.96	intron_variant	14,613	intron_variant_0
1	101,861,776	T	C	0		false	0.13445	64.964	intron_variant	14,802	intron_variant_0
1	102,026,582	T	C	0		false	0.001936	6.7009	intergenic_variant	29,655	intergenic_variant_3
1	102,100,366	A	G	0		false	0.010945	18.886	dELS_flank	103,439	dELS_flank_4
1	104,153,378	A	G	0		false	0.29085	122.32	non_coding_transcript_exon_variant	402,971	non_coding_transcript_exon_variant_7
1	107,148,301	A	G	0		false	0.078137	55.178	5_prime_UTR_variant	292	5_prime_UTR_variant_5
1	107,524,610	G	A	0		false	0.18845	31.826	dELS	163,893	dELS_29
1	107,888,754	G	A	0		false	0.075193	45.766	intron_variant	76,098	intron_variant_10
1	108,113,588	C	T	0.003783		false	0.44941	132.93	intergenic_variant	79,229	intergenic_variant_6
1	108,113,616	C	A	0.003784		false	0.44929	132.9	intergenic_variant	79,201	intergenic_variant_6
1	108,113,628	C	G	0.00374		false	0.44939	132.94	intergenic_variant	79,189	intergenic_variant_6
1	108,116,216	G	T	0.004895		false	0.45023	133.25	intergenic_variant	76,601	intergenic_variant_6
1	108,932,826	T	C	0		false	0.045118	22.812	3_prime_UTR_variant	1,903	3_prime_UTR_variant_3
1	108,951,034	T	C	0		false	0.009615	13.353	5_prime_UTR_variant	585	5_prime_UTR_variant_3
1	109,059,650	G	A	0		false	0.38266	88.808	intergenic_variant	16,352	intergenic_variant_0
1	109,134,687	G	A	0.002245		false	0.091879	69.699	dELS	20,531	dELS_14
1	109,240,933	A	G	0		false	0.47019	45.843	dELS	8,605	dELS_24
1	109,274,968	G	T	0.997447	ApoB,LDLC	true	0.22152	59.895	3_prime_UTR_variant	6,710	3_prime_UTR_variant_1
1	109,392,742	A	G	0		false	0.000018	40.585	5_prime_UTR_variant	245	5_prime_UTR_variant_1
1	109,620,454	A	G	0		false	0.47541	75.259	PLS	153	PLS_4
1	109,656,995	T	A	0		false	0.010677	9.0117	5_prime_UTR_variant	604	5_prime_UTR_variant_3
1	109,688,145	G	A	0.001453		false	0.07395	31.115	5_prime_UTR_variant	286	5_prime_UTR_variant_5
1	109,720,464	C	A	0.000576		false	0.42223	64.015	intron_variant	6,730	intron_variant_1
1	109,928,142	G	A	1	AST,Alb,Lym,Mono,Plt,TP,WBC,eGFRcys	true	0.14939	27.532	dELS	17,155	dELS_16
1	109,992,292	C	A	0.00095		false	0.35526	81.152	dELS_flank	7,526	dELS_flank_8
1	110,131,835	A	G	0		false	0.23139	22.517	dELS	18,658	dELS_6
1	110,187,540	C	G	0		false	0.45521	37.418	dELS	22,773	dELS_21
1	110,605,794	G	C	0		false	0.070699	32.372	5_prime_UTR_variant	214	5_prime_UTR_variant_5
1	110,874,477	A	C	0		false	0.26412	147.17	pELS	1,328	pELS_0
1	110,874,824	T	G	0		false	0.26408	147.07	pELS	1,675	pELS_0
1	111,197,723	C	G	1	HbA1c,Plt	true	0.22484	29.677	non_coding_transcript_exon_variant	2,922	non_coding_transcript_exon_variant_4
1	111,205,506	C	T	0		false	0.18919	43.437	pELS	1,096	pELS_4
1	111,236,524	A	C	0		false	0.42692	97.951	dELS	1,507	dELS_26

Subsets and Splits