MedVersa_Internal / environment.yml
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name: medversa
channels:
- pytorch
- nvidia
- conda-forge
- anaconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20211102.0=h27087fc_1
- aiosignal=1.3.1=pyhd8ed1ab_0
- arrow-cpp=11.0.0=py39h613000e_0
- asttokens=2.2.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=ha1a6a79_0
- aws-c-common=0.4.57=he6710b0_1
- aws-c-event-stream=0.1.6=h2531618_5
- aws-checksums=0.1.9=he6710b0_0
- aws-sdk-cpp=1.8.185=hce553d0_0
- blas=1.0=mkl
- boost-cpp=1.70.0=ha2d47e9_1
- bottleneck=1.3.5=py39h7deecbd_0
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2023.12.12=h06a4308_0
- cairo=1.16.0=hb05425b_5
- certifi=2023.11.17=py39h06a4308_0
- cffi=1.15.1=py39h5eee18b_3
- colorama=0.4.6=pyhd8ed1ab_0
- cryptography=41.0.2=py39h774aba0_0
- cuda-cudart=11.7.99=0
- cuda-cupti=11.7.101=0
- cuda-libraries=11.7.1=0
- cuda-nvrtc=11.7.99=0
- cuda-nvtx=11.7.91=0
- cuda-runtime=11.7.1=0
- cudatoolkit=11.7.0=hd8887f6_10
- curl=7.87.0=h5eee18b_0
- dataclasses=0.8=pyhc8e2a94_3
- datasets=2.14.3=pyhd8ed1ab_0
- dill=0.3.7=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.4.9=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.9.0=py39h06a4308_0
- flit-core=3.6.0=pyhd3eb1b0_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.1=h52c9d5c_1
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- freetype=2.12.1=h4a9f257_0
- fribidi=1.0.10=h7b6447c_0
- frozenlist=1.3.3=py39h5eee18b_0
- gdbm=1.18=hd4cb3f1_4
- gdk-pixbuf=2.42.10=h5eee18b_0
- gettext=0.21.0=hf68c758_0
- gflags=2.2.2=he1b5a44_1004
- giflib=5.2.1=h5eee18b_3
- git=2.34.1=pl5262hc120c5b_0
- glib=2.69.1=he621ea3_2
- glog=0.5.0=h48cff8f_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- gobject-introspection=1.72.0=py39hbb6d50b_2
- graphite2=1.3.14=h295c915_1
- graphviz=2.50.0=h1b29801_1
- grpc-cpp=1.46.1=h33aed49_1
- gtk2=2.24.33=h73c1081_2
- gts=0.7.6=hb67d8dd_3
- harfbuzz=4.3.0=hf52aaf7_1
- huggingface_hub=0.16.4=pyhd8ed1ab_0
- icu=58.2=he6710b0_3
- idna=3.4=py39h06a4308_0
- importlib_metadata=6.8.0=hd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- jinja2=3.1.2=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- krb5=1.19.4=h568e23c_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libbrotlicommon=1.0.9=h166bdaf_7
- libbrotlidec=1.0.9=h166bdaf_7
- libbrotlienc=1.0.9=h166bdaf_7
- libcublas=11.10.3.66=0
- libcufft=10.7.2.124=h4fbf590_0
- libcufile=1.7.1.12=0
- libcurand=10.3.3.129=0
- libcurl=7.87.0=h91b91d3_0
- libcusolver=11.4.0.1=0
- libcusparse=11.7.4.91=0
- libdeflate=1.17=h5eee18b_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h7f8727e_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h6a678d5_6
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1234567_1
- libgd=2.3.3=h6a678d5_3
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libnghttp2=1.46.0=hce63b2e_0
- libnpp=11.7.4.75=0
- libnvjpeg=11.8.0.2=0
- libpng=1.6.39=h5eee18b_0
- libprotobuf=3.20.3=he621ea3_0
- librsvg=2.54.4=h36cc946_2
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libthrift=0.15.0=he6d91bd_0
- libtiff=4.5.0=h6a678d5_2
- libtool=2.4.6=h6a678d5_1009
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.14=h74e7548_0
- lz4-c=1.9.4=h6a678d5_0
- mkl=2023.1.0=h6d00ec8_46342
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.6=py39h417a72b_1
- mkl_random=1.2.2=py39h417a72b_1
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py39h06a4308_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py39h06a4308_0
- ninja-base=1.10.2=hd09550d_5
- numexpr=2.8.4=py39hc78ab66_1
- numpy-base=1.25.0=py39hb5e798b_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=1.1.1w=h7f8727e_0
- orc=1.7.4=hb3bc3d3_1
- pango=1.50.7=h05da053_0
- pcre=8.45=h295c915_0
- pcre2=10.37=he7ceb23_1
- perl=5.34.0=h5eee18b_2
- pip=23.0.1=py39h06a4308_0
- pixman=0.40.0=h7f8727e_1
- poppler=0.81.0=h01f5e8b_2
- poppler-data=0.4.11=h06a4308_1
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=23.2.0=py39h06a4308_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.16=h7a1cb2a_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-devtools=0.11.0=pyhd8ed1ab_0
- python-graphviz=0.20.1=py39h06a4308_0
- python-xxhash=2.0.2=py39h5eee18b_1
- python_abi=3.9=2_cp39
- pytorch=2.0.1=py3.9_cuda11.7_cudnn8.5.0_0
- pytorch-cuda=11.7=h778d358_5
- pytorch-mutex=1.0=cuda
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_4
- re2=2022.04.01=h27087fc_0
- readline=8.2=h5eee18b_0
- sacremoses=0.0.53=pyhd8ed1ab_0
- setuptools=66.0.0=py39h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=h295c915_0
- sqlite=3.41.2=h5eee18b_0
- sympy=1.11.1=py39h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.12=h1ccaba5_0
- tmux=3.2a=h385fc29_0
- tokenizers=0.13.2=py39he7d60b5_1
- torchtriton=2.0.0=py39
- transformers=4.28.1=pyhd8ed1ab_0
- typing_extensions=4.4.0=py39h06a4308_0
- utf8proc=2.6.1=h27cfd23_0
- wheel=0.38.4=py39h06a4308_0
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- absl-py==2.0.0
- accelerate==0.16.0
- aiofiles==23.1.0
- aiohttp==3.8.4
- albumentations==1.3.1
- altair==4.2.2
- antlr4-python3-runtime==4.9.3
- anyio==3.6.2
- appdirs==1.4.4
- apptools==5.2.1
- argon2-cffi==21.3.0
- argon2-cffi-bindings==21.2.0
- argparse==1.4.0
- arrow==1.2.3
- attrs==22.2.0
- backcall==0.2.0
- batchgenerators==0.25
- beautifulsoup4==4.12.2
- bitsandbytes==0.37.0
- bitsandbytes-cuda117==0.26.0.post2
- bleach==6.0.0
- blis==0.7.9
- braceexpand==0.1.7
- brotli==1.1.0
- cachetools==5.3.1
- catalogue==2.0.8
- cchardet==2.1.7
- chardet==5.1.0
- charset-normalizer==3.1.0
- click==8.1.3
- cmake==3.26.3
- comm==0.1.3
- commonmark==0.9.1
- conda-pack==0.6.0
- confection==0.0.4
- configobj==5.0.8
- conllu==4.5.3
- contourpy==1.0.7
- cpufeature==0.2.1
- cycler==0.11.0
- cymem==2.0.7
- debugpy==1.6.7
- decorator==5.1.1
- decord==0.6.0
- defusedxml==0.7.1
- deprecated==1.2.14
- docker-pycreds==0.4.0
- efficientnet-pytorch==0.7.1
- einops==0.6.1
- einops-exts==0.0.4
- entrypoints==0.4
- envisage==7.0.3
- et-xmlfile==1.1.0
- exceptiongroup==1.2.0
- fairscale==0.4.13
- fastapi==0.95.1
- fastjsonschema==2.16.3
- ffmpy==0.3.0
- fonttools==4.38.0
- fqdn==1.5.1
- fschat==0.1.10
- fsspec==2023.4.0
- ftfy==6.1.1
- future==0.18.3
- gitdb==4.0.10
- gitpython==3.1.31
- google-auth==2.23.3
- google-auth-oauthlib==1.0.0
- gradio==3.23.0
- gradio-client==0.0.8
- grpcio==1.59.0
- h11==0.14.0
- h5py==3.9.0
- hjson==3.1.0
- httpcore==0.17.0
- httpx==0.24.0
- humanize==4.8.0
- hyperlink==21.0.0
- imageio==2.33.0
- importlib-metadata==6.6.0
- importlib-resources==5.12.0
- inflate64==1.0.0
- iniconfig==2.0.0
- iopath==0.1.10
- ipdb==0.13.13
- ipykernel==6.22.0
- ipython==8.12.0
- ipython-genutils==0.2.0
- isoduration==20.11.0
- jedi==0.18.2
- joblib==1.2.0
- jsonpointer==2.3
- jsonschema==4.17.3
- jupyter-client==8.2.0
- jupyter-core==5.3.0
- jupyter-events==0.6.3
- jupyter-server==2.5.0
- jupyter-server-terminals==0.4.4
- jupyterlab-pygments==0.2.2
- kiwisolver==1.4.4
- langcodes==3.3.0
- lazy-loader==0.3
- linecache2==1.0.0
- linkify-it-py==2.0.0
- lit==16.0.2
- llvmlite==0.39.1
- markdown==3.5
- markdown-it-py==2.2.0
- markdown2==2.4.8
- markupsafe==2.1.2
- matplotlib==3.7.0
- matplotlib-inline==0.1.6
- mdit-py-plugins==0.3.3
- mdurl==0.1.2
- mistune==2.0.5
- multidict==6.0.4
- multiprocess==0.70.15
- multivolumefile==0.2.3
- munch==4.0.0
- murmurhash==1.0.9
- mypy-extensions==1.0.0
- nbclassic==0.5.6
- nbclient==0.7.4
- nbconvert==7.3.1
- nbformat==5.8.0
- nest-asyncio==1.5.6
- nh3==0.2.11
- nibabel==5.1.0
- ninja==1.11.1
- nltk==3.8.1
- nmslib==2.1.1
- notebook==6.5.4
- notebook-shim==0.2.3
- numba==0.56.4
- numpy==1.23.5
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-cupti-cu11==11.7.101
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- nvidia-cufft-cu11==10.9.0.58
- nvidia-curand-cu11==10.2.10.91
- nvidia-cusolver-cu11==11.4.0.1
- nvidia-cusparse-cu11==11.7.4.91
- nvidia-nccl-cu11==2.14.3
- nvidia-nvtx-cu11==11.7.91
- oauthlib==3.2.2
- omegaconf==2.3.0
- open-clip-torch==2.20.0
- openai==0.27.0
- opencv-python==4.7.0.72
- opencv-python-headless==4.8.0.74
- openpyxl==3.1.2
- orjson==3.8.11
- packaging==23.0
- pandas==2.0.1
- pandocfilters==1.5.0
- parso==0.8.3
- pathtools==0.1.2
- pathy==0.10.1
- peft==0.2.0
- pexpect==4.8.0
- pickleshare==0.7.5
- pillow==9.5.0
- platformdirs==3.5.0
- pluggy==1.3.0
- portalocker==2.7.0
- preshed==3.0.8
- pretrainedmodels==0.7.4
- prometheus-client==0.16.0
- prompt-toolkit==3.0.38
- protobuf==3.20.3
- psutil==5.9.4
- ptyprocess==0.7.0
- pure-eval==0.2.2
- py-cpuinfo==9.0.0
- py-rsync==0.0.1a0.dev0
- py7zr==0.20.8
- pyarrow==11.0.0
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pybcj==1.0.2
- pybind11==2.6.1
- pycocoevalcap==1.2
- pycocotools==2.0.6
- pycryptodomex==3.19.1
- pydantic==1.10.7
- pydub==0.25.1
- pyface==8.0.0
- pygments==2.15.1
- pynndescent==0.5.10
- pyparsing==3.0.9
- pyppmd==1.1.0
- pyqt5==5.15.10
- pyqt5-qt5==5.15.2
- pyqt5-sip==12.13.0
- pyrsistent==0.19.3
- pysbd==0.3.4
- pytest==7.4.3
- python-json-logger==2.0.7
- python-multipart==0.0.6
- python-polylabel==0.6
- python-rsync==0.1.0
- pyzmq==25.0.2
- pyzstd==0.15.9
- qudida==0.0.4
- regex==2022.10.31
- requests==2.29.0
- requests-oauthlib==1.3.1
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- rich==12.6.0
- rsa==4.9
- safetensors==0.3.1
- scikit-image==0.22.0
- scipy==1.10.1
- scispacy==0.5.2
- segmentation-models-pytorch==0.3.3
- semantic-version==2.10.0
- send2trash==1.8.2
- sentence-transformers==2.2.2
- sentencepiece==0.1.98
- sentry-sdk==1.21.0
- setproctitle==1.3.2
- shapely==2.0.2
- shellingham==1.5.4
- shortuuid==1.0.11
- simpleitk==2.2.1
- smart-open==6.3.0
- smmap==5.0.0
- sniffio==1.3.0
- soupsieve==2.4.1
- spacy==3.4.4
- spacy-legacy==3.0.12
- spacy-loggers==1.0.4
- srsly==2.4.6
- stack-data==0.6.2
- starlette==0.26.1
- surface-distance-based-measures==0.1
- svgwrite==1.4.3
- swig==4.1.1
- tenacity==8.2.2
- tensorboard==2.14.1
- tensorboard-data-server==0.7.1
- terminado==0.17.1
- texttable==1.7.0
- thinc==8.1.9
- threadpoolctl==3.1.0
- tifffile==2023.9.26
- timm==0.9.2
- tinycss2==1.2.1
- tomli==2.0.1
- toolz==0.12.0
- torchio==0.19.2
- torchvision==0.15.2
- tornado==6.3.1
- tqdm==4.64.1
- traceback2==1.4.0
- traitlets==5.9.0
- traits==6.4.3
- traitsui==8.0.0
- triton==2.0.0
- typer==0.7.0
- typing-extensions==4.5.0
- typing-inspect==0.8.0
- tzdata==2023.3
- uc-micro-py==1.0.1
- umap-learn==0.5.3
- unittest2==1.1.0
- unzip==1.0.0
- uri-template==1.2.0
- urllib3==1.26.15
- uvicorn==0.22.0
- vtk==9.3.0
- wandb==0.15.0
- wasabi==0.10.1
- wavedrom==2.0.3.post3
- wcwidth==0.2.6
- webcolors==1.13
- webdataset==0.2.48
- webencodings==0.5.1
- websocket-client==1.5.1
- websockets==11.0.2
- werkzeug==3.0.0
- wrapt==1.16.0
- xxhash==3.3.0
- yarl==1.8.2
- zipp==3.14.0
prefix: /home/zhouhy/anaconda3/envs/medversa