first commit

FORECasT-BE

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+Subproject commit b5ac2900e994c588b0cb349876743e48230b90c6

SNPS.csv

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+,GENE:SNP
+0,HRNR rs147288664
+1,SLC50A1 rs12726330
+2,GBA rs76763715
+3,GBA rs75548401
+4,LMNA rs71630614
+5, rs4575098
+6, rs12118655
+7, rs7532422
+8,CR1L rs7537669
+9,NCK2 rs143080277
+10,BIN1 rs55636820
+11,BIN1 rs1060743
+12,BIN1 rs11693422
+13,BIN1 rs11694743
+14,BIN1 rs10929006
+15,BIN1 rs4663096
+16, rs13032148
+17,LOC105373605 rs7594230
+18,LOC105373605 rs58682665
+19,LOC105373605 rs35968837
+20,LOC105373605 rs4663105
+21,TMEM163 rs57891859
+22,STK39 rs2390669
+23,INPP5D rs6705834
+24, rs4488803
+25, rs73177394
+26,MCCC1 rs111716486
+27,GAK rs45486093
+28,GAK rs3775121
+29,TMEM175 rs6599388
+30,TMEM175 rs6599389
+31,TMEM175 rs3733344
+32,TMEM175 rs34311866
+33, rs4690229
+34,SLC26A1 rs17783233
+35, rs4373155
+36,BST1 rs35519415
+37,BST1 rs9291637
+38,SCARB2 rs12640185
+39, rs7654472
+40, rs6811535
+41,LOC105377329 rs1430961
+42,LOC105377329 rs72657707
+43,LOC105377329 rs114088559
+44,LOC105377329 rs3933594
+45,SNCA rs356162
+46,SNCA rs72503734
+47,SNCA rs3775434
+48,SNCA rs2737029
+49, rs6841352
+50,MMRN1 rs10516853
+51,CCSER1 rs183161418
+52, rs10052649
+53,SMIM15-AS1 rs10514906
+54, rs1967688
+55, rs1980493
+56, rs3806157
+57, rs9268544
+58, rs9268840
+59, rs482044
+60, rs149839148
+61, rs33915496
+62, rs510205
+63, rs9275111
+64, rs2858331
+65, rs3957148
+66,LOC102725019 rs9275614
+67, rs79485747
+68,LOC101929555 rs143202663
+69, rs143332484
+70, rs13207334
+71, rs9395259
+72,CD2AP rs6931011
+73,LOC101927890 rs1637190
+74,AZGP1 rs1987580
+75,GPC2 rs3735242
+76,CASTOR3 rs7782051
+77,PILRA rs2906657
+78, rs3935067
+79,EPHA1-AS1 rs11767557
+80,LOC105379297 rs620490
+81,PTK2B rs755951
+82,CHRNA2 rs2565048
+83,EPHX2 rs7341557
+84,EPHX2 rs2640724
+85,EPHX2 rs7831810
+86, rs9331950
+87,CLU rs4732729
+88,SCARA3 rs485902
+89,SCARA3 rs35112405
+90,EPPK1 rs112136718
+91,MOB3B rs148703839
+92,MOB3B rs78752429
+93,MOB3B rs12552327
+94,MOB3B rs4879515
+95,MOB3B rs139185008
+96,MOB3B rs2484314
+97,LOC107987057 rs147599399
+98,C9orf72 rs17696570
+99,C9orf72 rs3849944
+100,C9orf72 rs10812619
+101, rs11795154
+102, rs34555425
+103, rs7854467
+104, rs117204439
+105, rs7912495
+106,CCDC6 rs1171832
+107, rs188789342
+108,INPP5F rs117896735
+109,CYP2R1 rs202122669
+110,SPI1 rs11039212
+111,SPI1 rs10769263
+112,MS4A3 rs1286170
+113, rs580064
+114,MS4A6A rs55661415
+115,MS4A4E rs652303
+116,MS4A4A rs2044981
+117,MS4A4A rs55777218
+118, rs7945487
+119, rs4944549
+120, rs572979
+121, rs67598967
+122, rs7113976
+123, rs11603136
+124,SORL1 rs11218343
+125,IGSF9B rs11223616
+126,IGSF9B rs10444323
+127,IGSF9B rs564123
+128,C12orf40 rs539604877
+129,SLC2A13 rs893136227
+130,LRRK2 rs1491942
+131,LRRK2 rs28903073
+132,LRRK2 rs34637584
+133,MUC19 rs75505347
+134,CNTN1 rs1002038473
+135,PDZRN4 rs764179564
+136,SDR9C7 rs117027576
+137,KIF5A rs113247976
+138, rs116900480
+139,TBK1 rs41292019
+140, rs73124200
+141,PSMC6 rs3783448
+142,LOC105370500 rs12589020
+143,FERMT2 rs147767029
+144,SLC24A4 rs61977311
+145,SLC24A4 rs12590654
+146,USP50 rs3098199
+147, rs7168776
+148,APH1B rs117618017
+149,CTF1 rs11862962
+150,FBXL19 rs8050588
+151,FBXL19 rs12917722
+152,KAT8 rs28725459
+153, rs7502862
+154, rs61572747
+155,LINC02210-CRHR1 rs1724425
+156,LINC02210-CRHR1 rs7207400
+157,LINC02210-CRHR1 rs34186148
+158,MAPT-AS1 rs3935637
+159,MAPT-AS1 rs9898399
+160,MAPT rs713522
+161,MAPT rs8067056
+162,KANSL1 rs7225002
+163, rs916888
+164,RIT2 rs4588066
+165,CNN2 rs1141534
+166,ABCA7 rs3764645
+167,ABCA7 rs3752231
+168,ABCA7 rs72973584
+169,UNC13A rs12975883
+170,CEACAM20 rs80257887
+171,CEACAM22P rs75161053
+172, rs144908353
+173,IGSF23 rs112027066
+174, rs203709
+175, rs35385129
+176, rs111780744
+177, rs2289495
+178,CEACAM16-AS1 rs62120565
+179,CEACAM16-AS1 rs112952132
+180,CEACAM16-AS1 rs2965162
+181, rs2965163
+182, rs2965164
+183,CEACAM16-AS1 rs111278137
+184,CEACAM16-AS1 rs4600571
+185,CEACAM16-AS1 rs73037426
+186,CEACAM16-AS1 rs111740474
+187,CEACAM16-AS1 rs2965109
+188,CEACAM16-AS1 rs150820726
+189, rs80307900
+190, rs2965102
+191, rs200046586
+192,BCL3 rs12459810
+193,BCL3 rs2965169
+194,BCL3 rs10401176
+195,BCL3 rs8103315
+196,BCL3 rs111677968
+197,BCL3 rs62117205
+198, rs140414737
+199,CBLC rs112450640
+200,CBLC rs2889414
+201,CBLC rs10419669
+202,CBLC rs28534944
+203,CBLC rs139576276
+204,CBLC rs148933445
+205,CBLC rs2965112
+206,CBLC rs111794050
+207,BCAM rs140824606
+208,BCAM rs1135062
+209,BCAM rs28399637
+210, rs34978331
+211, rs56394238
+212, rs35741123
+213, rs1466435
+214, rs55840414
+215, rs111371860
+216,NECTIN2 rs41289512
+217,NECTIN2 rs7255063
+218,NECTIN2 rs10421035
+219,NECTIN2 rs35396326
+220,NECTIN2 rs4803765
+221,NECTIN2 rs365653
+222,NECTIN2 rs417193
+223,NECTIN2 rs12978931
+224,NECTIN2 rs138607350
+225,NECTIN2 rs183427010
+226,NECTIN2 rs112422902
+227,NECTIN2 rs41290100
+228,NECTIN2 rs41290102
+229,NECTIN2 rs71352236
+230,NECTIN2 rs34278513
+231,NECTIN2 rs387976
+232,NECTIN2 rs73050293
+233,NECTIN2 rs11668861
+234,NECTIN2 rs41290120
+235,NECTIN2 rs11673139
+236,NECTIN2 rs113743631
+237,NECTIN2 rs79701229
+238,NECTIN2 rs144261139
+239,NECTIN2 rs283813
+240,TOMM40 rs76692773
+241,TOMM40 rs59007384
+242,TOMM40 rs35568738
+243,TOMM40 rs117264457
+244,TOMM40 rs1038026
+245,TOMM40 rs10119
+246,APOE rs449647
+247,APOE rs769446
+248,APOE rs7412
+249,APOE rs429358
+250,APOE rs537741299
+251, rs75627662
+252,APOC1 rs72654437
+253,APOC1 rs59325138
+254,APOC1 rs72654445
+255,APOC1 rs12691088
+256,APOC1 rs3925681
+257,APOC1 rs150966173
+258,APOC1 rs1064725
+259, rs144311893
+260, rs111789331
+261, rs139136389
+262, rs4803771
+263, rs117664574
+264,APOC1P1 rs60049679
+265,APOC1P1 rs73033507
+266, rs7260330
+267, rs7254133
+268, rs141441332
+269, rs4263041
+270,CLPTM1 rs12983572
+271,CLPTM1 rs8102895
+272,CLPTM1 rs2239375
+273,CLPTM1 rs75178253
+274,CLPTM1 rs145639166
+275,CLPTM1 rs73558179
+276,CLPTM1 rs146390218
+277,CLPTM1 rs145729706
+278,CLPTM1 rs117261169
+279, rs12459272
+280,RELB rs35577563
+281,RELB rs117612135
+282,RELB rs874743
+283, rs145887105
+284,RELB rs35912475
+285,RELB rs4803791
+286,RELB rs142380271
+287,RELB rs34583389
+288,RELB rs186313460
+289, rs34827707
+290,CLASRP rs76856627
+291,CLASRP rs112481437
+292,CLASRP rs147188206
+293,CLASRP rs143161810
+294, rs139995984
+295,GEMIN7 rs7251911
+296,GEMIN7 rs8100183
+297, rs118062675
+298,PPP1R37 rs12461065
+299,PPP1R37 rs76271385
+300,PPP1R37 rs145903417
+301,PPP1R37 rs79018068
+302,PPP1R37 rs75463276
+303,PPP1R37 rs146723120
+304,PPP1R37 rs78073763
+305, rs1005451
+306,TRAPPC6A rs192775394
+307,TRAPPC6A rs149553138
+308,TRAPPC6A rs76971643
+309,BLOC1S3 rs59839536
+310,BLOC1S3 rs12460985
+311,BLOC1S3 rs62118471
+312,BLOC1S3 rs111243475
+313,BLOC1S3 rs149495476
+314,BLOC1S3 rs73566243
+315,BLOC1S3 rs117783785
+316,BLOC1S3 rs2627642
+317, rs185181700
+318, rs620807
+319, rs10415983
+320,EXOC3L2 rs11667509
+321,EXOC3L2 rs10415392
+322,EXOC3L2 rs12461144
+323,EXOC3L2 rs346758
+324,EXOC3L2 rs112759099
+325,EXOC3L2 rs346751
+326,EXOC3L2 rs346750
+327,EXOC3L2 rs11673093
+328,MARK4 rs345421
+329,MARK4 rs183442275
+330,CKM rs144645090
+331, rs12973246
+332,KLC3 rs77988534
+333,ERCC1 rs10423015
+334,CD33 rs3865444
+335,CASS4 rs6127744
+336, rs2830489
+337,CFAP410 rs75087725

app.py

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+#from turtle import shape
+import streamlit as st
+#from st_keyup import st_keyup
+import pandas as pd
+import numpy as np
+from st_aggrid import AgGrid, GridOptionsBuilder,GridUpdateMode,DataReturnMode
+
+import sys
+import subprocess
+
+import subprocess as sp
+
+from subprocess import PIPE, run
+
+import time
+import os
+from PIL import Image
+
+st.set_page_config(layout="wide") 
+st.markdown(
+    """
+<style>
+.streamlit-expanderHeader {
+    font-size: x-large;
+}
+</style>
+""",
+    unsafe_allow_html=True,
+)
+
+latext1 = r'''
+$$ 
+f(s_j) = \frac{1}{1+exp(-g(s_j))} \\
+g(s_j) = int + \sum_{i} w_{ij} \\
+where f(s_j) \epsilon \ [0,1] \\
+'''            
+latext2 = r'''
+$$ 
+Specificity (g) = \frac{1}{1+\sum_{o\epsilon OffTargets(g)} CFD(o,g)} \\
+'''            
+
+gene_rank = r'''
+$$ 
+Score(g) = min[Specificity(g), Specificity(g'), 1.25*CuttingEfficiency(g)] \\
+'''            
+
+sgran_target_score = r'''
+$$ 
+score = \sum_{off\_targets}[\frac{log_{10}(dist) + score_{off\_target}}{total\_off\_targets}] - total\_off\_targets   - (2) \\
+'''            
+
+off_target = r'''
+$$ 
+score_{Off-target} = \sum_{mismatch} 1.2^{pos}    -  (1)\\
+'''            
+
+#for inline python code generation
+class CodeGenerator:
+    def __init__(self, indentation='\t'):
+        self.indentation = indentation
+        self.level = 0
+        self.code = ''
+
+    def indent(self):
+        self.level += 1
+
+    def dedent(self):
+        if self.level > 0:
+            self.level -= 1
+
+    def __add__(self, value):
+        temp = CodeGenerator(indentation=self.indentation)
+        temp.level = self.level
+        temp.code = str(self) + ''.join([self.indentation for i in range(0, self.level)]) + str(value)
+        return temp
+
+    def __str__(self):
+        return str(self.code)
+
+  
+def ForeCastBE(target_seq,method,select_method):
+    Editing_Efficiency = st.radio(
+    "Base Editing_Efficiency Calculator (FORECasT-BE)",
+    ('No', 'Yes'),horizontal=True)
+
+    if Editing_Efficiency=='Yes':
+        Editor = st.radio(
+        "Editor",
+        ('ABE', 'CBE'),horizontal=True)
+
+        if len(variant_spl)>1:
+            fname=variant_spl[1]+method+select_method+'.fasta'
+            res_fname=fname+"_"+Editor+"_"+fname+'1.csv'
+
+            #snpid=variant_spl[1]
+        else:
+            fname=variant_spl[0]+method+select_method+'.fasta'
+            res_fname=fname+"_"+Editor+"_"+fname+'.csv'
+            
+            #snpid=variant_spl[0]
+        f = open(fname, "w")
+        for i in range(len(target_seq)):
+            f.write('>'+target_seq[i]+'\n')
+            f.write(target_seq[i]+'\n')
+        f.close()    
+
+        with st.form(key='columns_in_form'):
+            #c1, c2, c3 = st.columns(3)
+            c2, c3 = st.columns(2)
+            #with c1:
+            #    inp_seq=st.text_input("Please Enter Target DNA sequence (20nt)",value='TGGAGTAGGGGCAAATTATT',disabled=False)
+            with c2:
+                mean1=st.text_input("Mean Editing Efficiency (None or 0-1)",value='None',disabled=False)
+                
+            with c3:
+                std1=st.text_input("Standard deviation of editing efficiency (None or 0-1)",value='None',disabled=False)
+            st.form_submit_button(label = 'Update')
+
+        if st.button('Calculate'):
+            b = CodeGenerator()
+            b +='import forecast_be\n'
+            b+="forecast_be.predict_batch_fasta("+"'"+fname+"'"+",editor="+"'"+Editor+"'"+",output_path="+"'"+res_fname+"'"+",mean="+mean1+",std="+std1+")\n"
+            
+            f = open("pytest1.py", "w")
+            f.write(str(b))
+            f.close()
+            command2 = 'python '+ "pytest1.py"
+            #result = run(command2, stdout=PIPE, stderr=PIPE, universal_newlines=True, shell=True)
+            run(command2, stdout=PIPE, stderr=PIPE, universal_newlines=True, shell=True)
+            Forecast_BE_Res=pd.read_csv(res_fname)
+            #st.write(Forecast_BE_Res)
+            Forecast_BE_Res.dropna(axis=1, how='all',inplace=True)
+            if Forecast_BE_Res.shape[1]>1: # and mean1=='None' and std1=='None':
+                display_ForeCast_BE_res(Forecast_BE_Res,method,variant_spl)
+                #AgGrid(Forecast_BE_Res.dropna(axis=1, how='all'))
+            #elif Forecast_BE_Res.shape[1]>3:
+            #    display_ForeCast_BE_res(Forecast_BE_Res,method,variant_spl)
+                #AgGrid(Forecast_BE_Res.dropna(axis=1, how='all'))
+            else:
+                st.markdown('**Editing Efficiency Calculator did not retrun any results**')
+                
+                
+            #st.write(result.stdout)
+            #st.write(result.stderr)
+        if os.path.exists(fname):
+            os.remove(fname)
+        if os.path.exists(res_fname):
+            os.remove(res_fname)
+
+
+def transform(df,str):
+    # Select columns
+    #cols = st.multiselect('Please select columns to save current Table as csv file', 
+    cols = st.multiselect(str, 
+    df.columns.tolist(),
+    df.columns.tolist()
+    )
+    df = df[cols]
+    return df
+@st.cache
+def convert_df1(df):
+    return df.to_csv(index=False).encode('utf-8')
+
+def convert_df(df):
+    return df.to_csv().encode('utf-8')
+
+#BE-DICT
+def BEDICT(method,select_method):
+    #BE-DICT
+    #if select_method == "BE-DICT":
+    #tab1, tab2 = st.tabs(["Results", "Efficiency Calculators"])
+
+    #with tab1:
+    st.header("BE-DICT: "+method)
+    expander = st.expander("Summary")
+    #expander.markdown("**Summary**")
+    expander.markdown("BE-DICT predicts base editing outcomes for **4 commonly used base editors (BEs)** by employing an **attention-based deep learning [algorithm](https://www.nature.com/articles/s41467-021-25375-z)** trained on high-throughput target library (of 28,394 target sequences) screens. It **predicts the editing of a target and surrounding bystander nucleotides** for the following ABEs and CBEs.")
+    expander.write(
+    """
+    - Adenine Base Editors (ABEs)
+        - Based on Adenine deaminase ecTad7.10 **(ABEmax)** and ecTadA-8e **(ABE8e)**
+    - Cytosine Base Editors (CBEs)
+        - Based on Cytosine deaminase rAPOPEC1 **(CBE4max)** and **Target-AID**
+    """
+    )
+    expander.markdown("Most base editors convert target bases in a ~5- nucleotide region within the protospacer target sequence and undesired **bystander** editing of additional C or A bases in the editing window are common. All results shown here are based on bystander models for each ABE and CBE.")
+    
+    expander1 = st.expander("How it works")
+    expander1.markdown(
+        """
+        BE-DICT utilizes comprehensive base editing data (to train and test) generated in the ABE and CBE target library screens (8,558 for ABEmax; 9,534 for CBE4max; 3,416 for ABE8e; 10,177 for Target-AID) for designing and training a machine learning model capable of predicting base editing outcomes at any given target site. The model has three main blocks: 
+        -   **Embedding block** that embeds both the nucleotide’s and its correponding position from one-hot encoded representation to a dense vector representation.
+        -   **Encoder block** that contains:
+            -   A self-attention layer (with multi-head support).
+            -   Layer normalization & residual connections. 
+            -   Feed-forward network.
+        -   **Output block** that contains:
+            -   A position attention layer 
+            -   A classifier layer.
+        """
+        )
+    expander1.markdown('BE-DICT predicts base editing efficiencies with high accuracy from previously published experiments as well as 18/16 separate endogenous genomic loci for ABEmax/CBE4max and ABE8e/Target-AID.')
+    expander1.markdown('Currently, BE-DICT is trained on datasets for ABEmax, CBE4- max, ABE8e, and Target-AID.' )
+    expander2 = st.expander("References")
+
+    expander2.write("[BE-DICT Web App](http://130.60.24.130/page-set?actionID=5f8c494b8c854d0029ffa9d3)")
+    expander2.write("[BE-DICT Paper](https://www.nature.com/articles/s41467-021-25375-z)")
+    
+    #expander3 = st.expander("Tool options")
+    
+    
+    
+    expander3 = st.expander("Tool Options: All you can do with this tool")   
+    
+    #expander3.markdown('Options')
+    #expander3.markdown(tips,unsafe_allow_html=True)
+    expander3.markdown('This tool uses an **attention based deep learning framework** to predict base editing outcomes for **4 popular** base editors: ABEMax, ABE8e, CBE4max and Target-AID.')
+    
+    
+    expander3.markdown(
+        """
+        Input: 
+        -   2-column csv: 
+            -   col1=Inp_seq
+            -   col2=seq_id
+        where **Inp_seq is a 20 bp** target sequence and seq_id is an identification.
+        """
+        )
+    expander3.markdown(
+        """
+        Output: 
+        -   5 column csv file
+            -   Columns of interest: 
+                -   Inp_seq: 
+                -   Outp_seq:
+                -   Pred_score: Higher is better
+    """
+    )
+    #expander3.markdown('**Details about Score column**')
+    #expander3.markdown('BE-DICT models (using multi-head self-attention inspired by the Transformer encoder architecture) and interprets dependencies of base editing on the protospacer target sequence')    
+    # expander3.write(
+    # """
+    # - It takes a sequence of nucleotides of the protospacer as input and computes the probability of editing for each target nucleotide as output
+    # - assigns a weight (attention-score) to each base within the protospacer
+    # - The output is a probability score, reflecting the likelihood (between 0 and 1) with which a target base will be edited (C-to-T or A-to-G). 
+    # """
+    # )
+    
+    
+    expander3.markdown("**Batch mode** can be run from [here](http://130.60.24.130/page?actionID=607552549609a200293b663f)")
+
+    expander4 = st.expander("Scoring")
+    expander4.markdown(
+        """
+        Editing efficiency of a base editor depends on: 
+        - Consensus sequence preference of the deaminase.
+        - Binding efficiency of the sgRNA to the protospacer.
+        - Undesired ‘bystander’ editing of additional C or A bases in the editing window, among other factors.
+        """
+    )
+    expander4.markdown("\n")
+    expander4.markdown(
+        """
+        BE-DICT uses an **attention-based machine learning [algorithm](https://www.nature.com/articles/s41467-021-25375-z) (an encoder–decoder architecture)** to predict base editing outcomes of commonly used **ABEs** and **CBEs**. 
+        - It takes protospacer sequence as input
+            - Assigns a weight (attention-score) to each base within the protospacer
+            - Computes the probability of editing for each target nucleotide as output            
+            - The output is a probability score, reflecting the likelihood (between 0 and 1) with which a target base will be edited (C-to-T or A-to-G). 
+        """
+        )
+    
+    #expander4.markdown('It assigns a weight (attention-score) to each base within the protospacer with regard to its influence on the editing outcome. The **output** is a probability score (between 0 and 1) with which a target base will be edited (C-to-T or A-to-G).')
+    expander4.markdown('BE- DICT implements **per-base (probability score whether a single base will be edited)** as well as **bystander (probabilities for all combinations of sequences with target-based and bystander transitions, as well as the probability of observing a wild-type sequence)** model.') 
+    #expander4.markdown('Bystander model: Multiple A or C nucleotides within the editing window can lead to (undesired) bystander base conversions. It takes a sequence of nucleotides of the protospacer as input, and com- putes the probability of the different output sequences (i.e. probabilities for all combinations of sequences with target-based and bystander transitions, as well as the probability of observing a wild-type sequence)')
+    st.markdown('**Please note that this tool only targets NGG PAM**')
+    st.markdown("**Please note:** *Only one of all possible alleles is used to generate this output.*")
+    st.markdown("**Also note that:** *All results shown here are based on bystander models for each ABE and CBE.*")
+    st.markdown(caution,unsafe_allow_html=True)
+    target_seq=display_res(method,',','rs_id',select_method)
+    if len(target_seq)>0 and target_seq[0]!=0:
+        ForeCastBE(target_seq ,method,select_method)
+
+#ChopChop
+def Chopchop(method,select_method):
+    st.header("Chopchop: "+method)
+    expander = st.expander("Summary")
+    
+    expander.markdown(
+        """
+        ChopChop is a versatile tool that identifies  single guide RNA (sgRNA) targets for CRISPR–Cas9 system for:
+        -   **DNA** 
+        -   **RNA** 
+        -   **Targeted enrichment of loci for long-read sequencing** 
+        for over **200 genomes** and **3 transcriptomes**. \n\n
+        It offers a wide range of selection of **CRISPR effectors** (Cas9, Cas9 Nickase, CasX, and Cas13), **Species**, and **Purpose** (knockout, knockdown, activation, repression, enrichment) alongside a variety of **Options** including selection of specific region, PAM sequences, various efficiency measures, primers, prediction of Cas9 repair outcomes etc.
+        """
+        )
+    
+
+    expander1 = st.expander("How it works")
+    expander1.markdown("""
+    CHOPCHOP accepts **input** in one of the following forms: 
+    -   Gene name
+    -   Genomic coordinates
+        -   **In batch mode, we used** a text file containing chr:start-end per line for each snp. Ex: chr1:152220450-152220451".
+    -   DNA sequence 
+    Based on the input provided, chopchop retrieves sequence (corresponding to gene name/coordinates) and scan it for all potential target (and off-target) sites (based on search requirement selected).  
+    **Each sgRNA** is then ranked according to: 
+    -   Number of off-targets in the genome
+    -   Number of mismatches lie within the off-targets. 
+    -   Ranked by: 
+        -   GC-content
+        -   Presence of a guanine (G) at position 20 in the sgRNA target site
+        -   Any target sites with the same score are then sorted by their position in the gene (with preference to 5′ positions).
+    **Output:** A tab separated text file  
+    - **Columns of interest**: 
+        -   Target sequence
+        -   Efficiency (**higher the better**)
+    Please note that not all options have Efficiency defined [Ref](https://chopchop.cbu.uib.no/instructions)
+        """
+    )
+
+    expander1.markdown("**Instructions to run Batch mode** can be found [here](https://bitbucket.org/valenlab/chopchop/src/master/)")
+    #expander1.markdown(tips,unsafe_allow_html=True)
+    
+    expander2 = st.expander("References")    
+    
+    expander2.write("[ChopChop Web App](https://chopchop.cbu.uib.no)")
+    expander2.write("[ChopChop Paper](https://academic.oup.com/nar/article/47/W1/W171/5491735)")
+    
+
+    expander3 = st.expander("Tool Options: All you can do with this tool")   
+    
+    expander3.write(
+    """
+    This tool offers sgRNA design for:
+    - **DNA using:** 
+        - CRISPR/Cas9 system for knockout, knockin, activation, repression and nanopore enrichment.
+        - CRISPR/Cpf1 or CasX system for knockout, activation, repression and nanopore enrichment.
+        - CRISPR/Cas9 nickase system for knockout and knockin.
+        - TALEN system for knockout.
+    - **RNA using:**
+        - CRISPR/Cas13 (C2C2) for knockdown.
+    **This tool also offers a variety of PAM sequences and other filtering options.** \n\n
+    **Scoring:** It offers ***2 off-target detection*** methods and ***7 efficiency scores*** to aid users in selecting optimal sgRNAs for their research.
+    """
+    )
+
+
+    
+    expander4 = st.expander("Scoring")
+    expander4.markdown('All CRISPR–Cas applications use an sgRNA to direct the CRISPR effector (Cas9 and its variants) protein to its target. In theory, CRISPR–Cas targeting only requires complementarity between the sgRNA and its DNA target. However, **efficient targeting** follows more complex factors including **1)** position of specific nucleotides in the target sequence, **2)** the accessibility of the target site, and **3)** the sequence of its flanking regions as well as specific design.')
+    expander4.markdown(
+        """
+        **Efficiency score:** *Efficiency* column displays normalized score between 0-1. Based on **Cas9 effector (Cas9/Cas9 nickase/CasX/Cpf1)** used, user can select an appropriate scoring algorithm from one of the following options.
+        -   **G20**: Prioritizes a guanine at position 20, just upstream of PAM.
+        -   Doench et al. 2014 - only for NGG PAM
+        -   Doench et al. 2016 - only for NGG PAM (default)
+        -   Chari et al. 2015 - only NGG and NNAGAAW PAM's in hg19 and mm10
+        -   Xu et al. 2015 - only for NGG PAM (but can be used for other PAMs)
+        -   Moreno-Mateos et al. 2015 - only for NGG PAM.
+        **Ranking:** Target sites are ranked according to: 
+        -   Efficiency score
+        -   Number of off-targets and whether they have mismatches
+        -   Existence of self-complementarity regions longer than 3 nt. The number indicates how many regions of self-complementarity are predicted.
+        -   GC-content
+        -   Location of sgRNA within a gene (5’ (best) -> 3’ (worst))
+        
+        """
+    )
+    
+    expander4.markdown(
+        """
+        \n\n
+        Here we describe these scoring algorithms.\n\n
+        **Sequence model for predicting sgRNA efficiency** in CRISPR/Cas9 knockout (and CRISPRi/a) experiments [Xu et](https://genome.cshlp.org/content/25/8/1147): 
+        
+        DNA sequence features that contribute to single guide RNA (sgRNA) efficiency in CRISPR-based screens
+        - Predictive (sequence) model:
+            -   Select a list of essential genes whose deletion resulted in a growth disadvantage in genome-wide knockout experiments from published data sets.
+            -   Efficient sgRNAs:  all sgRNAs targeting these essential genes (two fold depletion).
+            -   Inefficient sgRNAs:  all sgRNAs targeting these essential genes (very low depletion w.r.to positive control)
+            -   Computedthe log odds ratio of nucleotide (40 bp sequences (aligned at the PAM) including the 19-bp or 20-bp spacer targets as well as their 3′ and 5′ flanking DNAs.) frequency between DNA sequences targeted by efficient and inefficient sgRNAs.
+            - Feature selection (sgRNA nucleotides): (1) Signs of the odds ratios are concordant; and (2) magnitudes of the odds ratios are above a threshold in all three sgRNA sets, where the threshold was computed from a statistical significance analysis
+            - Elastic-Net model was used to identify dominating nucleotide features: 28 sequence features were identified.
+        """
+    )
+    expander4.markdown('Cas9 knockout mode: reports prediction of DSB repair outcomes. The model estimates the probability that a given sgRNA will result in a frameshift mutation.')
+    expander4.markdown(
+        """
+        **CRISPR/Cas13 mRNA Knockdown:**
+        - Input: Default is 28 bp (28 bp sgRNA without PAM and 1bp protospacer flanking site (PFS)
+        - Output: MM0, MM1, MM2 and MM3 columns specify the number of off-target transcripts (with 0, 1, 2 or 3 mismatches, respectively) that your gRNA may bind to, outside of your target gene.
+        **CRISPR/Cas9/Cas9 nickase Knock-in:** An sgRNA activity [model](https://www.nature.com/articles/nmeth.3543): 
+        - Sequence: 35 bp (6nt upstream flanking + 20nt sgRNA + 3nt PAM + 6nt downstream flanking)
+        -   Total Features: 684
+            -   Mononucleotides Features: 140
+                -   4 bases (A,C,G,T) × 35 nt (6nt upstream, 20nt sgRNA, 3nt PAM, 6nt downstream)
+                -   Dinucleotide Features: 16 dinucleotides × 34 positions (of 35 bp sequence)
+                -   Using randomized logistic regression on 684 features with regularization and selected 91 features.
+        **Chari et. al [model](support vector machine model):** A support vector machine model
+        """
+    )
+    expander4.markdown(
+        """
+        **A deep-learning-based (Convolutional Neural Network - CNN) based DeepCpf1 model for Cas12a/Cpf1 RNA [Kim et. al](https://www.nature.com/articles/nmeth.4104):** An automated feature engineering and prediction algorithm that automatically learn informative representations of target sequences relevant to Cpf1 activity profiles.
+        -   Input: 34-bp target sequence
+        -   Uses one-hot encoding input layer, convolution layer with 80 filter and rectified linear unit (ReLU) to the convolution outputs and three fully connected layers of 80, 40, and 40 units, chromatin accessibility integration layer and regression output layer.
+        """
+        )
+    expander4.markdown(
+        """
+        **A predictive model (logistic regression classifier) for sgRNA activity (CRISPR/Cas9 knockout) [Doench](https://www.nature.com/articles/nbt.3026):** 
+        Efficiency score of a CRISPR/Cas9 system depends on:
+        -   Nucleotide composition of the DNA downstream from the spacer target
+        -   Sequence features: 4 nt upstream of the sgRNA target site, the 20 nt of sgRNA complementarity, the PAM and the 3 nt downstream of the sgRNA target sequence.
+        """
+    )
+    expander4.markdown('Self-complementarity column: Data suggests that self-complementarity within the gRNA or between the gRNA and RNA backbone can inhibit gRNA efficiency (Thyme et al., 2016 ). This option searches for complementarity within the gRNA, and between the gRNA and either a standard backbone (AGGCTAGTCCGT), an extended backbone (AGGCTAGTCCGT, ATGCTGGAA) or a custom backbone. Some users will choose to replace the leading nucleotides of their gRNA with “GG” for T7 transcription. Check this box to search for complementarity with the GG replacement.')
+    expander4.markdown(
+        """
+        **Method for determining off-targets in the genome ((selectable from Cas9/CasX/Cpf1 tabs in Options)):** 
+        -   **Cong et al., 2013:** single-base mismatches up to 11 bp 5' of the PAM completely abolish cleavage by Cas9. However, mutations further upstream of the PAM retain cleavage activity. We have created a uniqueness method that searches for mismatches only in the first 9 bp, since a mismatch further towards the PAM motif is predicted to cause no cleavage. 
+        -   **Hsu et al., 2013:** mismatches can be tolerated at any position except in the PAM motif. 
+        -   Default Method: Searches for mismatches only in the 20 bp upstream of the PAM.
+        """
+    )
+
+    st.markdown("**Please note that the tool was run for CRISPR/cas9 for NGG (knock-out), CRISPR/cas9-nickase (knock-out) for NGG and NRG (R=A or G), CRISPR/cpf1 for TTN, CRISPR/CasX for TTCN PAM and CRISPR/cas13(c2c2).**")
+    st.markdown("**Please note that not all options results in an efficienc score (0 is reported in efficiency column).**")
+    st.markdown(caution,unsafe_allow_html=True)
+    display_res(method,'\t','snp_id',select_method)            
+
+#
+def Guidescan2(method,select_method):
+    st.header("Guidescan2: "+method)
+    #st.markdown("**Summary**")
+    expander = st.expander("Summary")
+    expander.markdown("GuideScan2 employes Cas9 (tracrRNA and crRNA) and Cas12a (also known as cpf1, requires only crRNA) for sgRNA **(single- and paired-gRNA)** design (coding and noncoding genomic regions) for 8 organisms. It enables construction of high-specificity gRNA databases with reduced off-target effects.")
+    expander.markdown("CRISPR-Cas9 targets a 20-nucleotide spacer sequence at the end of the gRNA that is complementary to a DNA protospacer sequence followed immediately at the 3’ end by a PAM of the form NGG (more efficient targeting) or NAG (less efficient); here N stands for a ‘wildcard’, i.e. can match any nucleotide. Other natural and engineered CRISPR-Cas systems can **vary in PAM sequence, PAM position with respect to the protospacer sequence, and requirements on the level of similarity between gRNA and the target.**")
+    expander.markdown("Given a genomic region, the task of gRNA design is to find gRNAs that can target anywhere in that region. Many potential gRNAs can target at multiple locations in the genome with varying efficiency. Typically a gRNA is designed to target a particular location with **perfect complementarity** with all other targets of this gRNA are being **off-targets**. **Goal** of gRNA design is typically to **maximize gRNA efficiency at the primary target site while minimizing off-targeting.**")
+    expander.markdown("Variants and extensions of the gRNA design task include: paired gRNA design to select two gRNAs targeting flanking sites of a genomic region of interest; saturation experiment design to exhaustively select all gRNAs expected to target a selected region of interest; and library design to select a small number of the most effective gRNAs for each of hundreds or thousands of regions of interest.")
+    expander1 = st.expander("How it works")
+    
+    expander1.write(
+    """
+    **Algorithm*:* 
+    -   A single gRNA is evaluated against a genome B (Burrows-Wheeler Transform compressed genome and index).
+        -   All occurences of the sgRNA (A spacer sequence g and PAM set P, for all g′ in a Hamming distance (depth-first search using rank-queries on the forward and reverse complement strands of the BWT of the genome) ball of radius k centered at g) in B are identified. 
+        -   These occurrences are validated against the PAM set P, **pruning** any occurrences that are not followed by a PAM in this set. 
+        -   This set of validated occurrences forms the **set of targets for this gRNA**. 
+            -   gRNAs that have multiple perfect occurrences (indistinguishable intended target) are **filtered out**.
+        -   **gRNA with a single perfect occurrence**, considered to be its primary target, is then included in the database.
+        -   All other **targets that contain mismatches are considered off-targets.**
+    
+    -   GuideScan allows: target sequences, PAM, PAM position relative to the gRNA binding sequence, and gRNA length. 
+    **Potential off-targets:**
+    -   Uses a retrieval tree (trie, preprocess the targetable space in the genome, i.e. **all 20-mers followed by primary and secondary PAMs**) data structure to efficiently and precisely enumerates all targetable sequences (with a specific number of mismatches) present in a given genome. 
+    """
+    )
+
+    expander2 = st.expander("References")    
+    
+    expander2.write("[GuideScan2 Web App](https://guidescan.com)")
+    expander2.write("[GuideScan2 Paper](https://www.biorxiv.org/content/10.1101/2022.05.02.490368v1)")
+    
+    expander3 = st.expander("Tool Options: All you can do with this tool")
+    
+    expander3.write(
+    """
+    This tool offers sgRNA design for:
+    - **CRISPR/Cas9**
+    - **CRISPR/Cpf1**
+    - **Please note that this tool work best for genomic intervals >30bp.**
+    **Input:**  
+    -   Line delimited Genomic intervals (or DNA sequence) as a text file in the webapp **[here](https://guidescan.com/)** in the following format (of genomic range 30bp, 40bp etc):
+        - Line1: chr10:11676698-11676728
+        - Line2: chr1:152220435-152220465
+        - and so on
+    **Output:**
+    -   A csv file containing all gRNAs within the genomic regions provided in the input file
+    **Columns of interest (at most 6 gRNAa are reported from all possible)**:
+    -   gRNA-Seq and Target-Seq
+    -   PAM
+    -   Number of off-targets
+    -   Cutting efficiency (**Higher the better**)
+    -   Specificity (**Higher the better**) [Ref](https://www.biorxiv.org/content/10.1101/2022.05.02.490368v1.full.pdf)
+    -   Rank:
+        -   Uses a score that balances maximizing the gRNA specificity and cutting efficiency.
+        
+    """
+    )
+    expander3.markdown(gene_rank)
+    
+    expander4 = st.expander("Scoring")
+    expander4.markdown(
+        """
+        **Efficiency (Please see Scoring and Quality Matrices of the README section of this app):** Rule Set 2 [DOENCH 2016](https://www.nature.com/articles/nbt.3437)
+        -   sgRNAs were filtered out with cutting efficiency less than 0.25 or specificity less than 0.20
+        -   Selected six gRNAs for each gene. For genes with more than six sgRNAs, Ranked Genes and (selected six genes)
+            -   Ranked gRNAs for each gene using a simple score that balances maximizing the gRNA specificity and cutting efficiency.
+            -   Nucleotide at the 5’ end of gRNA (called g) is replaced with a G (called g') for better efficiency
+            -   Ranking gRNAs for each gene is defined as
+        **sgRNA Specificity and Rank score:** [DOENCH 2016](https://www.nature.com/articles/nbt.3437)
+        """
+    )
+    expander4.markdown(latext2)
+    #expander4.markdown('sgRNA Specifity (off-target) Score')
+    expander4.markdown('sgRNA Rank Score')
+    expander4.markdown(gene_rank)
+    
+    st.markdown("**Please note that the software was run with Cas9 (NGG PAM) and cpf1 (TTG PAM) option with all other options left as default.**")
+    st.markdown(tips,unsafe_allow_html=True)
+    st.markdown(caution,unsafe_allow_html=True)
+    
+    display_res(method,',','query',select_method)
+
+#Pnbdesigner
+def Pnbdesigner(method,select_method):
+    st.header("PnB Designer: "+method)
+    expander = st.expander("Summary")
+    #expander.markdown("**NEW: PnB Designer, we designed pegRNAs to model all known disease causing mutations available in ClinVar. Additionally, PnB Designer can be used to design guide RNAs to install or revert a SNV, scanning the genome with one CBE and seven different ABE PAM variants and returning the best BE to use**")
+    #expander.markdown("END NEW")
+    expander.markdown(
+        """
+        Single base editors (BEs) employe cytidine-deaminase (Cytosine BE, CBEs: C/G -> T/A converters) or Adenine-deaminase (Adenine BE, ABEs: A/T -> G/C converters) **can only introduce 4 edits** via sgRNA. 
+        
+        Prime Editors **(PEs)**, employing Cas9 nickase fused to an engineered reverse transcriptase template **(RTT, a wild-type Moloney Murine Leukemia Virus (M-MLV) for PE1 and mutagenised M-MLV in PE2 systems for enhanced DNA-RNA affinity, enzyme processivity, and thermostability)** via a gRNA called prime editing guide RNA **(pegRNA)**, on the other hand **can do all 12 edits.** PEs use pegRNA consisting of a 20 nt guide sequence, a primer binding site **(PBS)** and an RTT. The guide directs the Cas enzyme to a target site, the PBS hybridizes to the opposite strand to prime the reverse transcriptase, and the RTT integrates the desired genomic alteration. **Optimized** PE2, called (by employing additional sgRNA to nick the unedited strand so that cell's natural repair system copies the information in the edited strand to the complementary strand, permanently installing the edit) PE3 and PE3b with reduced off-targets are used. 
+        
+        **PnB Designer** allows design of pegRNAs for PEs and guide RNAs for CBE and the most recent ABEs such as ABEmax and ABE8e. PnB Designer makes it easy to design targeting guide RNAs for single or multiple targets on a variant or reference genome from organisms (and non-model organisms or synthetic constructs) spanning multiple kingdoms. **PnB Designer enables design of pegRNAs for all known disease causing mutations available in ClinVar**
+        
+        **Nicking guides** for the PE3 and PE3b systems are designed and filtered to provide a suitable selection of gRNAs. For PE3, only nicking guides 40–100 nt up/downstream of the initial nick are considered. For PE3b, only PAM sequences on the complementary strand that partially overlap with the PE2 PAM or protospacer sequence are displayed.
+        """
+        )
+    #expander.markdown("Nicking guides for the PE3 and PE3b systems are designed and filtered to provide a suitable selection of gRNAs. For PE3, only nicking guides 40–100 nt up/downstream of the initial nick are considered. For PE3b, only PAM sequences on the complementary strand that partially overlap with the PE2 PAM or protospacer sequence are displayed.")
+    #expander.markdown("PnB Designer allows design of pegRNAs for PEs and guide RNAs for CBE and the most recent ABEs such as ABEmax and ABE8e. PnB Designer makes it easy to design targeting guide RNAs for single or multiple targets on a variant or reference genome from organisms (and non-model organisms or synthetic constructs) spanning multiple kingdoms. It has been used PnB Designer to design candidate pegRNAs to model all human mutations in ClinVar")
+    #expander.markdown("**PnB Designer enables design of pegRNAs for all known disease causing mutations available in ClinVar**")
+    
+    expander1 = st.expander("How it works")
+    expander1.markdown(
+        """
+        **Prime editing steps (PE1):** 
+        -   Generation of a single-stranded break (SSB) in the non-target strand via Cas9 H840A nickase
+        -   DNA/RNA hybridization between the primer binding site (PBS) in the pegRNA and the 3′-region of the nicked strand
+        -   Reverse transcriptase (RT) mediated reverse transcription of the nicked strand according to the RT template sequence, which generates a 3'-flap containing the edit
+        -   Incorporation of the 3'-flap sequence in the DNA following ligation
+        -   The edited DNA strand displaces the unedited 5’ flap and the resulting heteroduplex is resolved by the cell’s mismatch repair (MMR) system
+        **PE3 and PE3b:**
+        -   PE3 uses the PE2 Cas9 nickase-pentamutant (five mutations in RT enzyme (D200N/L603W/T330P/T306K/W313F) to increase activity, enhance binding between the template and PBS, increase processivity, and improve thermostability) RT fusion enzyme and pegRNA plus an additional simple sgRNA, which directs the Cas9 nickase to nick the unedited strand at a nearby site. The newly edited strand is then favored as the template for repair during heteroduplex resolution. The process of double nicking, however, increases indel formation slightly. Designing the sgRNA with a spacer that only binds the edited strand, as in the PE3b system, guides nicking of the unedited strand only after the edit has occurred.
+        
+        """
+    )
+    image = Image.open('pe1.png')
+    expander1.image(image, caption='Prime Editing. https://www.addgene.org/crispr/prime-edit/')
+    expander1.markdown(
+    """
+    **Design strategy for pegRNAs:**
+    -   PnB Designer scans the sense and antisense strands to find all possible 5′-NGG-3′ protospacer adjacent motif (PAM) sites around the edit position, beginning+6 nt to the 3′ end of the desired edit and then scanning 100 nt in the 5′ direction, giving the user the option to choose also very distant PAMs. 
+    -   All possible NGG PAMs are stored and evaluated in respect to their distance from the edit position and the input RTT length. 
+    -   A pegRNA is considered a possible candidate if the edit is fully covered by the RTT. 
+    -   PnB Designer then stores the protospacer, PBS, and RTT sequences. 
+    -   Nicking guides for the PE3 and PE3b systems are designed and filtered to provide a suitable selection of gRNAs. 
+    -   For PE3, only nicking guides 40–100 nt up/downstream of the initial nick are considered. 
+    **Design strategy for BEs gRNAs:**
+    **Input:**
+    -   Sequence:
+        -   Upstream and downstream sequence with desired edit such as  (one of A>G, T>C, C>T, G>A)
+    -   Genomic coordinates: Retrieves the genomic sequence from the selected reference genome and converts the specific variant sequence to include the SNV. 
+        -   The resulting sequence is searched for **PAM (5′-NGG-3′ (SpCas9), 5′-NGA-3′ (SpCas9-VRQR), 5′-NGCG-3′ (SpCas9-NG), 5′-NNGRRT-3′ (SaCas9), 5′-NNNRRT-3′ (SaCas9-KKH), SpG 5′-NGN-3′, SpRY 5′-NRN-3′ and 5′-NYN-3′)** sites in the right distance to the SNV given the described editing windows of the Cas9-ABE and -CBE variants. 
+        -   With ABEs, C → T genomic variants can be reverted by A → G conversion on the antisense strand to achieve the intended edit on the sense strand. 
+        -   With CBEs, C → T and G → A conversions are possible. All previously described PAM variants with their respective editing window are tested against the edit.
+        -   Editing windows are defined based on the experimental data. 
+            -   ABEmax was implemented with an editing window from base 5–7, with base 1 being the most distal from the PAM site. 
+            -   For BE3 (R33A/K34A), the strong sequence preference for a 5′ T next to the edit has been included as well
+    """
+    )
+    expander2 = st.expander("References")
+    
+    expander2.write("[PnB Designer Web App](https://fgcz-shiny.uzh.ch/PnBDesigner/)")
+    expander2.write("[PnB Designer Paper](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04034-6)")
+    
+    expander3 = st.expander("Tool Options: All you can do with this tool")
+    
+    expander3.write(
+    """
+    This tool can be run in **two modes**:
+    - **Base editing mode:**
+        - Does not allow A>T or G>C, dels, or insertions.
+        - Only **180**/414 variants could be targeted. 
+        - **Columns of interest**: Protospacer, PAM and Base Editor (the system for producing the base edit). 
+        -   **There is no score**.
+    - **Prime editing mode:**
+        - Requires two guides: detailed in two files.
+        - pegRNA oligos for cloning.
+        - **Score: Higer is better**.
+        - Nicking guides: the corresponding nicking guides
+    
+    **Input**
+    -   Multiple lines provided in as a csv file in the webapp **[here](https://fgcz-shiny.uzh.ch/PnBDesigner/)** in the following format:
+        - Prime editing:
+            - varinat, chromosome num, genomic location, Edit, gene orientation, PBS, RTT
+            - Ex: rs7412, 19, 44908822, insA, +, 13, 13
+        - Base editing
+            - varinat, chromosome num, genomic location, SNO, gene orientation, PBS, RTT
+            - Ex: rs7412, 19, 44908822, C>T, +
+    **Output:** A csv file
+    -   Base editing  
+        -   20 nt protospacer sequence (targeting the variant sequence)
+        -   Edit position
+        -   PAM site
+        -   Suggested base editor that can target the variant
+        -   Score: No score is provided
+    -   Prime editing
+        -   pegRNA (protospacer and extension seq for both strands)
+        -   Edit position
+        -   PAM and PAM strand
+        -   Score (Higher the better)
+        -   PBS and RTT length
+        -   Nicking guides (PE3 or PE3b system) shown by selecting Nicking_guides_PE3_PE3B from the side bar.
+    """
+    )
+    
+    #expander3.markdown(tips,unsafe_allow_html=True)
+    expander4 = st.expander("Scoring")
+    expander4.markdown(
+        """
+        **Prime Editing:**  
+        Primer binding site (PBS) and reverse transcriptase templeta (RTT) length are important parameters for successful pegRNA design. In PnB Designer, PBS and RTT lengths are by default set at suggested values of 13 nt. The pegRNA Score follows a [penalty system](https://www.nature.com/articles/s41586-019-1711-4) with **larger negative numbers** are indicative of worse pegRNA designs.  
+        
+        **pegRNA Score (Sum of all penalties):**
+        -   Penalty system
+            -   C as the first base in the 3′ extension: penalty score =  − 28
+            -   T (thymine) > 4 nucleotides in the 3′ extension of the pegRNA are strongly penalized with a score =  − 50
+            -   number of homologous bases after the intended edit < 5, penalty score = − 6 
+            -   larger negative numbers are indi- cating worse pegRNA designs
+        """
+    )    
+    st.markdown("**Please note that the tool was run in Base editing and Prime editing modes. Corresponding nicking guides are also reported here.**")
+    st.markdown(caution,unsafe_allow_html=True)
+    target_seq = display_res(method,',','query',select_method)
+    #st.write(target_seq)
+    if len(target_seq)>0 and target_seq[0]!=0:
+        ForeCastBE(target_seq ,method,select_method)
+        
+
+#SNP_CRISPR
+def SNPcrispr(method,select_method):
+    st.header("SNP_CRISPR: "+method)
+    #st.markdown("**Summary**")
+    expander = st.expander("Summary")
+    expander.markdown(
+        """
+        **SNP-CRISPR** 
+        -   Facilitate identification of sgRNAs in **non-reference genomes**, **across varying genetic backgrounds** or for specific targeting of **SNP-containing alleles** (for example, disease relevant mutations). 
+        -   It computes **efficiency and specificity** scores for sgRNA designs targeting **both** the **variant** and the **reference**.
+        -   Can be used to design sgRNAs based on public variant data sets or user-identified variants
+        -   Design sgRNAs for NGG and NAG PAM sequences
+        """
+    )
+    expander1 = st.expander("How it works")
+    expander1.write(
+    """
+    **Design:**  
+    - SNP-CRISPR validates the input reference sequences and **warn if the submitted reference sequences does not match**, which might reflect a different version of the genome assembly being used in the user input vs. SNP-CRISPR and re-constructs the template sequence, swapping the reference nucleotide with the variant nucleotide for SNPs, while inserting or deleting the corresponding fragment for indel type variants.
+    - Computes potential variant-targeting sgRNAs based on **availability of PAM (NGG or NAG) sequences** in the neighboring region. 
+    - sgRNA designs that contain **four or more consecutive thymine residues**, which can result in termination of RNA transcription by RNA polymerase III, **are filtered out**.
+    - Computes efficiency [Housden et al. 2015](https://pubmed.ncbi.nlm.nih.gov/26350902/) and specificity (based on BLAST results against the reference genome) scores.  
+    **For identification of the best variant-specific sgRNAs, following information are provided.**
+    -   Iinformation on both sgRNAs targeting specific variants and sgRNAs targeting the reference sequence in the same region. 
+    -   The efficiency score and an off-target score
+    -   Positions of relevant SNPs or indels in the sgRNA are included.
+    """
+    )
+    #expander1.markdown("**To facilitate identification of the best variant-specific sgRNAs, we provide information about both sgRNAs targeting specific variants and sgRNAs targeting the reference sequence in the same region. The efficiency score and an off-target score are provided, and the positions of relevant SNPs or indels in the sgRNA are included so that users can select the most suitable sgRNA or filter out less optimal ones.**")
+    
+    
+    expander2 = st.expander("References")
+    expander2.write("[SNP_CRISPR Web App](https://www.flyrnai.org/tools/snp_crispr/web/)")
+    expander2.write("[SNP_CRISPR Paper](https://academic.oup.com/g3journal/article/10/2/489/6026318)")
+    
+    
+    expander3 = st.expander("Tool Options: All you can do with this tool")
+    #expander3.markdown(tips,unsafe_allow_html=True)
+    expander3.write(
+    """
+    This tool can design guides for:
+    - **NGG.**
+    - **NAG.**
+    - **Target multiple variants within the same guide.**
+    - Public variant data sets or user-identified variants.  
+    **Input:** Multiple lines provided in as a (6 columns) csv file uploaded to the webapp **[here](https://www.flyrnai.org/tools/snp_crispr/web/)** in the following format:
+    - varinat, chromosome, position, strand, reference, variant
+    - Ex: rs7412, 19, 44908822, C, +, T
+    **Output:** A csv file  
+    -   **Columns of interest**: 
+        -   Housden Efficiency Score [Ref](https://www.ncbi.nlm.nih.gov/pubmed/26350902) (Range from 1.47-12.32 **(higher is better, > 5 recommended))**
+        -   Off Target Score (Range from 0-5441.73 (lower is better, < 1 recommended))
+    """
+    )
+    
+    expander4 = st.expander("Scoring")
+    expander4.markdown(
+        """
+        **Efficiency score:**
+        -   Used 75 sgRNAs to target a single sequence cloned into a luciferase reporter.
+        -   3 replicates using sgRNAs with 0, 1, 2, or ≥ 3 mismatches (black bars) or in the absence of sgRNA
+        -   A probability matrix (of size 4(bp)x20(position in sgRNA)) is dynamically computed reflecting a cumulative P value for high efficiency of each nucleotide from position 1 to 20, with higher values representing higher efficiency.
+        **Off-target (Specificity) score:**        
+        -   Potential off-target loci are evaluated by performing a BLAST search of each (sgRNA) design against the species reference genome. 
+        -   3 base pairs mismatch (on the 5' end of sgRNA) as a cutoff to detect an off-target
+        -   An off-target score is assigned based on both the number of hits found in the BLAST results and the number of mismatched nucleotides per off-target hit.         
+        """
+    )
+    st.markdown(caution,unsafe_allow_html=True)
+    st.markdown("**Please note that the software was run for NAG and NGG PAM sequences only.**")
+
+    display_res(method,',','Gene',select_method)
+
+#ECRISP
+def ecrisp(select_method):
+    st.header("E-CRISP")
+    expander = st.expander("Summary")
+    #st.markdown("**Summary**")
+    expander.markdown("E-CRISP is used to design gRNA sequences **(supports 12 organisms)** and can also reevaluate CRISPR constructs for on- or off-target sites and targeted genomic loci. It identifies target sequences complementary to the gRNA ending in a 3ʹ protospacer-adjacent motif (PAM), **N(G or A)G** and uses a fast indexing approach to find binding sites and a binary interval tree for rapid annotation of putative gRNA target sites.")
+    expander.markdown("**Off-target** effects and target-site homology are evaluated using Bowtie2 aligner. Designs are **shown** in the output if the number of **off-targets does not exceed a user-specified threshold**. **More than one** design targeting a desired locus are **ranked** according to on-target specificity and number of off-targets.")
+    expander1 = st.expander("How it works")
+    expander1.markdown(
+        """
+        -   E-CRISP identifies target sequences ending with a PAM motif 5′-NGG/NAG-3′ and uses them to propose guide RNAs. 
+        -   It uses a fast indexing approach to locate binding sites and the alignment program Bowtie 2 to identify off-target effects. 
+        -   Designed sgRNAs are assessesed based on genomic context (e.g. exons, transcripts, CpG islands) and ranked according to target specificity and efficiency.
+        """
+    )
+    expander1.write(
+    """
+    **Input:**
+    -   Multiple lines provided in the Input fasta sequence edit box in the webapp **[here](http://www.e-crisp.org/E-CRISP/index.html)** in the following format
+        - Line1: rs12726330
+        - Line2: CGGGACATGGAAGAGGTCTGGACCAGGGTACTGGGAAGGCGCTCGGAGGA
+        - Line3: rs76763715
+        - Line4: CCAGCCGACCACATGGTACAGGAGGTTCTAGGGTAAGGACAAAGGCAAAG
+        - and so on
+    **Output:**
+    -   A tab separated .tab file
+        - **Columns of interest**:
+            -   sgRNA Length
+            -   Efficiency Score (E Score, **Higher the better**) [Ref](https://www.nature.com/articles/nbt.3026) 
+            -   Specificity Score (S Score, **Higher the better** (max = 100))
+            -   Doench and Xu Score
+            -   Nucleotide sequence (A, C, G, T) compositions in %
+    """
+    )
+    
+    expander2 = st.expander("References")
+    expander2.write("[E-CRISP Web App](http://www.e-crisp.org/E-CRISP/)")
+    expander2.write("[E-CRISP Paper](https://www.nature.com/articles/nbt.3026)")
+    expander3 = st.expander("Tool Options: All you can do with this tool")
+    expander3.write(
+    """
+    This tool offers single or paired sgRNA and:
+    - **Options for PAM:**
+        - **Relaxed**
+        - **Medium:**
+        - **Strict** 
+    - **Options for Design:**
+        - knockdown.
+        - knockin.
+        - N/C terminal tagging.
+        - CRISPRi.
+        - CRISPRa.
+    - **Other filtering options.**
+        -   gRNA length, allowed % of G, C, A and T, 3' and 5' flanking sequence length, off-targets evaluation etc
+    """
+    )
+    
+    expander4 = st.expander("Scoring")
+    expander4.markdown(
+        """
+        E-CRISP utilises its own **SAE (Specificity, Annotation, Efficacy) score** to determine the quality of each sgRNA in addition to Rule Set 1 [Doench et al](https://www.nature.com/articles/nbt.3026) and [Xu et al](https://genome.cshlp.org/content/25/8/1147). Please see Scoring and Quality Matrices in README tab of this app for details.
+        -   Specificity Score (S-score):
+            -   Start with 100.
+            -   For every off-target, substract (20-mismatches)/iteration.
+        -   Annotation Score (A-score):
+            -   Start with zero
+            -   For every hit exon add 5/exon count
+            -   For every hit CpG Island subtract 1
+            -   For every start codon hit add 1
+            -   For every stop codon hit add 1
+            -   For every CDS hit add 5/CDS count
+            -   For every gene hit add 1
+        -   Efficacy Score (E-score):
+            -   Add 1 if last 6 bp have a CG content higher then 70 %
+            -   Subtract 1 if the entire sequence has GC content > 80 %
+            -   Add 1 if sequence is preceded by a G
+            -   Add 1 if there are GG in front of the target sequence (opposite the PAM)
+            -   Add micro-homology score (is higher when sequence tends to give out of frame deletions)
+        """
+    )
+
+    
+    st.markdown(tips,unsafe_allow_html=True)
+    st.markdown("**Please note that the result reported here are for PAM=NGG**")
+    st.markdown(caution,unsafe_allow_html=True)
+    #st.header(select_method)
+    fnm=cwd+select_method+'/'+select_method+'_NGG'+'.csv'
+    data = pd.read_csv(fnm, sep=',')
+    #get snp data
+    #data_snp = data[data['Name'].str.contains(variant_spl[0])]
+
+    if len(variant_spl) > 1: #variant_spl has two components
+        #data_snp = data[data['rs_id'].str.contains(variant_spl[1])]
+        data_snp = data[data['Name'].str.contains(variant_spl[1])]
+        data_snp['Name']=variant_spl[0]+':'+data_snp['Name']
+    else:
+        #data_snp = data[data['rs_id'].str.contains(variant_spl[0])]
+        data_snp = data[data['Name'].str.contains(variant_spl[0])]
+        data_snp['Name']='NaN'+':'+data_snp['Name']
+    data_snp.reset_index(drop=True, inplace=True)
+
+
+    data_snp.reset_index(drop=True, inplace=True)
+    if data_snp.shape[0]>0:
+        df = transform(data_snp,'Please Select columns to save whole table')
+        #fname = st.text_input('Please input file name to save Table', 'temp')
+        #fname = st_keyup("Please input file name to save Table", value='temp')
+        csv = convert_df(df)
+
+        st.download_button(
+            label="Download Table as CSV file",
+            data=csv,
+            file_name=select_method+'_'+variant_spl[0]+'.csv',#fname+'.csv',
+            mime='text/csv',
+        )
+
+    #st.table(data_snp)
+    if len(variant_spl) > 1:
+        f"""
+            **Results for SNP: {variant_spl[1]} on GENE: {variant_spl[0]}**
+        """
+    else:
+        f"""
+            **Results for SNP: {variant_spl[0]} on GENE: NAN**
+        """
+
+    #AgGrid(data_snp)
+    st.markdown(table_edit,unsafe_allow_html=True)
+    gb = GridOptionsBuilder.from_dataframe(data_snp)
+    gb.configure_pagination(enabled=False)#,paginationAutoPageSize=False)#True) #Add pagination
+    gb.configure_default_column(enablePivot=True, enableValue=True, enableRowGroup=True)
+    gb.configure_selection(selection_mode="multiple", use_checkbox=True)
+
+    gb.configure_side_bar()
+    gridOptions = gb.build()    
+
+    grid_response = AgGrid(
+        data_snp,
+            height=200,
+            gridOptions=gridOptions,
+            enable_enterprise_modules=True,
+            update_mode=GridUpdateMode.MODEL_CHANGED,
+            data_return_mode=DataReturnMode.FILTERED_AND_SORTED,
+            fit_columns_on_grid_load=False,
+            header_checkbox_selection_filtered_only=True,
+            use_checkbox=True,
+            width='100%'
+    )
+
+    #data = grid_response['data']
+    selected = grid_response['selected_rows']   
+    if selected:
+        st.write('Selected rows')
+        
+        dfs = pd.DataFrame(selected)
+        st.dataframe(dfs[dfs.columns[1:dfs.shape[1]]])
+
+        dfs1 = transform(dfs[dfs.columns[1:dfs.shape[1]]],'Please select columns to save selected Table')
+        #csv = convert_df1(dfs[dfs.columns[1:dfs.shape[1]]])
+        csv = convert_df1(dfs1)
+        
+
+        st.download_button(
+            label="Download data as CSV",
+            data=csv,
+            file_name=select_method+'_'+variant_spl[0]+'.csv',
+            mime='text/csv',
+        )
+
+    
+#ForeCast-BE results
+def display_ForeCast_BE_res(data_snp,method,variant_spl):    
+#if method == 'bystander_ABE8e_mean':
+    #AgGrid(data_snp)
+    st.markdown(table_edit,unsafe_allow_html=True)
+    gb = GridOptionsBuilder.from_dataframe(data_snp)
+    gb.configure_pagination(enabled=False)#,paginationAutoPageSize=False)#True) #Add pagination
+    gb.configure_default_column(enablePivot=True, enableValue=True, enableRowGroup=True)
+    gb.configure_selection(selection_mode="multiple", use_checkbox=True)
+
+    gb.configure_side_bar()
+    gridOptions = gb.build()    
+
+    grid_response = AgGrid(
+        data_snp,
+            height=200,
+            gridOptions=gridOptions,
+            enable_enterprise_modules=True,
+            update_mode=GridUpdateMode.MODEL_CHANGED,
+            data_return_mode=DataReturnMode.FILTERED_AND_SORTED,
+            fit_columns_on_grid_load=False,
+            header_checkbox_selection_filtered_only=True,
+            use_checkbox=True,
+            width='100%'
+    )
+
+
+#def display_res(method,sep,rsid,select_method):
+def display_res(method,sep,rsid,select_method):    
+#if method == 'bystander_ABE8e_mean':
+    #st.header(select_method+' with: '+method+' option')
+    fnm=cwd+select_method+'/'+select_method+'_'+method+'.csv'
+    #data = pd.read_csv(fnm, sep=',')
+    data = pd.read_csv(fnm, sep=sep)
+    
+    #get snp data
+    if len(variant_spl) > 1: #variant_spl has two components
+        #data_snp = data[data['rs_id'].str.contains(variant_spl[1])]
+        data_snp = data[data[rsid].str.contains(variant_spl[1])]
+        data_snp[rsid]=variant_spl[0]+':'+data_snp[rsid]
+    else:
+        #data_snp = data[data['rs_id'].str.contains(variant_spl[0])]
+        data_snp = data[data[rsid].str.contains(variant_spl[0])]
+        data_snp[rsid]='NaN'+':'+data_snp[rsid]
+    data_snp.reset_index(drop=True, inplace=True)
+    
+    if data_snp.shape[0]>0:
+        df = transform(data_snp,'Please Select columns to save whole table')
+        #fname = st_keyup("Please input file name to save Table", value='temp') #st.text_input('Please input file name to save Table', 'temp', live=True)
+        
+        csv = convert_df(df)
+
+        st.download_button(
+            label="Download Table as CSV file",
+            data=csv,
+            #file_name=fname+'.csv',
+            file_name=method+'_'+variant_spl[0]+'.csv',
+            mime='text/csv',
+        )
+
+    if len(variant_spl) > 1:
+        f"""
+            **Results for SNP: {variant_spl[1]} on GENE: {variant_spl[0]}**
+        """
+    else:
+        f"""
+            **Results for SNP: {variant_spl[0]} on GENE: NAN**
+        """
+    #AgGrid(data_snp)
+    st.markdown(table_edit,unsafe_allow_html=True)
+    gb = GridOptionsBuilder.from_dataframe(data_snp)
+    gb.configure_pagination(enabled=False)#,paginationAutoPageSize=False)#True) #Add pagination
+    gb.configure_default_column(enablePivot=True, enableValue=True, enableRowGroup=True)
+    gb.configure_selection(selection_mode="multiple", use_checkbox=True)
+
+    gb.configure_side_bar()
+    gridOptions = gb.build()    
+
+    grid_response = AgGrid(
+        data_snp,
+            height=200,
+            gridOptions=gridOptions,
+            enable_enterprise_modules=True,
+            update_mode=GridUpdateMode.MODEL_CHANGED,
+            data_return_mode=DataReturnMode.FILTERED_AND_SORTED,
+            fit_columns_on_grid_load=False,
+            header_checkbox_selection_filtered_only=True,
+            use_checkbox=True,
+            width='100%'
+    )
+
+    #data = grid_response['data']
+    selected = grid_response['selected_rows']   
+    if selected:
+        st.write('Selected rows')
+        
+        dfs = pd.DataFrame(selected)
+        st.dataframe(dfs[dfs.columns[1:dfs.shape[1]]])
+
+        dfs1 = transform(dfs[dfs.columns[1:dfs.shape[1]]],'Please select columns to save selected Table')
+        #csv = convert_df1(dfs[dfs.columns[1:dfs.shape[1]]])
+        csv = convert_df1(dfs1)
+        
+
+        st.download_button(
+            label="Download data as CSV",
+            data=csv,
+            file_name=method+'_'+variant_spl[0]+'.csv',
+            mime='text/csv',
+        )
+    if data_snp.shape[0] > 0:
+        if select_method=='BE-DICT':
+            return  data_snp['Outp_seq']
+        else:
+            return  data_snp['Protospacer']
+    else:
+        return [0]
+
+
+
+cwd=os.getcwd()+'/'+'data/'
+
+#get snps list
+snps = pd.read_csv("SNPS.csv")
+variants=snps['GENE:SNP'].unique()
+variants_s=sorted(variants,key=len)
+
+caution = '<p style="font-family:sans-serif; color:Red; font-size: 18px;">Please note that not (necessarily) all variants are targetted.</p>'
+
+tips = '<p style="font-family:sans-serif; color:Green; font-size: 18px;">Important Tool Tips:</p>'
+
+table_edit = '<p style="font-family:sans-serif; color:Green; font-size: 16px;">About Table: Please note that table can be <b>sorted based on by clicking on any column</b> and <b>Multiple rows can be selected</b> (by clicking check box in first column) to save only those rows.</p>'
+
+
+
+st.title('Single Base Editiors')
+expander = st.expander("NEW TOOLS CURRENTLY AVAILABLE/COMING SOON IN THE APP")   
+#st.header('How to use this app')
+expander.markdown(
+    """
+    **NEW: PLEASE NOTE THAT [FORECasT-BE](https://partslab.sanger.ac.uk/FORECasT-BE) is now part of the App to predict guide efficiency for ABEs and CBEs**
+    -   **Available under BE-DICT and PnB Designer options**
+    **Coming Soon.**
+    -   **We are also testing a prime editing efficiency calculator [MinsePIE](https://github.com/julianeweller/MinsePIE) and will be available soon**
+    -   **Another Prime and Base editing tool [PE/BE-Designer](http://www.rgenome.net/be-designer/) will also be part of the app soon**
+    """
+    )
+
+st.markdown('**Please select an option from the sidebar**')
+st.sidebar.image("logo-card-white.png", use_column_width=True)
+#ReadMe = st.sidebar.radio('ReadME',value=True)
+
+#Calc = st.sidebar.radio('Selection Menu')
+Calc = st.sidebar.radio(
+    "",
+    ('ReadME', 'Tools Selection Menu'))
+
+#if Calc:
+
+#st.sidebar.title("Selection Menu")
+if Calc == 'ReadME':
+    #st.markdown("[Introduction](#Introduction)")    
+    #st.markdown("[How do base editors work](#How-do-base-editors-work)")
+    
+    expander = st.expander("How to use this app")   
+    #st.header('How to use this app')
+    expander.markdown('Please note that all tools were run using Human Genome **(hg38)**. Each tool require **specific input format** (described for each tool selected from the sidebar when **Tools Selection Menue is enabled**) and **output results** in different formats **(with different columns based on method selected as described under each tool)**. Some of these tools also allow selection of various **endonucleases and related options**, their **reulsts are provided as radio controls** in the sidebar of this app under each tool.')
+    expander.markdown('**Requirements:** 1) Python3.4 or higher and 2) streamlit 1.13')
+    expander.markdown('To start this app, **unzip** the base_editor_app.zip in a folder of your choice')
+    expander.markdown('Open shell terminal and **cd to base_editor_app folder**')
+    expander.markdown('Type: **streamlit run baserditorsV3.py**, It will launch baseeditor app in the default browser')
+    expander.markdown('**By default** README radio button is enabled to describe general information about the App and How to use it.')
+    expander.markdown("- Please enable **Tools Selection Menu** radio control in the sidebar **to enable variant, tool and endonuclease options**")
+    expander.markdown("- Select Desired Variant from the dropdown list")
+    expander.markdown("- Select a Tool")
+    expander.markdown("- Select one of the options **(if available)**")
+
+     
+    expander1 = st.expander('Introduction')
+    
+    expander1.markdown(
+        """**TLDR**  
+            This app **reviewes** popular single base quality estimators for a **[list](https://drive.google.com/file/d/1Sxb-Cc-epbs6vujQaX9wa5acqus0RW3q/view?usp=sharing) of rsIDs** per disease of interest based on CARD’s cross-NDD efforts. We filtered our candidate list of **base edit predictors** for those that are at least **semi-automated and reproducible** (no copy and pasting IDs or sequences one at a time).
+            """
+            )
+    expander1.markdown('Clustered Regularly Interspaced Short Palindromic Repeat CRISPR/CRISPR-associated (Cas) systems, such as **Cas9 (type II endonuclease which recognises the 5"'"-NGG-3"'" PAM)** and **Cas12a (type V endonuclease which recognises the 5"'"-TTTV-3"'" PAM)** (also called Cpf1), are the primary tools used for genome editing. CRISPR/Cas9 based gene editing uses sequence-specific nucleases (Cas9 etc) and a sgRNA for precise gene knock-out/in whereas catalytically inactive Cas9 (dCas9) provides gene expression regulation via activation/inhibition (CRISPRa/i) and Cas9 nickase (nCas9) + sgRNA, by incorporating deaminases, enables single base editing. Finally nCas9 + prime editing gRNA (pegRNA) enables editing of all 12 possible base edits')
+    expander1.markdown('**A CRISPR/Cas9 sytem** requires a custom single guide RNA (sgRNA) that contains a crRNA (a 20 nt sequence homologous to the region of interest that direct Cas9 (or dCas9 or Cas9 nickase) nuclease to the region of interest) and a Cas9 nuclease-recruiting sequence (tracrRNA). An ideal gRNA should maximize on-target activity **(cleavage efficiency)** while also minimizing potential off-target effects **(specificity)**.')
+    expander1.markdown('**Current sgRNA design tools** (including HDR based and deaminase based) fall under three major categories:')
+    expander1.markdown('- **Alignment-based:** candidate gRNAs are aligned and retrieved from the given genome by locating PAM')
+    expander1.markdown('- **Hypothesis-driven/Rule-based:** sgRNA activity is predicted according to empirically derived, handcrafted rules (GC content, sequence preference etc)')
+    expander1.markdown('- **Learning-based:** sgRNAs are scored by models trained on datasets of CRISPR experiments.')
+    
+    expander1.markdown('**Two categories of DNA base editors (BEs) are:**')
+    
+    expander1.markdown('- Cytosine base editors **(CBEs: C/G -> T/A converters)** and')
+    expander1.markdown('- Adenine base editors **(ABEs: A/T -> G/C converters)** as shown in Figure below')
+    image = Image.open('CBE_ABE.webp')
+    expander1.image(image, caption='Cytosine and Adenine base editors. Figure from: https://www.nature.com/articles/s41573-020-0084-6')
+    expander1.markdown('**Prime Editors (PEs)**')
+    expander1.markdown('While base editors can only introduce 4 edits, PEs on the other hand can do all 12 edits using usual Cas9 (and its variants) and a gRNA called prime editing guide RNA (**pegRNA**). PEs use pegRNA consisting of a 20 nt guide sequence, a primer binding site (PBS) and a reverse transcriptase template (RTT). The guide directs the Cas enzyme to a target site, the PBS hybridizes to the opposite strand to prime the reverse transcriptase, and the RTT integrates the desired genomic alteration.')
+    expander1.markdown('In this app we also tested a **prime editor** and an **RNA editor for gene knockdown** for these targets.')
+
+    expander2 = st.expander('How does CRISPR-Cas9 (and base editing) System works')
+    expander2.markdown('**CRISPR-Cas9** system consists of **two** key components (accomplishing three steps: Recognition, Cleavage, and Repair):')
+    expander2.markdown("- **Recognition:** A single guide RNA (sgRNA which is composed of target-specific CRISPR RNA (crRNA) and an auxiliary trans-activating crRNA (trcrRNA) joined by linker loop) targeting Cas9 to a specific DNA locus")
+    #expander2.markdown('- **Recognition:** A guide RNA (gRNA) that consists of a small piece of pre-designed RNA sequence (usually 20 bases complimentary to the target DNA sequence in the genome) and **guides** Cas9 to the right part of the genome.')
+    expander2.markdown('- **Cleavage, and Repair**: A Cas9 enzyme (has six domains, REC I (responsible for binding guide RNA), REC II, Bridge Helix, PAM Interacting (confers PAM specificity and is responsible for initiating binding to target DNA), HNH and RuvC (each cut single-stranded DNA after 3rd base upstream of PAM)) that acts as a pair of ‘molecular scissors’ that **cut** the two strands of DNA at a specific location in the genome **so that bits of DNA can then be added or removed** using either non-homologous end joining **(NHEJ)** or homology-directed repair **(HDR)**.')
+    expander2.markdown('CRISPR-Cas9 system, while efficient at knocking out genes, it is very inefficient at introducing single base changes and oftenly introduces random insertions and deletions **(indels)** during double-stranded breaks (DSB) repair. **Base editors** on the other drives specific, accurate, and permanent single nucleotide changes without introducing double-stranded DNA breaks.')
+    expander2.markdown("**Base editing requires three elements:**")
+    expander2.markdown("- A single guide RNA (sgRNA) for ABEs and CBEs or pegRNA for PEs")# which is composed of target-specific CRISPR RNA (crRNA) and an auxiliary trans-activating crRNA (trcrRNA) joined by linker loop) targeting Cas9 to a specific DNA locus")    
+    expander2.markdown("- A Cas nickase (Cas9 with mutation in RuvC nuclease domain, which enables it to nick but not cleave DNA) or Cas fused to a deaminase that makes the edit.")
+    expander2.markdown("- A target base for editing within the editing window specified by the Cas9 protein")
+    #expander2.markdown('The Cas9 protein has six domains, REC I (responsible for binding guide RNA), REC II, Bridge Helix, PAM Interacting (**confers PAM specificity and is responsible for initiating binding to target DNA**), HNH and RuvC (**each cut single-stranded DNA after 3rd base upstream of PAM**). Cas9 and its variants are highly specific to various PAM sequences and have two endonuclease domains: the n-terminal RuvC-like nuclease domain and the HNH-like nuclease domain near the center of the protein')
+    expander2.markdown('A whole range of **CBEs** and **ABEs** have been developed. Various CEBs ranging from **simple** deactivated Cas9 (dCas9)+cytidine deaminsae+uracil DNA glycosylase inhibitor (UGI) to improved single mutated Cas9 (nCas9)+cytidine deaminsae+uracil DNA glycosylase inhibitor (UGI) called BE3 systems and its variants such as Target-AID editors were developed. 4th generation BEs (called BE4, such as BE4max etc which focus on improving editors delivery to the nucleus) further minimize undesired base conversions that can happen with BE3.') 
+    expander2.markdown('Similar to CBEs, **Adenine base editors (ABEs)** such as ABEmax, ABE4max, ABE8e and ABE8s were also developed.')
+    #st.markdown('Similar to CBEs, adenine base editor such as ABEmax, ABE4max, ABE8e and ABE8s were also developed.')
+    #st.markdown("**Key parameters for a good BE are:**")
+    #st.markdown("- Editing efficiency: 4th generation base editiors **BE4max and ABE4max [2](https://www.nature.com/articles/nbt.4172), ABE8s [3](https://www.nature.com/articles/s41587-020-0491-6) and Target-AID (dual base) [4](https://www.nature.com/articles/s41587-020-0535-y)**")
+    #st.markdown("- Editing efficiency")
+    #st.markdown("- Minimal off-target effects")
+    expander3 = st.expander("Scoring and Quality Matrices")
+    expander3.markdown(
+        """
+        An ideal CRISPR/Cas9 (and its variants including base and prime editors) system should employ sgRNA (and pegRNA) that **maximize** on-target activity **(efficiency)** and **minimize** potential off-target effects **(specificity)**. Balancing these two requirements can be a challenging. Various sgRNA design tools **assist** in the selection of the best target sites available by **excluding undesirable targets based on predicted low efficiency or specificity**, saving resources and time in the experiment.
+    
+        **Efficiency (On-Target Activity):**
+        
+        Ideally, CRISPR/Cas9 protein scans the PAM sequence, and sgRNA (spacer sequence complementary to the targeted DNA sequence) recognises target loci and activates endonuclease activity to cleave specific sites. **sgRNA Cleavage efficiency**, however, varies greatly among different target sites and/or cell lines and **depends on several factors** including sgRNA sequence (sequence composition, nucleotide position, GC content), genetic and epigenetic features etc.
+        
+        Most sgRNA design tools employ a **combination of features** for efficinecy scoring. Broadly, these tools fall into tow categoris.
+        - **Hypothesis-driven (rule-based) tools:** These tools employ **simple** sgRNA sequence metrices such as: GC content and position dependent specific sequence motifs. **Enhanced** sgRNA based metrices such as sequence, structural, and chromatin characteristics are also adapted in various tools.
+        - **Machine-learning (and Deep-learning) tools:** Cleavage efficiency of sgRNA is a complex interplay of factors such as target sequence, cellular environment and experimental conditions. Therefore, simple rule-based system may not be adequate for choosing target sites and designing CRISPR gRNAs. Machine learning (deep-learning) tools employ different hand-curated (auto-detected) **feature sets** including sgRNA sequence, PAM, and/or adjacent nucleotides and window size on the target sequence to design sgRNA.
+    """
+    )
+    expander3.markdown(
+        """   
+        **Efficiency models used in tools discussed in this App**
+        
+        **An sgRNA activity predictive model (An L1-regularized linear support vector machine - SVM) [Doench et. al 2014](https://www.nature.com/articles/nbt.3026):** ***Rule set 1*** 
+        
+        Based on sequence features of 1,841 sgRNAs (targeting all possible target sites in six endogenous mouse and three endogenous human genes), a predictive model of sgRNA activity was developed, as described below, to improve sgRNA design for gene editing and genetic screens. Model was trained using a total of 586 sequence and GC features as explained below.
+        -   Rnaking sgRNAs from 0 (worst) - 1(best).
+        -   Total Features: 586
+            -   Sequence: 30bp sequence(4bp upstream + 20bp sgRNA protospacer + 3bp PAM + 3bp downstream) 
+                -   Single nucleotide Features: 120 
+                    -   4 bases (A,C,G,T) × 30 bp sequence
+                -   Dinucleotide Features: 464
+                    -   16 dinucleotides × 29 positions (of 30 bp sequence)
+                -   2 GC-count features in the 20 nt of the sgRNA 
+                    -   Deviations of GC-count below and above ten nucleotide
+        -   sgRNA score:
+            -   Assuming w_{ij} are model weights for the features i for a particular guide s_{j} and the intercept int. Then the sgRNA score f(s_{j}) is given via logistic regression as:
+        """
+    )
+    expander3.markdown(latext1)
+    
+    expander3.markdown("After validation, final trained model using all available data used only 72 of the 586 features, including both GC-count features.")
+    
+    expander3.markdown(
+        """                
+        **Linear Predictive (sequence) model** (CRISPR/Cas9 knockout and CRISPRi/a) [Xu et al 2015](https://genome.cshlp.org/content/25/8/1147): 
+        
+        Models for predicting sgRNA efficiency for CRISPR knockout and CRISPRi/a based on systematic assessment of the effect of sequence (sgRNA protospacer, DNA target and downstream of DNA target) context based on six published data sets.
+        -   Identification of efficient and inefficient sgRNAs in published data sets
+            -   Essential genes: Genes whose deletion resulted in a growth disadvantage in genome-wide knockout experiments.
+                -   Efficient sgRNAs:  all sgRNAs targeting these essential genes (two fold depletion).
+                -   Inefficient sgRNAs:  all sgRNAs targeting these essential genes (very low depletion w.r.to positive control)
+            -   Computed log odds ratio of (40 bp sequences (aligned at the PAM) including the 19-bp or 20-bp spacer targets as well as their 3′ and 5′ flanking DNAs) **nucleotide frequency between DNA sequences targeted by efficient and inefficient sgRNAs**.
+        -   Feature selection (sgRNA nucleotides): 
+            -   Signs of the odds ratios are concordant
+            -   Magnitudes of the odds ratios are above a threshold (computed from statistical significance analysis) in all three sgRNA sets.
+        -   Elastic-Net model was used to identify dominating nucleotide features: 28 sequence features were identified.        
+        """
+    )
+    expander3.markdown(
+        """     
+                       
+        **An sgRNA activity model [Moreno et. al 2015](https://www.nature.com/articles/nmeth.3543) (CRISPR/Cas9/Cas9 nickase Knock-in):** 
+        
+        
+        - Sequence: 35 bp (6nt upstream flanking + 20nt sgRNA + 3nt PAM + 6nt downstream flanking)
+        -   Total Features: 684
+            -   Mononucleotides Features: 140
+                -   4 bases (A,C,G,T) × 35 nt (6nt upstream, 20nt sgRNA, 3nt PAM, 6nt downstream)
+                -   Dinucleotide Features: 16 dinucleotides × 34 positions (of 35 bp sequence)
+                -   Using randomized logistic regression on 684 features with regularization and **selected 91 features**.
+        
+        """
+    )
+    expander3.markdown(
+        """
+        **An sgRNA activity predictive model [Doench et. al 2016](https://www.nature.com/articles/nbt.3437): Rule set 2**
+        
+        **Using sgRNA design [Rule set 1](https://www.nature.com/articles/nbt.3026)** to create human and mouse genome-wide libraries, performed positive and negative selection screens to derive additional rules for improved sgRNA design. Also developed a metric to **predict off-target sites**.
+        -   **Features used (using one-hot encoding).** 
+            -   Position Specific features: 80 order 1 and 320 order 2 
+            -   Position-independent features: 4 order 1 and 16 order 2 
+        -   **GC Count Features:**
+            -   Number of Gs and Cs in the 20 mer
+            -   Number of Gs and Cs >10 
+        -   **PAM (NGGN) Features:**
+            -   16 features for the two nucleotides in the N and N positions
+        -   **Thermodynamic features:** Melting temperatures of the DNA version of the RNA guide sequence of the
+            -   Entire 30-mer target site plus context)
+            -   5 nucleotides immediately proximal to the PAM
+            -   8 nucleotides adjacent to that (away from the PAM)
+            -   5 nucleotides in turn adjacent to the 8 mer (again, away from the PAM)
+            
+        **A deep-learning-based (Convolutional Neural Network - CNN) based DeepCpf1 model for Cas12a/Cpf1 RNA [Kim et. al 2017](https://www.nature.com/articles/nmeth.4104):** 
+        
+        An automated feature engineering and prediction algorithm (based on data from 16,292 (experiment A) and 2,963 (experiment B) target sequences and 20-nt guide sequences) that automatically learn informative representations of target sequences relevant to Cpf1 activity profiles.
+        -   Input: 34-bp target sequence
+        -   One-hot encoding input layer: Representing each nucleotide A, C, G, and T as row number then 4-by-34 dimensional binary matrix represents the whole 34-bp target sequence. 
+        -   Convolution layer: 80 filters of length 5 and rectified linear unit (ReLU) to the convolution outputs.
+        -   The pooling layer: Computes the average in each of the non-overlapping windows of size 2, providing invariance to local shifts and reducing the number of parameters.
+        -   Three fully connected layers of 80, 40, and 40 units, chromatin accessibility integration layer and regression output layer.
+        -   The chromatin accessibility integration layer: It incorporates the sequence representations with the chromatin accessibility information of the target sequence
+        """
+    )
+    #expander3.markdown('Model scores f(s_{j}) will fall into the range [0,1], and higher values predict higher activity')
+    expander3.markdown('**Specificity (Off-Target Activity)**')
+    expander3.markdown('Cas9 nucleases often cleaves unintended genomic sites due to sgRNAs recognising DNA sequences with a few mismatches (off-target cleavage). Two main methods are used to predict cutting Specificity of sgRNA:')
+    expander3.markdown('- **Alignment-based methods:** sgRNAs are aligned to a given genome (often using traditional alignment tools such as Bowtie or BWA) and off-target sequences and sites are returned. This method is mainly used to find out all potential off-targets ***in-silico***')
+    expander3.markdown(
+    """        
+        - **Scoring-based methods:** sgRNAs are **further ranked** using identified off-targets from alignment process:
+            -   **Hypothesis-driven:** off-targets are scored based on the contribution of specific genome context factors (features such as those influencing the nonspecific binding of sgRNAs) **(MIT score)** and cutting frequency determination **(CFD score)** as sgRNA can also bind genome loci with non-canonical PAMs such as NAG, NCG and NGA.
+            -   **Learning-based:** sgRNAs are scored and predicted from a training model that considers the different features (including PAM type, nucleotide composition, GC content, chromatin structure, DNA methylation, RNA secondary structure, etc) affecting specificity.
+        - **An algorithm to predict off-target loci for specificity analyses [Hsu. et. al 2013](https://www.nature.com/articles/nbt.2647):**
+            -   Generally, specificity of SpCas9-mediated DNA cleavage is sequence- and locus-dependent and governed by the quantity, position and identity of mismatching bases.
+            -   Design guidelines to minimize off-target cleavage: 
+                -   Potential ‘off-target’ genomic sequences: should follow these four constraints:
+                    -   should not be followed by a PAM with either 5′-NGG or 5′-NAG sequences
+                    -   Their global sequence similarity to the target sequence should be minimized, and guide sequences with genomic off-target loci that have fewer than three mismatches should be avoided
+                    -   At least two mismatches should lie within the PAM-proximal region of the off-target site. 
+                    -   A maximal number of mismatches should be consecutive or spaced less than four bases apart.
+                **Off-target scoring.**
+        -   **Off-target mismatch [Stemmer et. al 2015](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124633) score [Doench et. al 2016](https://www.nature.com/articles/nbt.3437):** a value of 0 indicates no predicted off-target activity whereas a value of 1 indicates a perfect match
+            -   Off-target search
+                -   The search of off-target sites is carried out using Bowtie
+            -   For each off-target site of any sgRNA a score is computed that indicates the likelihood of a stable sgRNA/DNA heteroduplex and is quantified as in Eq. 1:
+            -   sgRNA target site score: The list of sgRNA target sites is ranked according to the number of predicted off-target sites and their potential deleterious effects on the respective off-target gene. The ranking is based on a single score that combines the number of off-target sites, the distribution of their mismatches and the distance to the closest annotated exon (Eq 2).
+        - 
+        """
+    )
+    expander3.markdown(off_target)
+    expander3.markdown("where pos is the position of each mismatch counted from the 5' end")
+    expander3.markdown(sgran_target_score)
+
+    #expander3.markdown('- An important feature of the SpCas9 system is the PAM, which is a CRISPR-dependent and conserved DNA sequence motif adjacent to the target site, and is used by bacteria to distinguish between self and non-self DNA (24). Therefore, target recognition requires both base pairing to the gRNA sequence and the presence of the PAM (i.e. 5′-NGG-3′) adjacent to the targeted sequence (1). When the Cas9 binds with PAM and the target site pairs with the gRNA, a double-strand break (DSB) is caused between positions 17 and 18 of the 20-nt gRNA sequence (Figure 3) (1). Following the break, random insertions or deletions (indels) can be generated via the non-homologous end-joining (NHEJ) pathway, which is error-prone (gene knockout). Alternatively, a desired modification can be introduced through homology-directed repair (HDR) when provided with a DNA template (gene knock-in) (30,31).')
+    #expander3.markdown('- The efficiency of DNA cleavage depends not only on the intrinsic nuclease activity, but also on target site accessibility and the affinity of DNA binding domain(s) (e.g. gRNA) to the target sequence. However, there is a lack of understanding on the exact behavior of the engineered Cas9 nuclease in living cells, especially regarding the dynamics of its interaction with DNA, and the cell cycle-dependent cleavage activity. Due to the limited biological knowledge, prediction of nuclease target accessibility and cleavage rates in living cells remains difficult. Therefore, experimental validation of target-site selection is necessary. Computational approaches can analyze and extract knowledge from large-scale CRISPR screens. Thus, they can help identify gRNA features modulating Cas9 activity as well as make plausible hypotheses regarding its mechanism of action.')
+    #expander3.markdown('- gRNA sequence features')
+    #expander3.markdown('- Protospacer adjacent motif')
+    #expander3.markdown('- gRNA sequence motifs')
+    #expander3.markdown('- Overall nucleotide usage, Position-specific nucleotide composition and Structural features')
+    
+    #expander3.markdown('TOOLS FOR GUIDE EFFICIENCY PREDICTION: ')
+    expander4 = st.expander("CRISPR-Cas9 and Base editor tools reviewed")
+    #st.header('CRISPR-Cas9 and Base editor tools reviewed')
+    expander4.markdown(
+    """
+    We have reviewed a total of ***6 tools*** in the public domain which are **at least semi-automated and reproducible** (no copy and pasting IDs or sequences one at a time). These tools offer a wide range of options ranging from **HDR** based edits to improved **single base editors** to precise base editing such as **Prime editing**. Furthermore, many of these tools offer **variety of PAM sequences expanding the number of available target sites for base editing.**
+    
+    - [BE-DICT](http://130.60.24.130/page-set?actionID=5f8c494b8c854d0029ffa9d3)
+        - An attention based deep learning algorithm for based editing outcomes prediction [Paper](https://www.nature.com/articles/s41467-021-25375-z).
+        - Options: ABE8e, ABEmax, BE4max, Target-AID.
+    - [ChopChop](https://chopchop.cbu.uib.no)
+        - This tool offers various Endonucleaes (Cas9, nCas9, Cpf1 (also known as Cas12a and **only contains crRNA**), CasX (generates staggered double-stranded break) and **Cas13 (also known as C2c2)) RNA editor**) and PAM options. Results for following options are reported in this app:
+        - Cas13a, CasX_TTCN, Cpf1_TTN, NGG (Cas9), Nickase_NGG, Nickase_NRG.
+    - [E-CRISP](http://www.e-crisp.org/E-CRISP/)
+        - This tool offers relaxed, medium and strict options for PAM sequence. 
+    - [GuideScan2](https://guidescan.com)
+        - This tool offers Cas9 and Cpf1 endonucleases with various options to filter out results. Results based on 30, 40 and 50bp (SNP location = (n/2)bp) input sequence range (for Cas9 and Cpf1) are reported in this app:
+        - 30bp_cpf1, 30bp_NGG, 40bp_cpf1, 40bp_NGG, 50bp_cpf1, 50bp_NGG
+    - [PnB Designer](https://fgcz-shiny.uzh.ch/PnBDesigner/)
+        - This tool allows base editing as well as **prime editing**. Results reported in this app are based on:
+        - Base_editing_guides, Nicking_guides, pegRNA_oligos
+    - [SNP_CRISPR](https://www.flyrnai.org/tools/snp_crispr/web/)
+        - This tool offers guides for  NGG and NAG PAM sequences and are reporoted in this app:
+        - NGG, NAG
+    **For more details on each tool, Please select select it from the sidebar menu under Tools Selection Menu**
+    """
+    )
+
+
+else:
+#if Calc == 'Selection Menu':
+    #ReadMe = st.sidebar.checkbox('ReadME',value=False)
+    select_variant = st.sidebar.selectbox(
+        "Please select variant",
+        variants_s
+    )
+
+    variant_spl=select_variant.split()
+    st.sidebar.write('Please select A method')
+    BE_DICT = st.sidebar.checkbox('BE-DICT',key=1)
+    if BE_DICT:
+        select_method_BEDICT='BE-DICT'
+        method_bedict = st.sidebar.radio(
+            "Please select an option",
+            ('bystander_ABE8e_mean', 'bystander_ABEmax_mean_5','bystander_BE4max_mean','bystander_Target-AID_mean'))
+
+    ChopChop = st.sidebar.checkbox('ChopChop',key=2)
+    if ChopChop:
+        select_method_ChopChop='ChopChop'
+        method_chopchop = st.sidebar.radio(
+            "Please select an option",
+            ('Cas13a', 'CasX_TTCN','Cpf1_TTN','CRISPR-CAS9_NGG', 'Nickase_NGG','Nickase_NRG'))
+
+    ECRISP = st.sidebar.checkbox('E-CRISP',key=3)
+    if ECRISP:
+        ecrisp('E-CRISP')
+        #select_method_ChopChop='ChopChop'
+        #method_chopchop = st.sidebar.radio(
+        #    "Please select an option",
+        #    ('Cas13a', 'CasX_TTCN','Cpf1_TTN','CRISPR-CAS9_NGG', 'Nickase_NGG','Nickase_NRG'))
+
+
+    GuideScan2 = st.sidebar.checkbox('GuideScan2',key=4)
+    if GuideScan2:
+        select_method_GuideScan2='GuideScan2'
+        method_GuideScan2 = st.sidebar.radio(
+            "Please select an option",
+            ('30bp_cpf1', '30bp_NGG','40bp_cpf1', '40bp_NGG','50bp_cpf1', '50bp_NGG'))
+
+    PnBDesigner = st.sidebar.checkbox('PnB Designer',key=5)
+    if PnBDesigner:
+        select_method_PnBDesigner='PnB Designer'
+        method_PnBDesigner = st.sidebar.radio(
+            "Please select an option",
+            ('Base_editing_guides', 'Nicking_guides_PE3_PE3b','pegRNA_oligos'))
+
+    SNPCRISPR = st.sidebar.checkbox('SNP_CRISPR',key=6)
+    if SNPCRISPR:
+        select_method_SNPCRISPR='SNP_CRISPR'
+        method_SNPCRISPR = st.sidebar.radio(
+            "Please select an option",
+            ('NAG', 'NGG'))
+    
+    
+
+    if BE_DICT and select_method_BEDICT == "BE-DICT":
+        BEDICT(method_bedict,select_method_BEDICT)
+
+    if ChopChop and select_method_ChopChop == "ChopChop":
+        Chopchop(method_chopchop,select_method_ChopChop)
+
+    if GuideScan2 and select_method_GuideScan2 == "GuideScan2":
+        Guidescan2(method_GuideScan2,select_method_GuideScan2)
+
+    if PnBDesigner and select_method_PnBDesigner=='PnB Designer':
+        Pnbdesigner(method_PnBDesigner,select_method_PnBDesigner)
+
+    if SNPCRISPR and select_method_SNPCRISPR=='SNP_CRISPR':
+        SNPcrispr(method_SNPCRISPR,select_method_SNPCRISPR)
+            
+st.sidebar.image("DataTecnica_White.png", use_column_width=True)

data/ChopChop/ChopChop_CasX_TTCN.csv

@@ -0,0 +1,335 @@
+snp_id	Rank	Target sequence	Genomic location	Strand	GC content (%)	Self-complementarity	Efficiency	MM0	MM1	MM2	MM3
+rs12726330	1	TTCCCAGTACCCTGGTCCAGACCT	chr1:155135679	-	60	2	0	0	0	0	2
+rs76763715	1	TTCTAGGGTAAGGACAAAGGCAAA	chr1:155235843	+	45	0	0	1	2	1	3
+rs71630614	1	TTCTGTCACCTCTGGTTAGGAGCT	chr1:156102418	+	55	0	0	0	0	0	3
+rs71630614	2	TTCAGTCCTGGTTCTGTCACCTCT	chr1:156102407	+	55	0	0	0	0	0	15
+rs4575098	1	TTCAATGTATTAACATTTTATTGG	chr1:161185592	-	20	0	0	0	1	2	26
+rs7537669	1	TTCATTATTATCATGTCTGTGATA	chr1:207702182	+	25	0	0	3	0	7	60
+rs1171832	1	TTCACCAAGATGGCTGCTTTTAGC	chr10:59908036	+	50	0	0	0	0	0	3
+rs188789342	1	TTCCTGAACAGGTGGCGGGCGCCT	chr10:119612801	+	70	1	0	0	0	0	0
+rs117896735	1	TTCAAGGCTGCAGTGAGCTATGAC	chr10:119776815	-	55	0	0	240	673	0	>=0
+rs11039212	1	TTCAGATCATGGTCATGTCATTTC	chr11:47371733	+	40	1	0	0	0	1	5
+rs11039212	2	TTCTGAGCAGGGAAATGACATGAC	chr11:47371744	-	50	0	0	0	2	8	38
+rs10769263	1	TTCCCCCTTTGATTTATTATAGCC	chr11:47395628	-	35	0	0	0	0	1	4
+rs10769263	2	TTCATGGCTATAATAAATCAAAGG	chr11:47395623	+	30	0	0	0	0	0	8
+rs1286170	1	TTCTTAACGTGTTCAGATGGTAGG	chr11:60064447	+	45	0	0	0	0	0	1
+rs1286170	2	TTCAGATGGTAGGTCAGCAGATCA	chr11:60064458	+	50	0	0	0	0	0	2
+rs580064	1	TTCACAGTGCTTTTTTATACAATG	chr11:60101639	+	30	0	0	0	171	121	>=3
+rs55661415	1	TTCTACCAACCTAACTACAAGGGA	chr11:60184833	+	45	0	0	0	0	0	2
+rs55661415	2	TTCTCCCTTGTAGTTAGGTTGGTA	chr11:60184836	-	45	0	0	0	0	1	2
+rs55661415	3	TTCCAGAGTCTGAATTCTACCAAC	chr11:60184819	+	40	0	0	0	0	0	8
+rs652303	1	TTCGGTTTGGGTAATAGCTCTCAG	chr11:60202554	-	45	0	0	0	0	0	4
+rs2044981	1	TTCATCTGAAAAACTATATAGTAT	chr11:60292522	+	20	0	0	0	0	1	18
+rs7945487	1	TTCGGTGTGTTCCCACCCAAGTCT	chr11:60322885	-	55	1	0	0	0	7	>=67
+rs572979	1	TTCCCGAAGTGCTGCGATTACAGG	chr11:86092226	-	55	0	0	1	287	60	>=0
+rs67598967	1	TTCTTAAGAATGACCAGGCCCGGC	chr11:86132156	-	60	0	0	0	0	0	1
+rs11603136	1	TTCAAACAGCATATATTGTAGAAC	chr11:86163275	+	30	0	0	0	0	0	16
+rs11603136	2	TTCTACAATATATGCTGTTTGAAT	chr11:86163274	-	25	0	0	0	0	1	16
+rs11223616	1	TTCATATAAGCCATGGGAGGGGCG	chr11:133902925	-	60	0	0	0	0	0	1
+rs564123	1	TTCCCCCTGTATTTGGGTTTCTCT	chr11:133949502	-	45	0	0	0	0	0	26
+rs539604877	1	TTCTCCTAATGCTATTCCCTCCCC	chr12:39726287	+	55	0	0	2	19	172	>=84
+rs893136227	1	TTCAAGCATCCACAATAGATTGGA	chr12:39936291	-	40	0	0	0	0	0	3
+rs893136227	2	TTCCAATCTATTGTGGATGCTTGA	chr12:39936290	+	35	0	0	0	1	0	4
+rs893136227	3	TTCTAGTTCAAGCATCCACAATAG	chr12:39936297	-	40	0	0	0	0	0	7
+rs1491942	1	TTCCAGGCTCCCCTGGGTTGTCAA	chr12:40227002	-	60	2	0	0	0	0	4
+rs28903073	1	TTCTGTCGACTAAATGTAAATCTT	chr12:40259704	+	30	0	0	0	0	0	2
+rs34637584	1	TTCTACAGCAGTACTGAGCAATGC	chr12:40340401	-	50	0	0	0	0	1	6
+rs75505347	1	TTCGTCTTACGATCATAATTGGAC	chr12:40491734	-	35	1	0	0	0	3	2
+rs1002038473	1	TTCCTAAAAAGTCCACATTTGGCT	chr12:41036427	-	35	0	0	0	0	1	5
+rs117027576	1	TTCTATGGAATTATTGGTGGCTCC	chr12:56922819	+	45	0	0	0	0	0	2
+rs117027576	2	TTCCATAGAATAAGTAACTTAACA	chr12:56922805	-	20	0	0	0	0	0	8
+rs113247976	1	TTCTGGCGGCCCCTTGGCTTCCTA	chr12:57581906	+	70	0	0	0	0	0	1
+rs113247976	2	TTCTGGTAGGAAGCCAAGGGGCCG	chr12:57581912	-	70	0	0	0	0	0	1
+rs116900480	1	TTCTTAACTCTTTGTCATGTAACT	chr12:58262313	+	30	0	0	0	0	1	14
+rs41292019	1	TTCCACGAAAGACATTTGCAGTAG	chr12:64455926	-	40	0	0	0	0	0	1
+rs12589020	1	TTCCCACGCTTCAGCTCTCTTGCT	chr14:52845268	+	55	0	0	0	0	1	5
+rs12589020	2	TTCAGCTCTCTTGCTGGTTATCTG	chr14:52845277	+	50	0	0	0	0	0	10
+rs61977311	1	TTCTACGATGCTCTATTTGGTCTC	chr14:92464101	-	45	0	0	0	0	0	1
+rs12590654	1	TTCTATGTGAAGTAACTCAGGAAC	chr14:92472511	-	40	0	0	0	69	335	>=17
+rs12590654	2	TTCCGTTCCTGAGTTACTTCACAT	chr14:92472507	+	40	0	0	2	86	462	>=7
+rs12590654	3	TTCCTGAGTTACTTCACATAGAAT	chr14:92472512	+	30	0	0	15	454	14	>=0
+rs3098199	1	TTCCTGAAGGAAAGAAAGCATGGA	chr15:50529047	-	40	2	0	0	0	1	27
+rs3098199	2	TTCTTTCCTTCAGGAAATCTTTAT	chr15:50529055	+	30	2	0	0	1	14	236
+rs3098199	3	TTCCTTCAGGAAATCTTTATTGAT	chr15:50529059	+	25	0	0	0	1	19	>=309
+rs7168776	1	TTCACAATATTTTCTTGATATCTT	chr15:58583182	+	20	0	0	0	0	7	61
+rs7168776	2	TTCTTTTTCACAATATTTTCTTGA	chr15:58583176	+	20	0	0	0	0	2	91
+rs7168776	3	TTCTTGATATCTTTGTTCATTTCT	chr15:58583193	+	25	0	0	0	0	15	217
+rs117618017	1	TTCACCATCGCCACCGAGCCGTTG	chr15:63277690	+	70	0	0	0	1	0	0
+rs11862962	1	TTCAAGTGATCCGCCCGCCTCATC	chr16:30898383	+	65	0	0	1	40	194	>=27
+rs8050588	1	TTCCCCGATCCCTACTGTGTGCTG	chr16:30926460	-	60	0	0	0	0	0	3
+rs28725459	1	TTCGAGACCAGCCTGACCAATATG	chr16:31121320	-	50	0	0	719	0	0	>=0
+rs1724425	1	TTCCACTCTTCCAGACAAATCCCT	chr17:45704379	+	45	0	0	1	0	0	8
+rs34186148	1	TTCTACCAAAGCGCTTTCTAGCTC	chr17:45777277	+	50	0	0	0	2	0	2
+rs3935637	1	TTCAGTACAGGTATATGTGTGTGG	chr17:45851196	-	45	0	0	1	1	2	8
+rs713522	1	TTCCCTGCCCCCTGCCCCCAGCAC	chr17:45987893	-	80	0	0	0	4	4	67
+rs8067056	1	TTCACCATGTTAGCCAGTCCAATT	chr17:46006580	-	45	0	0	1	1	6	199
+rs7225002	1	TTCTTCTGAGAATTGAGATGTCAT	chr17:46111681	-	35	0	0	2	0	1	10
+rs7225002	2	TTCTTTCTTCTGAGAATTGAGATG	chr17:46111685	-	35	0	0	1	1	0	16
+rs7225002	3	TTCTGAGAATTGAGATGTCATCTT	chr17:46111678	-	35	0	0	1	0	0	22
+rs7225002	4	TTCTCAGAAGAAAGAACATTGTAT	chr17:46111693	+	30	0	0	1	1	1	29
+rs916888	1	TTCCCTCTGACTGAGGTATAGTCT	chr17:46785757	-	45	1	0	1	1	0	2
+rs61572747	1	TTCAGGGTGTTTATGGAGGCTTTA	chr17:74019	-	45	0	0	29	3	7	34
+rs8067056	1	TTCCGGTTTGGAGCCTTTGATGTA	chr17:781795	-	45	0	0	0	0	0	4
+rs34186148	1	TTCCACCCCCGACCCATCCTGACA	chr17:1010915	+	65	0	0	2	0	0	2
+rs7207400	1	TTCACCATGTTGGCCAGGCTGGTC	chr17:1041114	+	65	0	0	1200	0	0	>=0
+rs1724425	1	TTCTCAGCTGTCTCCAGAGCGACT	chr17:1083560	+	60	0	0	2	0	1	6
+rs61572747	1	TTCAGGGTGTTTATGGAGGCTTTA	chr17:74019	-	45	0	0	29	3	7	34
+rs3935637	1	TTCTCCACTACACAGCAGCGTGCA	chr17:553319	-	60	0	0	0	4	0	6
+rs713522	1	TTCAGCGCAAAGTGCCAGACCCAA	chr17:690013	-	60	0	0	0	0	0	0
+rs4588066	1	TTCTTATATGTAAGCAGGGTTATA	chr18:43092983	+	30	0	0	0	0	1	3
+rs1141534	1	TTCTCGCCCTGGCGGGGAAGGTGA	chr19:1032677	+	75	1	0	0	0	1	13
+rs1141534	2	TTCCCCGCCAGGGCGAGAAGAGAC	chr19:1032672	-	70	1	0	0	10	3	0
+rs12975883	1	TTCAAGCGATTCTCCTGTCTCAGC	chr19:17643108	+	55	0	0	414	247	0	>=0
+rs80257887	1	TTCCCTGACCACTAGGGGTTGGGA	chr19:44516778	+	60	0	0	0	0	0	1
+rs112027066	1	TTCAGTTACCTCCTACCGGGTCCC	chr19:44625786	-	65	0	0	7	145	182	>=33
+rs203709	1	TTCCTGGGTTACAAGGTTGGAGCC	chr19:44658288	-	55	0	0	0	0	0	4
+rs111780744	1	TTCATTTAGCGTCTTGCTTCCATG	chr19:44663671	-	45	0	0	0	0	0	8
+rs2965163	1	TTCCGTGCCGGGCCTGCCTCAGAG	chr19:44697241	-	75	0	0	0	0	0	3
+rs2965164	1	TTCTTATGACCTGCATCCTGATGG	chr19:44698766	-	50	0	0	0	0	0	1
+rs111278137	1	TTCAAAAATAGAGACGGGATTTTG	chr19:44711801	-	35	0	0	0	0	3	16
+rs73037426	1	TTCCTCGGGGCCTTTGCACTGGCT	chr19:44719509	+	65	0	0	0	3	15	>=19
+rs150820726	1	TTCCATTCACCCTGCATGTGGCAG	chr19:44723884	-	55	0	0	0	0	0	5
+rs150820726	2	TTCACCCTGCATGTGGCAGCTGGG	chr19:44723879	-	70	1	0	0	0	0	7
+rs80307900	1	TTCCCCTCTAAAAGCTCATAAAGC	chr19:44731939	-	40	0	0	0	0	0	5
+rs2965102	1	TTCCATCCTGTGCAAAGGGAGGAC	chr19:44732690	+	55	1	0	0	0	0	2
+rs2965102	2	TTCCTCAGGTTCCATCCTGTGCAA	chr19:44732681	+	50	1	0	0	0	2	3
+rs12459810	1	TTCACCTCCTCCCTCCAAACCTCG	chr19:44746382	+	65	0	0	0	0	2	15
+rs10401176	1	TTCCCCGTCTGTGTGATGGGTTGG	chr19:44750229	+	60	0	0	0	0	2	3
+rs140414737	1	TTCCCAAGGGAGGTGGTAACTCTG	chr19:44770811	+	55	0	0	0	0	0	7
+rs2889414	1	TTCTAGACCAGCCTGATCAACATG	chr19:44794664	-	50	0	0	662	5	0	>=0
+rs2889414	2	TTCACCATGTTGATCAGGCTGGTC	chr19:44794659	+	55	0	0	671	211	0	>=0
+rs28534944	1	TTCTGGGCTCAAGTGATCCTCCCT	chr19:44797830	+	60	0	0	38	336	15	>=0
+rs111794050	1	TTCGTATTTTTCATAGAGACAGGG	chr19:44799501	+	35	0	0	5	82	164	>=0
+rs111794050	2	TTCATAGAGACAGGGTTTCACCAT	chr19:44799510	+	45	0	0	426	101	0	>=0
+rs1135062	1	TTCCACTTCGGCACCGGTGAGTGA	chr19:44819475	+	60	0	0	0	0	0	0
+rs1135062	2	TTCGGCACCGGTGAGTGACTGAGG	chr19:44819481	+	65	0	0	0	0	0	2
+rs34978331	1	TTCTTTCCTACCTCTTTTTTTCTT	chr19:44829583	+	30	0	0	0	6	177	>=317
+rs56394238	1	TTCTTTTTTGGGGGGATGGGGGGA	chr19:44832404	+	60	0	0	0	1	19	78
+rs1466435	1	TTCTCTTTACTTCCTGGAGCCCCA	chr19:44839537	-	55	0	0	0	0	0	13
+rs55840414	1	TTCGCAGTTTTATTAGAGACGGGG	chr19:44840301	-	45	0	0	0	0	82	>=200
+rs7255063	1	TTCCATTCCTACACGTGTCTCTGA	chr19:44849150	-	45	0	0	0	0	0	3
+rs7255063	2	TTCCTACACGTGTCTCTGACCCCA	chr19:44849145	-	55	0	0	0	0	0	5
+rs7255063	3	TTCTATCCTCTGATTCCATTCCTA	chr19:44849163	-	40	0	0	0	0	2	10
+rs35396326	1	TTCCAACACTTTGGGAGGCCGAGG	chr19:44853735	-	60	1	0	318	71	0	>=0
+rs365653	1	TTCTATCGCCCATGTTGGAGTGCA	chr19:44858378	+	55	0	0	1	7	244	>=139
+rs12978931	1	TTCGGCCCCAGAGACGGTTTGCAG	chr19:44860430	+	65	0	0	0	0	0	2
+rs12978931	2	TTCTGCTCACTGCAAACCGTCTCT	chr19:44860439	-	55	0	0	0	0	2	20
+rs138607350	1	TTCAGTGGCTTTAAGTATATTTGG	chr19:44860553	-	35	0	0	0	2	10	117
+rs41290100	1	TTCCATTCCTGGAACGCGCCCAGC	chr19:44867676	-	65	2	0	0	0	0	2
+rs41290100	2	TTCCTGGAACGCGCCCAGCTCCCA	chr19:44867671	-	70	2	0	0	0	0	3
+rs41290102	1	TTCTCCCCTCTCGTCCCAGCTCCC	chr19:44867920	-	75	0	0	0	2	0	28
+rs34278513	1	TTCCTCTTTGGCTCCGTGCCTTGG	chr19:44874879	-	60	0	0	0	0	1	2
+rs387976	1	TTCCTGAAGAGGTGTCTGTTTTCC	chr19:44875792	-	45	0	0	0	0	0	12
+rs73050293	1	TTCTGCAGGCATTATCTGAAGGCA	chr19:44876482	-	50	0	0	0	0	0	1
+rs73050293	2	TTCAGATAATGCCTGCAGAAACGT	chr19:44876486	+	45	0	0	0	0	0	18
+rs59007384	1	TTCAGTCCCCCCAACCCTGTCTGG	chr19:44893399	-	70	0	0	0	0	0	6
+rs10119	1	TTCCGGAATTGAGGGGCACGCAGG	chr19:44903412	+	65	0	0	2	1	1	0
+rs10119	2	TTCCGGAATCCCTCCCGGGACCCC	chr19:44903396	-	75	2	0	0	3	0	3
+rs75627662	1	TTCATTTTTTTTCTGCTGTCATTA	chr19:44910317	+	25	0	0	0	0	12	87
+rs72654437	1	TTCCCAGACCCCACAAGAATAGCA	chr19:44912829	-	50	0	0	0	0	0	8
+rs72654437	2	TTCTTGTGGGGTCTGGGAAGCAGA	chr19:44912834	+	60	1	0	0	0	1	12
+rs111789331	1	TTCTCATGCCTCAGCCTCCCAAGT	chr19:44923869	-	60	0	0	366	47	0	>=0
+rs139136389	1	TTCTCATGCCTCAGCCTCCCAAGT	chr19:44923869	-	60	0	0	366	3	0	>=0
+rs4803771	1	TTCAGCCTACTCATGTCCCTAAAA	chr19:44924382	+	45	0	0	0	0	0	6
+rs117664574	1	TTCCAAGGGGTCGAGTGGATGTTG	chr19:44924511	-	55	1	0	0	0	0	0
+rs7260330	1	TTCTATTTTTAATGTTTTGAGGAA	chr19:44932942	-	20	0	0	22	335	27	>=0
+rs4263041	1	TTCGTAAAGATGGAGTTTCACCAT	chr19:44935386	-	35	0	0	2	50	90	>=0
+rs4263041	2	TTCGAAACCAACCTGACCAACATG	chr19:44935365	+	45	0	0	29	625	56	>=0
+rs4263041	3	TTCACCATGTTGGTCAGGTTGGTT	chr19:44935370	-	50	1	0	33	667	20	>=0
+rs8102895	1	TTCTCCCAGCCCGTTTGTTTCCAC	chr19:44955183	-	60	0	0	0	0	1	9
+rs2239375	1	TTCAGGGACAGCTTAGGAAATGTT	chr19:44956581	+	45	0	0	0	0	0	4
+rs2239375	2	TTCCTAAGCTGTCCCTGAAGCCAG	chr19:44956576	-	55	0	0	0	0	0	4
+rs145639166	1	TTCCTTTGGCTAGAATGTCTTCAC	chr19:44965848	+	40	0	0	0	0	0	5
+rs145639166	2	TTCACATGGCCATGGCCAGCTGCA	chr19:44965867	+	65	3	0	0	0	2	41
+rs73558179	1	TTCCACCCCTCCACACCCCATCAC	chr19:44973243	-	65	0	0	0	0	4	14
+rs35577563	1	TTCAGGATCGAGAGGTTGGCAGGG	chr19:45001086	-	65	0	0	0	0	1	2
+rs35912475	1	TTCCTAGAGGTGATTAATGAGATT	chr19:45019475	-	30	0	0	0	0	5	22
+rs4803791	1	TTCCACGTCTCAGGCTTAAGTGAT	chr19:45020306	+	45	0	0	0	0	26	>=255
+rs142380271	1	TTCACCATGTTAGCCAGGCTGGTC	chr19:45021769	+	60	1	0	755	195	0	>=0
+rs142380271	2	TTCCAGACCAGCCTGGCTAACATG	chr19:45021774	-	55	2	0	757	442	0	>=0
+rs76856627	1	TTCTGTTTGTTGTAGCATACTGTG	chr19:45040481	+	40	0	0	0	0	1	2
+rs112481437	1	TTCCTCTGCACCATCCCTCCACCT	chr19:45045868	-	60	0	0	0	0	0	13
+rs112481437	2	TTCCTTCCTCTGCACCATCCCTCC	chr19:45045872	-	60	0	0	0	0	5	50
+rs143161810	1	TTCTCGTGCCCTCAGCCTCCTGAG	chr19:45063551	+	70	2	0	0	106	97	>=106
+rs143161810	2	TTCCAGCTACTCAGGAGGCTGAGG	chr19:45063560	-	60	0	0	642	21	0	>=0
+rs7251911	1	TTCCAAGCCTGCGAGCCAGCCCGC	chr19:45079136	+	75	0	0	0	0	0	0
+rs118062675	1	TTCGAGATGAGTCTTGCTCTGTCG	chr19:45086863	+	50	0	0	0	0	6	>=30
+rs76271385	1	TTCAGCAAGTGACCAATGACCCCA	chr19:45109580	-	55	0	0	0	0	0	3
+rs76271385	2	TTCTGCCATCTTCAGCAAGTGACC	chr19:45109590	-	55	0	0	0	0	3	8
+rs145903417	1	TTCTGGCCTCAGACCTCTTCGTCC	chr19:45125847	+	65	0	0	0	0	0	4
+rs79018068	1	TTCCATGCACAATTTCACTTGGCC	chr19:45131572	-	45	0	0	0	0	1	9
+rs75463276	1	TTCAAGTCCTAGCCCCTGGCTCAG	chr19:45135575	-	65	0	0	0	0	1	9
+rs78073763	1	TTCCCTTTTTCCGGTCGGTCTGCG	chr19:45146571	+	60	0	0	0	0	0	0
+rs78073763	2	TTCCGGTCGGTCTGCGATGAGCTG	chr19:45146579	+	65	0	0	0	0	0	1
+rs1005451	1	TTCAACCCCCAACAGTAAGAAAGG	chr19:45148815	-	50	0	0	0	0	0	3
+rs1005451	2	TTCTTACTGTTGGGGGTTGAATTG	chr19:45148818	+	45	0	0	0	0	2	7
+rs12460985	1	TTCTCACAGTCGAGCAGCTTCCTC	chr19:45187623	-	60	0	0	0	0	0	1
+rs62118471	1	TTCCAGGACCCCCACTGATGCCCC	chr19:45187776	+	70	0	0	0	0	0	7
+rs62118471	2	TTCCTTCCAGGACCCCCACTGATG	chr19:45187772	+	60	0	0	0	0	1	18
+rs149495476	1	TTCTCATGTTGTTTGTATATTGGT	chr19:45193374	+	30	0	0	0	0	0	25
+rs73566243	1	TTCCTTTTGCTGTGTAGTCACTGA	chr19:45193744	+	40	0	0	0	0	0	13
+rs73566243	2	TTCAGTGACTACACAGCAAAAGGA	chr19:45193745	-	45	0	0	0	0	1	13
+rs117783785	1	TTCTGATTAGAATGCTCTCCAAGA	chr19:45195918	-	40	0	0	0	0	1	6
+rs117783785	2	TTCTAATCAGAATGAAAAACAGCT	chr19:45195930	+	30	0	0	0	0	3	21
+rs117783785	3	TTCATTCTGATTAGAATGCTCTCC	chr19:45195922	-	40	0	0	0	0	4	66
+rs2627642	1	TTCATTAAGCCTCTTTTTCTTTAT	chr19:45202298	+	25	0	0	4	127	60	>=13
+rs2627642	2	TTCTTTATTAATTACCCAGTCTCA	chr19:45202314	+	30	0	0	40	540	26	>=0
+rs185181700	1	TTCTGAGCCCAGCAAGGCACCAGG	chr19:45203194	+	70	0	0	0	0	5	19
+rs185181700	2	TTCTGGGCAAGTCCTGGTGCCTTG	chr19:45203206	-	65	0	0	0	0	8	23
+rs11667509	1	TTCTGTACAGGGAGTTTGGGGTTG	chr19:45212910	+	55	0	0	0	0	0	3
+rs11667509	2	TTCACCCAACCCCAAACTCCCTGT	chr19:45212916	-	60	0	0	0	0	1	18
+rs346751	1	TTCTAGGCTCTTAAGTAGCATTGA	chr19:45231155	+	40	0	0	0	0	0	0
+rs346751	2	TTCCAGCCACAGAAATCAGTCAAT	chr19:45231174	-	40	0	0	0	1	2	51
+rs346750	1	TTCTAGGACTGCAAGCGTCCATGG	chr19:45233961	+	60	1	0	0	0	1	3
+rs345421	1	TTCACTCCTCCTGTCCCCTCCCCC	chr19:45266489	-	75	0	0	0	0	12	148
+rs12973246	1	TTCTCGGTCCCGGCAAGGAGCGAT	chr19:45332932	-	70	0	0	0	0	0	0
+rs12973246	2	TTCTCTTTCTCGGTCCCGGCAAGG	chr19:45332938	-	65	0	0	0	0	0	1
+rs77988534	1	TTCACCCTCATACCCACAGCCTGA	chr19:45341241	-	60	0	0	0	0	1	12
+rs10423015	1	TTCTGTGGTTTGCACTTGTGTATC	chr19:45451771	+	45	0	0	0	0	1	11
+rs76763715	1	TTCTTAAGTGGGACAACTACAAGT	chr1:40843	-	40	0	0	2	0	0	5
+rs76763715	2	TTCTTTGTTTCTTAAGTGGGACAA	chr1:40851	-	35	0	0	2	0	2	18
+rs75548401	1	TTCCCCTCATGTTTATCCAGTGCT	chr1:41249	+	45	0	0	1	1	0	6
+rs55636820	1	TTCAGAACCACCCGGGGCACTTGG	chr2:127054667	+	70	0	0	0	0	0	2
+rs55636820	2	TTCGGGGGCTTCAGAACCACCCGG	chr2:127054658	+	70	0	0	0	0	0	2
+rs1060743	1	TTCTTTTTGGCAGTTTGAAGGGAC	chr2:127068946	+	45	0	0	0	0	0	4
+rs1060743	2	TTCAAACTGCCAAAAAGAAGGATG	chr2:127068941	-	40	0	0	0	0	0	8
+rs1060743	3	TTCATCCTTCTTTTTGGCAGTTTG	chr2:127068939	+	40	0	0	0	0	1	26
+rs11693422	1	TTCAGCGTTCCCTCATGCTCAGAG	chr2:127084583	+	60	0	0	0	0	0	2
+rs7594230	1	TTCATAGCTTGTGGGCGTGTTGAT	chr2:127115984	-	50	0	0	0	0	0	1
+rs58682665	1	TTCAGTGTTGAATCTTCCAACCTA	chr2:127127668	+	40	1	0	0	0	1	6
+rs58682665	2	TTCAACACTGAAAAGATGTCAGTT	chr2:127127656	-	35	0	0	0	0	3	25
+rs58682665	3	TTCATAGGTTGGAAGATTCAACAC	chr2:127127672	-	40	0	0	0	2	6	78
+rs57891859	1	TTCCCAAGCACACCCACAGGGAGC	chr2:134707041	+	65	0	0	0	0	0	5
+rs6705834	1	TTCTTCCCCATGTATTATCCCCAA	chr2:233113096	+	45	0	0	0	0	0	3
+rs6705834	2	TTCCCCATGTATTATCCCCAAGAA	chr2:233113099	+	40	0	0	0	0	0	6
+rs6127744	1	TTCTTCCAAGCCAGGCTCAAGTTC	chr20:56411205	-	55	1	0	0	0	0	5
+rs6127744	2	TTCCAAGCCAGGCTCAAGTTCTAT	chr20:56411202	-	45	1	0	0	0	1	4
+rs73177394	1	TTCACCGTAGTTGGAATTTTCCCC	chr3:182990293	+	50	1	0	0	0	0	2
+rs73177394	2	TTCCAACTACGGTGAAGTTACAAG	chr3:182990285	-	40	0	0	0	0	1	2
+rs6599388	1	TTCCCCAGGCCCCCGCCGTCTCTG	chr4:945284	+	80	0	0	0	0	0	0
+rs6599388	2	TTCTGTTTCCCCAGGCCCCCGCCG	chr4:945278	+	80	0	0	0	0	0	4
+rs3733344	1	TTCCCGATGTTGAAGGACGACACT	chr4:957252	+	50	0	0	0	0	0	0
+rs3733344	2	TTCACTTCCCGATGTTGAAGGACG	chr4:957247	+	55	1	0	0	0	0	0
+rs3733344	3	TTCAACATCGGGAAGTGAAGGACA	chr4:957242	-	50	0	0	0	0	0	2
+rs34311866	1	TTCCAGCTGGCCATGTGGACCACG	chr4:958146	+	65	1	0	0	0	0	2
+rs17783233	1	TTCTAAAATGTGTCCCCAGGGTTT	chr4:982811	-	45	0	0	0	0	0	6
+rs4373155	1	TTCTGCATACACACAGACCAGCTT	chr4:11021160	-	50	1	0	0	0	2	2
+rs9291637	1	TTCCCCTCCTGGTGGCTTGGAACT	chr4:15722024	+	60	0	0	0	0	0	3
+rs9291637	2	TTCCAAGCCACCAGGAGGGGAAGG	chr4:15722022	-	65	0	0	0	0	0	4
+rs9291637	3	TTCCCTTCCCCTCCTGGTGGCTTG	chr4:15722019	+	65	0	0	0	0	0	6
+rs12640185	1	TTCTATATCCCAAATTTTCTTTTT	chr4:76211188	-	20	0	0	0	2	8	78
+rs6811535	1	TTCTTTCTTTTTTTTTGAGACGGA	chr4:76277482	-	30	0	0	136	147	22	>=0
+rs6811535	2	TTCTTTTTTTTTGAGACGGAGTCT	chr4:76277478	-	35	0	0	352	33	0	>=0
+rs1430961	1	TTCAAACTACATAAAACCTTGAGT	chr4:89631745	+	30	0	0	0	0	0	4
+rs1430961	2	TTCAACTATTACTCAAGGTTTTAT	chr4:89631755	-	25	0	0	0	0	0	8
+rs72657707	1	TTCAGTGAACAATGAAAGTGCCTG	chr4:89657351	+	45	0	0	0	0	0	9
+rs72657707	2	TTCACTGAATCTTAAAATTATGGA	chr4:89657336	-	25	0	0	0	0	1	17
+rs72657707	3	TTCATTGTTCACTGAATCTTAAAA	chr4:89657343	-	25	0	0	0	0	1	17
+rs114088559	1	TTCCGTGGCTTGTGGCTCCCTACC	chr4:89689153	+	65	0	0	0	0	15	44
+rs3933594	1	TTCCCCGCCCTGTGTCCAAGTGTT	chr4:89715250	-	60	0	0	277	69	1	>=0
+rs72503734	1	TTCATACCGGGGATGCAGGGTTGC	chr4:89778608	+	65	0	0	0	0	21	>=285
+rs10516853	1	TTCACGATATCAAACAAAAACATT	chr4:89945666	+	25	0	0	0	0	1	6
+rs10514906	1	TTCACAGTAAGATCCAGTTGTATT	chr5:61178743	-	35	0	0	0	0	0	6
+rs1980493	1	TTCTCAACATGCGCTCCCATGGCT	chr6:32395424	+	60	0	0	7	1	0	3
+rs9268544	1	TTCTCATCACACGAGAATAACAGC	chr6:32417664	-	45	1	0	4	3	0	2
+rs9268544	2	TTCTCGTGTGATGAGAATCTCAAG	chr6:32417671	+	45	1	0	3	4	0	4
+rs149839148	1	TTCATTGTTGGAAAAAAAATATCA	chr6:32613945	+	20	0	0	0	1	4	47
+rs510205	1	TTCCCACCGCATGTATTTCCCCCC	chr6:32616917	+	60	0	0	3	2	7	16
+rs510205	2	TTCTCACTCTGGTAACATCTTCCC	chr6:32616898	+	50	0	0	12	38	32	21
+rs2858331	1	TTCCAAAAAAGGAATATTGCTCCA	chr6:32713487	+	30	0	0	4	2	0	13
+rs2858331	2	TTCCTTTTTTGGAACTTTACTTCT	chr6:32713477	-	25	1	0	4	0	1	41
+rs3957148	1	TTCAAGTTAACTACTACTGCATTT	chr6:32714345	+	30	0	0	3	3	1	8
+rs9275614	1	TTCTGCATTGCCATAAGGACATTT	chr6:32716474	+	40	0	0	6	0	3	7
+rs9395259	1	TTCACCATGTTAGCCAGGCTGGTC	chr6:47440232	-	60	1	0	755	3	0	>=0
+rs9395259	2	TTCGAGACCAGCCTGGCTAACATG	chr6:47440227	+	55	2	0	758	166	0	>=0
+rs1967688	1	TTCATTGCTATAAAGAAGTATTTT	chr6:3704516	-	20	0	0	0	0	9	71
+rs1967688	2	TTCTGTATTAGTTAGTTCTTTCAT	chr6:3704535	-	25	0	0	0	0	17	78
+rs1967688	3	TTCTTTATAGCAATGAAAGAACTA	chr6:3704523	+	25	0	0	0	5	141	>=216
+rs1967688	4	TTCTTTCATTGCTATAAAGAAGTA	chr6:3704520	-	25	0	0	1	54	295	>=10
+rs1980493	1	TTCTGAAAACCAAAGCAACAAGGT	chr6:3727661	+	40	0	0	0	0	0	4
+rs3806157	1	TTCCCGACATCTCATTACAGATGA	chr6:3738246	-	40	0	0	0	0	0	6
+rs9268840	1	TTCACCCCATGGGGTGGTGGAGTA	chr6:3793265	+	65	1	0	0	0	0	2
+rs1980493	1	TTCCCCAGTGCATCCTGTGTTTTA	chr6:3833526	+	45	0	0	0	0	1	13
+rs9268544	1	TTCATTAAAATAAACCAGGAAATG	chr6:3855753	+	25	0	0	0	0	12	36
+rs149839148	1	TTCTACTTTCATTTATAATTGGGG	chr6:4032347	-	30	0	0	0	0	2	19
+rs149839148	2	TTCATTTATAATTGGGGATTTTTT	chr6:4032340	-	20	0	0	0	0	3	41
+rs9275111	1	TTCAAGGTGTTACAGGCTCAACAA	chr6:4095276	+	45	0	0	0	0	2	8
+rs2858331	1	TTCTAAGAGCCACTGAAAGTATGT	chr6:4126772	+	40	0	0	0	0	0	7
+rs2858331	2	TTCTTTATTCTAAGAGCCACTGAA	chr6:4126765	+	35	0	0	0	0	0	11
+rs1967688	1	TTCTTACAACGAAGTAATTGGACT	chr6:3613388	-	35	0	0	0	0	0	2
+rs1967688	2	TTCCTTCTTACAACGAAGTAATTG	chr6:3613392	-	30	1	0	0	0	0	3
+rs1967688	3	TTCGTTGTAAGAAGGAACAAGTTA	chr6:3613399	+	30	0	0	0	0	0	12
+rs3806157	1	TTCACCAACAGTGCACGAGGTGCC	chr6:3647080	+	65	1	0	0	0	0	1
+rs3806157	2	TTCATGGGCACCTCGTGCACTGTT	chr6:3647086	-	60	1	0	0	0	0	2
+rs9268544	1	TTCTACAAGGAGGCAGTGACTCTA	chr6:3657967	+	50	0	0	0	0	0	5
+rs482044	1	TTCTGTTAATGTTGATATTTTACC	chr6:3846648	+	25	0	0	0	4	48	>=38
+rs482044	2	TTCTTCCAAACTTCTGTTAATGTT	chr6:3846637	+	30	0	0	34	283	13	>=0
+rs482044	3	TTCCAAACTTCTGTTAATGTTGAT	chr6:3846640	+	25	0	0	23	292	38	>=0
+rs149839148	1	TTCCCAATTCAAAGGTCACACCCA	chr6:3852323	+	45	0	0	0	0	0	4
+rs1967688	1	TTCAGCTGTTCTGCTCTGGTTTCT	chr6:3677269	+	50	0	0	7	314	9	>=0
+rs1967688	2	TTCTGCTCTGGTTTCTCCCCATCT	chr6:3677277	+	55	0	0	307	4	0	>=0
+rs1980493	1	TTCGCGTGGGTTGCCTCCTCTAAC	chr6:3700423	+	60	0	0	0	0	0	3
+rs3806157	1	TTCTAGATCAATCTCTAATATGGA	chr6:3711018	+	30	0	0	0	0	0	5
+rs9268544	1	TTCACTGAAGAAGTTTTACTGTTA	chr6:3721911	-	30	0	0	0	0	0	13
+rs9268840	1	TTCAGACAGAAGGGTGACGTGGGA	chr6:3765255	-	60	0	0	0	0	0	1
+rs9268840	2	TTCTGTCTGAAACAAATAATCACG	chr6:3765268	+	35	0	0	0	0	0	4
+rs482044	1	TTCACCTAACTTCTAATCTCCACA	chr6:4021039	+	40	0	0	0	0	0	5
+rs482044	2	TTCTAATCTCCACAGCCAATCAGT	chr6:4021049	+	45	0	0	0	0	0	7
+rs482044	3	TTCCAAGAACTGATTGGCTGTGGA	chr6:4021057	-	45	1	0	0	0	1	12
+rs149839148	1	TTCTGCTCATATAGTGCTTACATT	chr6:4026710	+	35	0	0	0	0	0	8
+rs33915496	1	TTCTAGGAGTGGGTAGTTGAGAGA	chr6:4028944	-	50	0	0	0	0	0	5
+rs9275111	1	TTCGGTACAGGACAGGTGGGAGGA	chr6:4101484	+	60	0	0	0	0	0	3
+rs3957148	1	TTCAGCTGCACATGAATAGAACAG	chr6:4133659	-	45	0	0	0	0	0	1
+rs3957148	2	TTCTATTCATGTGCAGCTGAACTA	chr6:4133662	+	40	0	0	0	0	0	10
+rs3957148	3	TTCTGACTGGCTCTCATTGCTGTT	chr6:4133640	+	50	0	0	0	0	1	20
+rs1980493	1	TTCTCCCCAGTATTCTAGATCGGA	chr6:3737183	-	50	0	0	0	0	0	0
+rs1980493	2	TTCTAGATCGGAAGTTGTGCTCAC	chr6:3737171	-	50	0	0	0	0	0	0
+rs1980493	3	TTCCGATCTAGAATACTGGGGAGA	chr6:3737182	+	45	0	0	0	0	0	3
+rs3806157	1	TTCTGGTTGGGAGAAATCCAATAG	chr6:3747780	-	45	0	0	0	0	0	4
+rs9268840	1	TTCCATTCCTTACAGTTGGTAGTA	chr6:3801888	-	35	0	0	0	0	0	2
+rs3957148	1	TTCAGGATACAAAATCAACATACA	chr6:4013074	+	30	0	0	136	143	18	>=0
+rs1967688	1	TTCTATCCTGGCTTGTGGCCGGGC	chr6:3595331	-	70	0	0	0	0	0	1
+rs1967688	2	TTCAGGCACAGCCCGGCCACAAGC	chr6:3595321	+	75	0	0	0	0	0	1
+rs1967688	3	TTCCTCTTTCTATCCTGGCTTGTG	chr6:3595338	-	45	0	0	0	0	1	16
+rs1980493	1	TTCACTGCAACCTTGAACACCTGG	chr6:3618475	+	55	0	0	1	54	93	>=12
+rs1980493	2	TTCAAGGTTGCAGTGAACTGTGAT	chr6:3618468	-	45	1	0	21	302	161	>=0
+rs3806157	1	TTCCCACACACGTCTCATTTCCAA	chr6:3629046	+	45	0	0	0	0	0	6
+rs3806157	2	TTCCAAGCACCAGCAGCAGACAGT	chr6:3629064	+	55	0	0	0	0	1	5
+rs9268544	1	TTCCTCCAAGATCAGTAACAAGAC	chr6:3640712	+	40	0	0	0	12	139	>=242
+rs9268840	1	TTCTTGGCTGTGATTTTTAAAGGC	chr6:3684097	+	40	0	0	0	0	0	17
+rs482044	1	TTCTTGCCAAGGTACTATGAAGCC	chr6:3807636	-	50	1	0	0	0	0	1
+rs149839148	1	TTCCTCCCCTGGCTGCTTTCCTCT	chr6:3813315	+	60	0	0	0	0	0	32
+rs9275111	1	TTCAGGGCTAAAGTCTTCTTTTCC	chr6:3876244	+	45	0	0	0	0	0	4
+rs2858331	1	TTCCAGGCTATAGGTAAATTTAAA	chr6:3907736	-	25	0	0	180	121	7	>=0
+rs3957148	1	TTCATAGAGAGAAGCGCACACATC	chr6:3908603	-	50	0	0	0	0	1	4
+rs9275614	1	TTCAGAGAAATCAGCTTGTTCACA	chr6:3910721	-	40	0	0	0	0	0	4
+rs9268840	1	TTCCCATAGACACTGATGTAGTAG	chr6:3776298	-	40	0	0	0	0	0	7
+rs482044	1	TTCCTACATTAAAGCTTAGGGTTT	chr6:4010375	-	30	1	0	0	0	0	6
+rs149839148	1	TTCAGTCTCTATCTTGGTAAGTAG	chr6:4016007	+	40	0	0	0	0	0	7
+rs9275111	1	TTCAGAACTCAAACTGATTCCTGA	chr6:4081904	+	40	0	0	0	0	0	7
+rs9275111	2	TTCTGTTATTTCAGAACTCAAACT	chr6:4081895	+	30	0	0	0	0	1	12
+rs2858331	1	TTCCTAAACAGTCTCACTGCAGCT	chr6:4113615	+	45	1	0	0	0	0	7
+rs2858331	2	TTCATTTCCTAAACAGTCTCACTG	chr6:4113610	+	40	1	0	0	0	0	10
+rs1987580	1	TTCAAAAAATTAGCCAAGCATGGT	chr7:99972959	+	35	0	0	0	85	12	>=0
+rs3735242	1	TTCAAGGACAAGAGTGAGCCCATC	chr7:100174227	+	55	0	0	0	0	0	1
+rs11767557	1	TTCCCTATAGAGATGCCCTAAGAC	chr7:143412046	+	45	0	0	0	0	0	2
+rs11767557	2	TTCGATGCTGGGCAGTATTCCCTA	chr7:143412029	+	50	0	0	0	0	1	2
+rs620490	1	TTCTTGGTTGGGGATTGAGTGGGC	chr8:16840063	+	60	0	0	0	0	0	4
+rs620490	2	TTCAATTCTTGGTTGGGGATTGAG	chr8:16840058	+	45	0	0	0	0	0	5
+rs620490	3	TTCTGCCCACTCAATCCCCAACCA	chr8:16840067	-	60	0	0	0	0	0	7
+rs755951	1	TTCACTGGCATGTAGGGGGACCTG	chr8:27369264	+	65	0	0	0	0	0	2
+rs2565048	1	TTCTATAGATTTGCCTATTCTGCA	chr8:27472592	-	35	0	0	0	22	132	>=16
+rs2565048	2	TTCTGTTTCTATAGATTTGCCTAT	chr8:27472598	-	30	0	0	14	238	78	>=3
+rs7831810	1	TTCGAGGACAGGAGCATTCCACGG	chr8:27572977	+	60	0	0	0	0	1	0
+rs9331950	1	TTCTAAGCTATAAATTTACATGTG	chr8:27597159	+	25	0	0	0	0	0	18
+rs78752429	1	TTCTCTTGCTGCTGCCGTATAAGA	chr9:27466675	-	50	0	0	0	18	234	>=45
+rs78752429	2	TTCTTATACGGCAGCAGCAAGAGA	chr9:27466674	+	50	0	0	0	20	268	>=25
+rs12552327	1	TTCAGAAGTTCTTCCTGCTGTACA	chr9:27469551	-	45	1	0	0	0	0	8
+rs12552327	2	TTCTGAACATCAGTTAATTCAATA	chr9:27469568	+	25	0	0	0	0	1	8
+rs4879515	1	TTCCCGTCCTTTAATGTTAGGTCT	chr9:27482219	-	40	0	0	0	0	1	0
+rs147599399	1	TTCCCAGATATTTGTTATTGGTTA	chr9:27543624	+	25	0	0	0	0	0	12
+rs17696570	1	TTCTAAAATCATTTTTGAGACTCT	chr9:27558433	-	25	0	0	0	1	2	32
+rs10812619	1	TTCAAGCTAAGTATTTTAAAAGTT	chr9:27569179	+	20	0	0	0	0	2	32
+rs11795154	1	TTCACAATAGCAAAGACTTGGAAC	chr9:27577614	+	40	0	0	612	5	0	>=0
+rs11795154	2	TTCCAAGTCTTTGCTATTGTGAAT	chr9:27577613	-	30	0	0	619	18	0	>=0
+rs7854467	1	TTCTGAAACTATTGAGATGATCAT	chr9:27593166	-	30	0	0	2	45	330	>=2

data/ChopChop/ChopChop_Nickase_NGG.csv

@@ -0,0 +1,301 @@
+snp_id	Rank	Target sequence	Genomic location	Cluster	Off-target pairs	Off-targets MM0	Off-targets MM1	Off-targets MM2	Off-targets MM3	Restriction sites	Best ID
+rs147288664	1	AGACTCATGCTGACCATAGCTGG*AAGACTGACGTGAGCTGGAG*CCATGTTGGCCAGAGCTTGATGC	chr1:152220414	1	0	1/0	8/0	4/1	12/16	BmgBI:10	1
+rs12726330	1	GAAGGGGACTGACCGGGACATGG*AAGAGGTCTGGA*CCAGGGTACTGGGAAGGCGCTCG	chr1:155135653	1	0	0/0	0/0	0/0	12/10	Hpy188III:9	1
+rs12726330	2	CCGCGGAGCCCTAGGAAGGGGAC*TGACCGGGACATGGAAGAGGTCTGGACCAG*GGTACTGGGAAGGCGCTCGGAGG	chr1:155135639	2	0	0/0	0/0	3/1	11/9	ScrFI:6;AvaII:25;MboII:27;BslI:11;NciI:6;StyD4I:4;EarI:10;BsmFI:21;Hpy188III:23;Sau96I:25	2
+rs12726330	3	CCAGGGTACTGGGAAGGCGCTCG*GAGGAGAGGGG*CGCGAGTTCCGGTTCGGCGTCGG	chr1:155135688	3	0	0/0	0/1	0/130	10/>=164		5
+rs75548401	1	TGAGGTCTGCTTTGCAGGAAGGG*AGACTGGGGTGGCTTA*CCGTGATGATGCTGTGGCTGTAC	chr1:155236205	1	1	1/1	2/0	1/1	18/14	BsrI:9;BmrI:14	1
+rs75548401	2	GGCTTACCGTGATGATGCTGTGG*CTGTACTGCAT*CCCTCGATCCCAGGAGCCTAGCC	chr1:155236238	2	3	1/4	2/0	0/0	4/7		2
+rs71630614	1	GCAGACACCCAGGCAGGGCAAGG*GCACCCAGGTTTCAGTCCTGGTTCTGTCA*CCTCTGGTTAGGAGCTGTGAGCA	chr1:156102374	1	0	0/0	1/0	6/2	66/12	BsaJI:5;StyD4I:5,17;BstNI:7,19;ScrFI:7,19;PspGI:5,17	1
+rs188789342	1	AGTACTGTTTCCTGAACAGGTGG*CGGGCGCCTGTAATC*CCAGCTACTCAGGAGGCTGAGGC	chr10:119612793	1	0	0/1164	0/36	0/0	11/>=0	SfoI:6;NlaIV:6;PluTI:8;BanI:4;HaeII:8;BsaHI:5;KasI:4;NarI:5	1
+rs202122669	1	GAATAGATGTTGCCGATAAATGG*CAGCCCCGGCGGCC*CCGGGGGGAAGCCCATCGGCCGC	chr11:14892045	2	0	0/0	0/0	2/0	5/2	NciI:7;StyD4I:5;ScrFI:7;MwoI:10;BsaJI:5;BglI:10;Fnu4HI:11	1
+rs202122669	2	GAATAGATGTTGCCGATAAATGG*CAGCCCCGGCGGC*CCCGGGGGGAAGCCCATCGGCCG	chr11:14892045	1	0	0/0	0/0	2/0	5/5	NciI:7;StyD4I:5;ScrFI:7;MwoI:10;BsaJI:5;BglI:10;Fnu4HI:11	2
+rs55777218	1	CCTGGCAGGGCGCAGTGGCTCAC*GCCTGTAATCCCAGCACTTTGGGAAGA*CCTCAGGTGACCCACCCACCTCA	chr11:60303423	1	0	22/123	574/276	226/233	>=0/>=0	BseYI:11;BstXI:19	1
+rs4944549	1	CCTTGTATTGGGCTCTGCCCCGC*CAAGTGCCTTCGGCTCCCTGGC*CGCTCTCCTCACTCCATATGTGG	chr11:85941188	1	0	0/0	0/0	0/1	5/9	BsaJI:17;NlaIV:15;PspGI:17;HpyAV:18;StyD4I:17;BstNI:19;ScrFI:19	1
+rs67598967	1	CCTCCCAAAGTGCTGGGATTACA*GGAGTGAGCCACCGTGCCCGGCCGGGCC*TGGTCATTCTTAAGAATCTGGGG	chr11:86132113	1	0	1200/0	0/0	0/1	>=0/20	EaeI:20;HpyCH4III:14;StyD4I:17,22;NciI:19,24;ScrFI:19,24;EagI:20;Sau96I:25;BaeGI:19;BsiEI:23;Bsp1286I:19	1
+rs67598967	2	CCCACCTCAGCCTCCCAAAGTGC*TGGGATTACAGGA*CCCGGCCGGGCACGGTGGCTCAC	chr11:86132103	2	1	984/437	2/182	0/0	>=0/>=0		3
+rs67598967	3	CCACCTCAGCCTCCCAAAGTGCT*GGGATTACAGGA*CCCGGCCGGGCACGGTGGCTCAC	chr11:86132104	3	1	1200/437	0/182	0/0	>=0/>=0		5
+rs11223616	1	GTTCTACCACCAGCGTGAGGAGG*GCTGGGCACTCGCCCCTC*CCATGGCTTATATGAAAACCCCA	chr11:133902892	3	0	0/0	0/0	0/0	4/5	Bsp1286I:9;BseYI:2;BaeGI:9	1
+rs11223616	2	TGGGTTCTACCACCAGCGTGAGG*AGGGCTGGGCACTCGCCCCTC*CCATGGCTTATATGAAAACCCCA	chr11:133902889	2	0	0/0	0/0	0/0	6/5	Bsp1286I:12;BseYI:5;BaeGI:12	2
+rs11223616	3	TGGGTTCTACCACCAGCGTGAGG*AGGGCTGGGCACTCGCC*CCTCCCATGGCTTATATGAAAAC	chr11:133902889	1	0	0/0	0/0	0/0	6/12	Bsp1286I:12;BseYI:5;BaeGI:12	4
+rs10444323	1	AGCCCTGTAATTAATAGTGCAGG*TTAGAAATAGGCTGC*CCTCTCCTCCATGTAATTCACCA	chr11:133941224	1	0	0/0	0/0	0/1	7/16	Fnu4HI:13;ApeKI:12;TseI:12	1
+rs1491942	1	CCTGGGTAGGCGTTTTGGTCTGC*AGGGTCTAGATAAGGCA*GTGCTATACTTGACAACCCAGGG	chr12:40226953	1	0	0/0	0/0	0/0	2/4	Hpy188III:7;XbaI:6	1
+rs1491942	2	CCTGGGTAGGCGTTTTGGTCTGC*AGGGTCTAGATAAGGCAG*TGCTATACTTGACAACCCAGGGG	chr12:40226953	2	0	0/0	0/0	0/0	2/10	Hpy188III:7;XbaI:6	3
+rs1491942	3	GGGTAGGCGTTTTGGTCTGCAGG*GTCTAGATAAGGCAGTGCTATACTTGACAA*CCCAGGGGAGCCTGGAACATACT	chr12:40226956	3	0	0/0	0/0	0/0	5/19	TspRI:20;BtsI:20;Hpy188III:4;BtsIMutI:20;XbaI:3	4
+rs113247976	1	GCAAACTCCTGTACCAGCAGTGG*AGCCACATCTTCTGGCGGC*CCCTTGGCTTCCTACCAGAAGGC	chr12:57581874	1	0	0/0	0/0	0/0	17/10	Fnu4HI:17	1
+rs73124200	1	CCATAGAAAGCCTCTACCGGCCG*GGCACGGTGGCTCA*CCAAAGTCCTGGGATTACAGGCG	chr12:64555450	1	0	0/337	0/9	0/0	2/>=0	HpyCH4III:7	1
+rs73124200	2	CCATAGAAAGCCTCTACCGGCCG*GGCACGGTGGCTCACGCC*CCTCCCAAAGTCCTGGGATTACA	chr12:64555450	2	0	0/350	0/263	0/0	2/>=0	HpyCH4III:7	3
+rs147767029	1	TGTCCGAGCCTGGCTGGGCTGGG*CGCGCTGGCTCCCT*CCTTCGCCGCCCGCAGAGCTGCC	chr14:52951113	2	0	0/0	0/0	0/1	25/16	Cac8I:7;NlaIV:10	1
+rs147767029	2	CCCTCGCCTGGCTCCCCGCGCTC*CACCCTCTCCCCGCCCCCTC*TGTCCGAGCCTGGCTGGGCTGGG	chr14:52951070	1	0	0/0	0/0	0/0	24/25	FauI:19	2
+rs117618017	1	CCTTTATGTCTTCACCATCGCCA*CCGAGCCGTTG*CGTATCATCTTCCTCATCGCCGG	chr15:63277680	2	0	0/0	0/0	0/0	8/2		1
+rs117618017	2	CCCTTTATGTCTTCACCATCGCC*ACCGAGCCGTTG*CGTATCATCTTCCTCATCGCCGG	chr15:63277679	1	0	0/0	0/0	1/0	11/2		2
+rs11862962	1	CCAGATGGTCCCGAACTCCTGAC*TTCAAGTGATCCGCC*CGCCTCATCCTCCCAAAGTGTGG	chr16:30898360	1	0	0/0	23/154	227/148	>=4/>=0	AlwI:3	1
+rs8050588	1	GCCCAGCACACAGTAGGGATCGG*GGAAGCATGGGTTTCCGC*CCTGCCTTCCTCATCCTTTGAGC	chr16:30926457	1	0	0/0	0/0	6/2	33/36		1
+rs28725459	1	CCTGACCAATATGGCGAAACCTC*CTGGTCTCGAACTCCTGA*CCTCAGGTGATCTGCCCACCTCG	chr16:31121310	2	0	5/352	309/27	92/0	>=0/>=0	Hpy188III:7,15;BcoDI:10;BsaI:10;BsmAI:10	1
+rs28725459	2	CCAATATGGCGAAACCTCGTCTC*TCAGGCTGGTCTCGAACTCCTGA*CCTCAGGTGATCTGCCCACCTCG	chr16:31121305	1	0	27/352	297/27	111/0	>=0/>=0	Hpy188III:12,20;BcoDI:15;BsaI:15;BsmAI:15	2
+rs9898399	1	CCATTTTAAACAGTGAAATTGGC*CAGGCATGGTGGCTCACAGCTGTAATCC*CCACCTCGGCCTCACAAAGTGCT	chr17:45872932	1	2	2/436	2/468	13/0	71/>=0	PvuII:20;MspA1I:20	1
+rs61572747	1	CCAAAGGTTTTATCAATCATGCT*TGCATAATAAAGCCTCCATAAACACCCTGAA*CCCTGAAAGCTCTGCAAACCCCT	chr17:73989	1	21	14/13	9/7	24/2	>=369/14		1
+rs3935637	1	CCCACCTCAGCCTCCCAAAGTGC*AGGATCAGCTTGA*CCCCAGGAGGCCGAGATTGCACA	chr17:936954	5	0	984/0	74/0	0/0	>=0/43	AlwI:11	1
+rs3935637	2	CCAAAGTGCTGGGATTACAGGCG*GAGGCTGAGGTGGGAGGATCAGCTTGA*CCCCAGGAGGCCGAGATTGCACA	chr17:936940	1	0	1200/0	0/0	0/0	>=0/43	BbvCI:6;AlwI:25;Bpu10I:6;DdeI:6	3
+rs3935637	3	CCCAAAGTGCTGGGATTACAGGC*AGGCTGAGGTGGGAGGATCAGCTTGA*CCCCAGGAGGCCGAGATTGCACA	chr17:936941	2	0	1200/0	0/0	0/0	>=0/43	BbvCI:5;AlwI:24;Bpu10I:5;DdeI:5	4
+rs3935637	4	CCTCCCAAAGTGCTGGGATTACA*CTGAGGTGGGAGGATCAGCTTGA*CCCCAGGAGGCCGAGATTGCACA	chr17:936944	3	0	1200/0	0/0	0/0	>=0/43	AlwI:21;DdeI:2	5
+rs3935637	5	CCACCTCAGCCTCCCAAAGTGCT*GAGGATCAGCTTGA*CCCCAGGAGGCCGAGATTGCACA	chr17:936953	4	0	1200/0	0/0	0/0	>=0/43	AlwI:12	6
+rs34186148	1	CGAGGTCAGGCAGCCTTAGCTGG*GCCAGCAGCCCCGTTCCA*CCCCCGACCCATCCTGACACAGC	chr17:1010879	2	2	2/2	0/0	0/1	9/14	TseI:6;Fnu4HI:7;Cac8I:4;ApeKI:6;BbvI:18	1
+rs34186148	2	GAGGTCAGGCAGCCTTAGCTGGG*CCAGCAGCCCCGTTCCA*CCCCCGACCCATCCTGACACAGC	chr17:1010880	6	2	2/2	0/0	0/1	11/14	TseI:5;Fnu4HI:6;ApeKI:5;BbvI:17	2
+rs34186148	3	CGAGGTCAGGCAGCCTTAGCTGG*GCCAGCAGCCCCGTTCCAC*CCCCGACCCATCCTGACACAGCC	chr17:1010879	3	2	2/2	0/0	0/2	9/16	TseI:6;Fnu4HI:7;Cac8I:4;ApeKI:6;BbvI:18	3
+rs34186148	4	GAGGTCAGGCAGCCTTAGCTGGG*CCAGCAGCCCCGTTCCAC*CCCCGACCCATCCTGACACAGCC	chr17:1010880	7	2	2/2	0/0	0/2	11/16	TseI:5;Fnu4HI:6;ApeKI:5;BbvI:17	4
+rs34186148	5	CGAGGTCAGGCAGCCTTAGCTGG*GCCAGCAGCCCCGTTCCACCCCCGA*CCCATCCTGACACAGCCCCCACC	chr17:1010879	4	2	2/2	0/0	0/4	9/50	TseI:6;Fnu4HI:7;Cac8I:4;ApeKI:6;BbvI:18	9
+rs34186148	6	GAGGTCAGGCAGCCTTAGCTGGG*CCAGCAGCCCCGTTCCACCCCCGA*CCCATCCTGACACAGCCCCCACC	chr17:1010880	8	2	2/2	0/0	0/4	11/50	TseI:5;Fnu4HI:6;ApeKI:5;BbvI:17	10
+rs34186148	7	CGAGGTCAGGCAGCCTTAGCTGG*GCCAGCAGCCCCGTTCCACCCCCGACCCAT*CCTGACACAGCCCCCACCCACTC	chr17:1010879	5	2	2/2	0/0	0/5	9/61	TseI:6;Fnu4HI:7;Cac8I:4;ApeKI:6;BbvI:18	13
+rs34186148	8	GAGGTCAGGCAGCCTTAGCTGGG*CCAGCAGCCCCGTTCCACCCCCGACCCAT*CCTGACACAGCCCCCACCCACTC	chr17:1010880	9	2	2/2	0/0	0/5	11/61	TseI:5;Fnu4HI:6;ApeKI:5;BbvI:17	14
+rs34186148	9	CCTTAGCTGGGCCAGCAGCCCCG*TTCCACCCCCGACCCATCCTGACACA*GCCCCCACCCACTCCAGCTCTGG	chr17:1010892	1	2	2/2	0/1	1/5	28/58	BtsCI:15;Hpy188III:19;FokI:2;BccI:23	15
+rs61572747	1	CCAAAGGTTTTATCAATCATGCT*TGCATAATAAAGCCTCCATAAACACCCTGAA*CCCTGAAAGCTCTGCAAACCCCT	chr17:73989	1	21	14/13	9/7	24/2	>=369/14		1
+rs9898399	1	CCACTGGGCAAGAGCAAGGGCAC*TACTGGGTCTTTGCAAGGCAAATGACGGCAA*GGCAACTTGCCTTTGGTGGTGGG	chr17:575049	3	0	0/0	0/0	1/0	15/5	BmrI:13;BsrI:8	1
+rs9898399	2	CCCACTGGGCAAGAGCAAGGGCA*CTACTGGGTCTTTGCAAGGCAAATGACGGCA*AGGCAACTTGCCTTTGGTGGTGG	chr17:575048	1	0	0/0	0/0	1/0	13/9	BmrI:14;BsrI:9	2
+rs9898399	3	CCACTGGGCAAGAGCAAGGGCAC*TACTGGGTCTTTGCAAGGCAAATGACGGCA*AGGCAACTTGCCTTTGGTGGTGG	chr17:575049	2	0	0/0	0/0	1/0	15/9	BmrI:13;BsrI:8	3
+rs916888	1	GCACAGAAGATTGCGAGCCGAGG*TGCAGCCCAGCTCCTCC*CCGCCTCGCCCCTCAGGGTTGGC	chr17:1305145	1	1	1/1	0/0	0/1	4/20	BseYI:7;TseI:3;Fnu4HI:4;ApeKI:3;BseRI:3;BbvI:15	1
+rs1141534	1	TGGGAACATGACGCAGGTGCAGG*TGTCTCTTCTCG*CCCTGGCGGGGAAGGTGAGGCCC	chr19:1032648	1	0	0/0	2/0	5/5	17/39	EarI:11;BsmAI:8;BcoDI:8	1
+rs1141534	2	GGTGTCTCTTCTCGCCCTGGCGG*GGAAGGTGAGG*CCCAGAGAGGGGCAGCCACCTGC	chr19:1032669	3	0	0/0	2/0	2/14	13/90		3
+rs1141534	3	CCAGGGCGAGAAGAGACACCTGC*CGGGGAAGGTGAGG*CCCAGAGAGGGGCAGCCACCTGC	chr19:1032666	2	0	6/0	7/0	2/14	7/90		5
+rs1141534	4	CCCGCCAGGGCGAGAAGAGACAC*GAAGGTGAGGC*CCAGAGAGGGGCAGCCACCTGCC	chr19:1032670	4	0	8/0	2/0	4/19	44/91		7
+rs3764645	1	GCCCTTGCACAGCTTGTTGGAGG*CCGCTGAGGACCTGG*CCCAGGAGGTACGAGGCCCCACT	chr19:1042781	3	0	0/0	0/0	0/0	8/3	BstNI:13;MspA1I:4;ScrFI:13;DdeI:5;PpuMI:9;PspGI:11;Bpu10I:5;StyD4I:11;EcoO109I:9;Sau96I:9;BbvCI:5;AvaII:9	1
+rs3764645	2	GGAGCCCTTGCACAGCTTGTTGG*AGGCCGCTGAGGACCTGG*CCCAGGAGGTACGAGGCCCCACT	chr19:1042778	2	0	0/0	0/0	0/0	11/3	BstNI:16;MspA1I:7;ScrFI:16;DdeI:8;PpuMI:12;PspGI:14;Bpu10I:8;StyD4I:14;EcoO109I:12;Sau96I:12;Fnu4HI:5;BbvCI:8;AvaII:12	2
+rs3764645	3	CCAAGCCCAGGAGCCCTTGCACA*GCTTGTTGGAGGCCGCTGAG*GACCTGGCCCAGGAGGTACGAGG	chr19:1042769	1	0	0/0	0/0	1/2	32/10	MspA1I:16;BspCNI:9;Fnu4HI:14;DdeI:17	4
+rs80257887	1	GGGAACACAGCAGGAAGTACAGG*TTCTACATTTCCCTGA*CCACTAGGGGTTGGGATTCAACA	chr19:44516747	1	0	0/0	0/0	1/0	28/5		1
+rs75161053	1	CGCTGACCTGCATTACACCCAGG*GTGATCTCCCACACAGCTGAGTTGTA*CCCTCTGTAGCTCCTACGAATCA	chr19:44544842	1	0	0/0	0/0	1/0	3/8	DdeI:18;BspCNI:10;PvuII:17;MspA1I:17	1
+rs111780744	1	CCACGTGGGATGGAACCAGAGGC*ATGGAAGCAAGACGCTAAA*TGAAGAGGGCCATAAGGGCTGGG	chr19:44663649	1	0	0/0	0/0	1/0	12/9		1
+rs2289495	1	CCTGTGGCCCCACACACCAGTCC*CAGCAAGGTGACCACGGCTGCTG*GACCCCTTCCCTGTTCAGGCAGG	chr19:44683986	2	0	0/0	0/0	1/0	36/15	HphI:20;BstEII:8;BsaJI:13;Tsp45I:8;ApeKI:18;BbvI:5;TseI:18;Fnu4HI:19;BtgI:13	1
+rs2289495	2	CCTGTGGCCCCACACACCAGTCC*CAGCAAGGTGACCACGGCT*GCTGGACCCCTTCCCTGTTCAGG	chr19:44683986	1	0	0/0	0/0	1/4	36/13	BstEII:8;BsaJI:13;Tsp45I:8;BtgI:13	2
+rs2289495	3	AGCAAGGTGACCACGGCTGCTGG*ACCCCTTCCCTGTTCAGGCAGGCCCAGC*CCCTCTCAGAACCTGCTGCCAGC	chr19:44684010	3	0	0/0	0/0	3/2	15/40	BseYI:24;MwoI:25;Sau96I:22;Cac8I:21;BslI:15;HpyAV:15	3
+rs2965163	1	TGCCCCCAGTACGTGCTCTGAGG*CAGGCCCGGCACGGAACACT*CCATGTGCCTATTTTGATCCTCA	chr19:44697226	1	0	0/0	0/0	0/0	7/19	Sau96I:4;NciI:7;ScrFI:7;StyD4I:5	1
+rs4600571	1	CGAGGTGGGCTGATCATCTGAGG*TCAGGAGTTCGAGACCAG*CCTGGCCAATATGGTGAAGCCCC	chr19:44714193	1	0	2/90	305/400	147/410	>=0/>=0	BcoDI:6;BsmAI:6;Hpy188III:3,11;BsaI:6	1
+rs111740474	1	GTTTGTATTTGTGTAGAGATGGG*GTTTCACCATGTTGG*CCAGGCTGGTCTTGAACTCTATC	chr19:44720215	1	0	0/0	24/29	393/298	>=68/>=128		1
+rs2965109	1	GGGGCAGAATTGTAAAGCGAGGG*ACAAGAAGAGTCAGGGGTCT*CCAAGCTTTGAGCCTGAGCCACT	chr19:44722047	1	0	0/0	0/0	0/4	4/17	MlyI:18;PleI:17;MboII:18;HinfI:9	1
+rs150820726	1	CCAAGAGACTCCCCCAGCTGCCA*CATGCAGGGTGAATGGAAT*GATGCACAGAATCCAGTTTCAGG	chr19:44723867	1	0	0/0	0/0	1/1	37/15		1
+rs10401176	1	CCTATTCCAAGAGTGAGAAAGCA*GGCCTCAGTTTTCCCC*GTCTGTGTGATGGGTTGGTATGG	chr19:44750196	1	0	0/0	0/0	11/0	138/23	DdeI:5	1
+rs8103315	1	CCACACCCTGCACCCAGCAATTC*ATCAGCCACAAAATCACTCTGCAGAC*AGTCCCTGGGGTCCCCTGCTAGG	chr19:44750858	1	0	0/0	0/1	0/1	54/29	SfcI:20;PstI:24	1
+rs140414737	1	AGAAACTCCGTTCCCAAGGGAGG*TGGTAACTCTGTGCTCAGAGCGC*CCTCTTGTGGCTATCCTCAGGTC	chr19:44770801	1	0	0/0	0/0	1/0	12/8	BsiHKAI:16;MwoI:20;Bsp1286I:16;DdeI:15;Hpy188I:18	1
+rs140414737	2	CCGTTCCCAAGGGAGGTGGTAAC*TCTGTGCTCAGAGC*GCCCTCTTGTGGCTATCCTCAGG	chr19:44770808	2	0	0/0	0/0	0/1	17/12	BsiHKAI:9;DdeI:8;Bsp1286I:9;Hpy188I:11	2
+rs10419669	1	CCAGATGTGTCCTACCTCGGGGC*CTTTGCATAAGCTGTTCCCTT*GGCCTGCACAGTCTTTCCTGAGG	chr19:44794794	1	0	0/0	0/0	0/8	6/21		1
+rs2965112	1	CCAGCACTTTGGGAGGCTGAGGC*AGGAGGATGGTTTAAGCCCAGGAG*CCATAGCTCACTGCAGCCTTGAC	chr19:44799220	1	0	1062/38	42/104	0/14	>=0/>=0	BsaJI:18;ScrFI:20;BstNI:20;PspGI:18;BtsCI:12;FokI:19;StyD4I:18	1
+rs140824606	1	CCTCAACCGCCTGGGCTCAAGCA*TTTGAATGAGCTATGATTGCG*CCCACTGCATTCCCGGCTGGGCA	chr19:44807784	1	0	6/0	347/1	4/90	>=0/>=117	MwoI:17	1
+rs1135062	1	GTGAAGCCTCCAACCCCCACGGG*AACAAGCGCCATGTCTT*CCACTTCGGCACCGGTGAGTGAC	chr19:44819437	10	0	0/0	0/0	1/0	15/1	HaeII:10	1
+rs1135062	2	TGTGAAGCCTCCAACCCCCACGG*GAACAAGCGCCATGTCTT*CCACTTCGGCACCGGTGAGTGAC	chr19:44819436	7	0	0/0	0/0	2/0	14/1	HaeII:11	2
+rs1135062	3	CCAACCCCCACGGGAACAAGCGC*CATGTCTTCCACTTCG*GCACCGGTGAGTGACTGAGGTGG	chr19:44819446	1	0	0/0	0/0	1/0	9/12		3
+rs1135062	4	CCATGTCTTCCACTTCGGCACCG*GTGAGTGACTGAGGTG*GTGGCAGAGGAGCCGGGTGTGGG	chr19:44819468	8	0	0/0	0/1	0/0	5/26	Tsp45I:5;BspCNI:2;DdeI:10	5
+rs1135062	5	CCATGTCTTCCACTTCGGCACCG*GTGAGTGACTGAGGTGG*TGGCAGAGGAGCCGGGTGTGGGG	chr19:44819468	9	0	0/0	0/0	0/2	5/36	Tsp45I:5;BspCNI:2;DdeI:10	7
+rs1135062	6	CCCACGGGAACAAGCGCCATGTC*TTCCACTTCGGCACCGGTGAGTGACTGAGGT*GGTGGCAGAGGAGCCGGGTGTGG	chr19:44819452	4	0	0/0	0/0	0/3	2/73	HphI:29;NlaIV:13;BspCNI:18;Tsp45I:21;AgeI:14;BsrFI:14;BanI:11;DdeI:26;BsaWI:14;SgrAI:14	8
+rs1135062	7	CCACGGGAACAAGCGCCATGTCT*TCCACTTCGGCACCGGTGAGTGACTGAGGT*GGTGGCAGAGGAGCCGGGTGTGG	chr19:44819453	6	0	0/0	0/0	0/3	4/73	HphI:28;NlaIV:12;BspCNI:17;Tsp45I:20;AgeI:13;BsrFI:13;BanI:10;DdeI:25;BsaWI:13;SgrAI:13	9
+rs1135062	8	CCCACGGGAACAAGCGCCATGTC*TTCCACTTCGGCACCGGTG*AGTGACTGAGGTGGTGGCAGAGG	chr19:44819452	3	0	0/0	0/0	0/3	2/98	NlaIV:13;AgeI:14;BsaWI:14;BsrFI:14;BanI:11;SgrAI:14	11
+rs1135062	9	CCACGGGAACAAGCGCCATGTCT*TCCACTTCGGCACCGGTG*AGTGACTGAGGTGGTGGCAGAGG	chr19:44819453	5	0	0/0	0/0	0/3	4/98	NlaIV:12;AgeI:13;BsaWI:13;BsrFI:13;BanI:10;SgrAI:13	12
+rs1135062	10	CCAACCCCCACGGGAACAAGCGC*CATGTCTTCCACTTCGGCACCGGTG*AGTGACTGAGGTGGTGGCAGAGG	chr19:44819446	2	0	0/0	0/0	1/3	9/98	NlaIV:19;AgeI:20;BsaWI:20;BsrFI:20;BanI:17;SgrAI:20	13
+rs28399637	1	GGGCAGTGGAGCACGCCCGTGGG*CACAGGCTGACCTCTCCATCCGCTC*CCCAGTGCTGAGCCAAGAACCTC	chr19:44820863	5	0	0/0	0/1	0/0	9/17	BsrBI:23;FokI:4;BccI:25;BtsCI:17	1
+rs28399637	2	TGGAGCACGCCCGTGGGCACAGG*CTGACCTCTCCATCCGCTC*CCCAGTGCTGAGCCAAGAACCTC	chr19:44820869	6	0	0/0	0/1	0/0	9/17	BsrBI:17;BtsCI:11;BccI:19	2
+rs28399637	3	TGGGCAGTGGAGCACGCCCGTGG*GCACAGGCTGACCTCTCCATCCGCTC*CCCAGTGCTGAGCCAAGAACCTC	chr19:44820862	3	0	0/0	0/1	3/0	9/17	BsrBI:24;FokI:5;BccI:26;BtsCI:18	3
+rs28399637	4	GGGCAGTGGAGCACGCCCGTGGG*CACAGGCTGACCTCT*CCATCCGCTCCCCAGTGCTGAGC	chr19:44820863	4	0	0/0	0/0	0/2	9/31		4
+rs28399637	5	TGGGCAGTGGAGCACGCCCGTGG*GCACAGGCTGACCTCT*CCATCCGCTCCCCAGTGCTGAGC	chr19:44820862	2	0	0/0	0/0	3/2	9/31		7
+rs28399637	6	GGCCTGGGCCCCCTGGTGAGAGG*GACCTGCTGGGCAGTGGAGCACG*CCCGTGGGCACAGGCTGACCTCT	chr19:44820832	7	0	0/0	0/0	2/5	41/21	Bsp1286I:22;BfuAI:12;TspRI:19;BtsI:19;BspMI:12;BseYI:7;BtsIMutI:19;BsiHKAI:22	10
+rs28399637	7	GAGAGGGACCTGCTGGGCAGTGG*AGCACGCCCGTGGGCACAGGCTGACCTCT*CCATCCGCTCCCCAGTGCTGAGC	chr19:44820849	1	0	0/0	0/0	9/2	70/31	BtgI:9;Bsp1286I:17;Cac8I:5;BsaJI:9;BaeGI:17;AleI:8;MslI:8	12
+rs56394238	1	TGAAACAAGGTTTCTTTTTTGGG*GGGATGGGGGGATGGAGTCTCGCTCTGTCG*CCCAGGCTGGAGTGCAGCGGTAC	chr19:44832393	1	0	0/74	0/579	2/170	49/>=0	BsmAI:23;MlyI:25;BtsCI:9,17;FokI:16,24;BcoDI:23;PleI:24;HinfI:16;BccI:6	1
+rs56394238	2	GGTTTCTTTTTTGGGGGGATGGG*GGGATGGAGTCTCGCTCTGTCG*CCCAGGCTGGAGTGCAGCGGTAC	chr19:44832401	2	0	0/74	1/579	15/170	110/>=0	BsmAI:15;MlyI:17;BtsCI:9;FokI:16;BcoDI:15;PleI:16;HinfI:8	3
+rs56394238	3	GTTTCTTTTTTGGGGGGATGGGG*GGATGGAGTCTCGCTCTGTCG*CCCAGGCTGGAGTGCAGCGGTAC	chr19:44832402	3	0	0/74	9/579	24/170	>=291/>=0	BsmAI:14;MlyI:16;BtsCI:8;FokI:15;BcoDI:14;PleI:15;HinfI:7	5
+rs55840414	1	CCAGCCTGGTAATATTGTGAAAC*CCCGTCTCTAATAAAACT*GCGAACATAGCCAGGCGTCGTGG	chr19:44840279	1	0	0/0	2/0	52/0	>=249/20	Esp3I:10;BcoDI:10;BsmBI:10;BsmAI:10	1
+rs111371860	1	CCTCCCAGGTTCATGCCATTCTC*CGGAGCTTGCACTGAG*CCAAGATCGCGCCACTGCACTCC	chr19:44842488	1	0	396/1145	25/55	0/0	>=0/>=0	BtsIMutI:10;Cac8I:8;DdeI:13;BspCNI:5	1
+rs7255063	1	CCAATAGAGGGAAGCGGTCAGAC*ACAGATTTAGGAATGGG*GTCAGAGACACGTGTAGGAATGG	chr19:44849109	1	0	0/0	0/0	0/0	4/6		1
+rs10421035	1	CCTGGCTAACACGGTGAAACCAC*ATGGTCTCAATCTCCTGA*CCTCGTGATCTGCCTGCCTTGGC	chr19:44853386	1	0	176/326	469/29	2/0	>=0/>=0	Hpy188III:15;BsmAI:10;BsaI:10;BcoDI:10	1
+rs10421035	2	CCTGGCTAACACGGTGAAACCAC*ATGGTCTCAATCTCCTGACCTCGTGATCTG*CCTGCCTTGGCCTCCCAAAGTGC	chr19:44853386	2	0	176/1200	469/0	2/0	>=0/>=0	Hpy188III:15,23;BssSI:21;BsmAI:10;BsaI:10;BcoDI:10	3
+rs35396326	1	CCTGACCTCGTGATCCGCCCTCC*TCGGCCTCCCAAAGTGTTGGAATTAC*CCTGGGCGCAATGGCTCACGCCT	chr19:44853714	1	0	313/2	0/146	0/88	>=0/>=0	BstXI:17	1
+rs12978931	1	CCCCCCAAGTAGCTGAGACTACA*CTGAGGTGGGAGGATCACTTCGGCC*CCAGAGACGGTTTGCAGTGAGCA	chr19:44860389	1	0	396/0	86/0	0/0	>=0/7	AlwI:21;DdeI:2	1
+rs12978931	2	CCCACCTCAGCCCCCCAAGTAGC*AGGATCACTTCGGCC*CCAGAGACGGTTTGCAGTGAGCA	chr19:44860399	2	0	351/0	214/0	0/0	>=0/7	AlwI:11	3
+rs112422902	1	CCCACCCCTGTAATCCTAGCACT*TTGGAAGGCCGAGA*CCTGACCTCAGGCGATCTGCCCA	chr19:44865906	1	0	3/211	133/315	59/18	>=0/>=0		1
+rs387976	1	CCCGAGGGAAAACAGACACCTCT*TCAGGAATCCAGATACAGCC*AGGGAGATAGGACACCCCTACGG	chr19:44875786	1	0	0/0	0/0	2/0	18/8	HinfI:6;TfiI:6;Hpy188III:3,10	1
+rs11668861	1	CCCCCGAGGGGGTGTGGCCCCCA*AGCTCATAGCTTTGTG*AGGACCCCACAGCACATTCAGGG	chr19:44877672	1	0	0/0	0/0	1/1	9/14		1
+rs11668861	2	CCGAGGGGGTGTGGCCCCCAAGC*TCATAGCTTTGTG*AGGACCCCACAGCACATTCAGGG	chr19:44877675	2	0	0/0	0/0	1/1	15/14		3
+rs41290120	1	AGGTTGCTGGGGGTCTCGGGAGG*GGAGGGCTGCT*CCCCACTCCCATTCTTAGGGGCC	chr19:44879401	2	0	0/0	0/0	1/0	14/11	TseI:7;Fnu4HI:8;ApeKI:7	1
+rs41290120	2	AGGTTGCTGGGGGTCTCGGGAGG*GGAGGGCTGCTCCCCACTC*CCATTCTTAGGGGCCCTGAGGGC	chr19:44879401	3	0	0/0	0/0	1/1	14/12	TseI:7;Fnu4HI:8;ApeKI:7	2
+rs41290120	3	GTTGCTGGGGGTCTCGGGAGGGG*AGGGCTGCTCCCCACTC*CCATTCTTAGGGGCCCTGAGGGC	chr19:44879403	6	0	0/0	0/0	0/1	16/12	TseI:5;Fnu4HI:6;ApeKI:5	3
+rs41290120	4	CCCCCAGGTTGCTGGGGGTCTCG*GGAGGGGAGGGCT*GCTCCCCACTCCCATTCTTAGGG	chr19:44879396	1	0	0/0	0/0	1/3	9/17		4
+rs41290120	5	GTTGCTGGGGGTCTCGGGAGGGG*AGGGCTGCTCC*CCACTCCCATTCTTAGGGGCCCT	chr19:44879403	5	0	0/0	0/0	0/0	16/17	TseI:5;Fnu4HI:6;ApeKI:5	6
+rs41290120	6	GGTTGCTGGGGGTCTCGGGAGGG*GAGGGCTGCTCC*CCACTCCCATTCTTAGGGGCCCT	chr19:44879402	4	0	0/0	0/0	0/0	27/17	TseI:6;Fnu4HI:7;ApeKI:6	9
+rs11673139	1	CGGCCTCACAAGGCTGTCGTGGG*ACCCAGTAAGGACATGCCCGTGATG*CCCTCATGCAGCCTCATTGACCT	chr19:44879757	3	0	0/0	0/0	0/1	4/11	BsrI:4;MslI:18;NspI:17	1
+rs11673139	2	CGGCCTCACAAGGCTGTCGTGGG*ACCCAGTAAGGACATG*CCCGTGATGCCCTCATGCAGCCT	chr19:44879757	2	0	0/0	0/1	0/1	4/11	BsrI:4	2
+rs11673139	3	GTGTTTCCATCGGCCTCACAAGG*CTGTCGTGGGACCCAGTAAGGACATG*CCCGTGATGCCCTCATGCAGCCT	chr19:44879747	1	0	0/0	0/1	1/1	14/11	NlaIV:11,12;BsrI:14;PpuMI:10;BsmFI:23;BmrI:8;EcoO109I:10;AvaII:10;Sau96I:10	3
+rs76692773	1	CGCGGGGCGGAATCAAAAGAGGG*CCTCCTCCAGGAGAGAGGCGGGGCGATG*CCTCAGCGGGCGTGGCAAAATGC	chr19:44890902	1	0	0/0	0/0	0/0	1/3	StyD4I:7;FauI:12;BslI:8;ScrFI:9;PspGI:7;EcoNI:6;BstNI:9	1
+rs76692773	2	CCAGGAGAGAGGCGGGGCGATGC*CTCAGCGGGCGTGGCAAAA*TGCTCAGCACAGACCAATGGCGG	chr19:44890931	2	0	0/0	0/0	0/1	14/11	Cac8I:8;DdeI:2;MspA1I:6;MwoI:12;BspCNI:15	2
+rs117264457	1	CCTGGAAGTCCAGGTGGGGCCAC*TTGCTAATTCTCATGTGTT*GCTCCGGCCCCTCCAGCTGCAGG	chr19:44901150	1	0	0/0	0/0	2/4	41/69		1
+rs1038026	1	GTAGGTAGAGCAGCCAGGCGTGG*TGACTCACGCCTGTAAT*CCCAGCATTTTGGGAGGCCAAGC	chr19:44901794	1	0	0/48	0/594	1/237	10/>=0	HinfI:3	1
+rs10119	1	CCTGGGGTCCCGGGAGGGATTCC*GGAATTGAGGGGCA*CGCAGGATTCTGAGCACCAGGGG	chr19:44903393	1	0	0/0	0/3	1/1	13/19		1
+rs449647	1	CCAACATGGTGAAACCCCATCTC*CCAGGCTGGTCTCAAACT*CCTGACCTTAAGTGATTCGCCCA	chr19:44905269	1	0	1000/6	3/275	0/150	>=0/>=0	BstNI:3;BsmAI:15;BcoDI:15;BsaI:15;ScrFI:3	1
+rs429358	1	GCGGACATGGAGGACGTGTGCGG*CCGCCTGGTGCAGTA*CCGCGGCGAGGTGCAGGCCATGC	chr19:44908666	1	0	0/0	0/0	0/1	11/6	BstNI:6;PspGI:4;StyD4I:4;ScrFI:6	1
+rs7412	1	CCTGCGCAAGCTGCGTAAGCGGC*TCCTCCGCGATGC*CGATGACCTGCAGAAGCGCCTGG	chr19:44908770	1	0	0/0	0/0	0/1	5/5		1
+rs7412	2	CCTGCGCAAGCTGCGTAAGCGGC*TCCTCCGCGATGCCGATGACCTGCAGAAG*CGCCTGGCAGTGTACCAGGCCGG	chr19:44908770	2	0	0/0	0/0	0/0	5/16	BfuAI:29;BtgZI:23;SfcI:22;PstI:26;BspMI:29	2
+rs59325138	1	CCCCCTACTGCCAGGCTGACACG*TGGTTGCGGGGGCACAAG*GCCAGCCAACCTAGAGTCTGAGG	chr19:44913005	1	1	0/0	1/0	0/3	7/11	Bsp1286I:15;BaeGI:15	1
+rs12691088	1	CCTCTGGGATTGGCTGTCCTGCT*TCGACAGCCTTGAAAGTGG*GTAAGCTGGGTGGGGGGCTCTGG	chr19:44915176	1	0	0/0	1/0	1/5	21/36		1
+rs12691088	2	CCTCTGGGATTGGCTGTCCTGCT*TCGACAGCCTTGAAAGTGGGTAAGC*TGGGTGGGGGGCTCTGGGAGAGG	chr19:44915176	2	0	0/0	1/0	1/15	21/146		3
+rs1064725	1	CCAGGAGGGGCCTCTGAAATTTC*CCACACCCCAGCGCCTG*TGCTGAGGACTCCCTCCATGTGG	chr19:44919250	1	0	1/0	0/0	0/1	11/21	AlwNI:15;BseYI:8;HaeII:15	1
+rs1064725	2	CCTCTGAAATTTCCCACACCCCA*GCGCCTGTGCTGAG*GACTCCCTCCATGTGGCCCCAGG	chr19:44919260	2	0	0/0	1/0	2/2	33/21	DdeI:11;BspCNI:3	3
+rs117664574	1	CCTCCAACATCCACTCGACCCCT*TGGAATTTCGGTGGAGAG*GAGCAGAGGTTGTCCTGGCGTGG	chr19:44924507	4	0	0/0	0/0	0/1	10/22	ApoI:4	1
+rs117664574	2	CCACCTCCAACATCCACTCGACC*CCTTGGAATTTCGGTGGAGAG*GAGCAGAGGTTGTCCTGGCGTGG	chr19:44924504	3	0	0/0	0/0	0/1	16/22	StyI:2;BsaJI:2;ApoI:7	2
+rs117664574	3	CCCATGCCACCTCCAACATCCAC*TCGACCCCTTGGAATTTCGGTGGAGAG*GAGCAGAGGTTGTCCTGGCGTGG	chr19:44924498	1	1	0/0	0/0	0/1	34/22	StyI:8;BsaJI:8;ApoI:13	5
+rs117664574	4	CCATGCCACCTCCAACATCCACT*CGACCCCTTGGAATTTCGGTGGAGAG*GAGCAGAGGTTGTCCTGGCGTGG	chr19:44924499	2	1	0/0	0/0	3/1	44/22	StyI:7;BsaJI:7;ApoI:12	6
+rs7254133	1	AGGGTAAATTTAGCAGGACGCGG*TGGCTCACGCCTGTAATC*CCAGCACTTTGGGAGTCCGAGGC	chr19:44935277	1	0	0/309	0/0	2/0	9/>=0		1
+rs141441332	1	AGGGTAAATTTAGCAGGACGCGG*TGGCTCACGCCTGTAATC*CCAGCACTTTGGGAGTCCGAGGC	chr19:44935277	1	0	0/309	0/0	2/0	9/>=0		1
+rs8102895	1	TGGGAGAAAGACGAGTACGGTGG*CCAGGTTGGTCCTT*CCATAGCCGGAAGTGGCCTTCCT	chr19:44955199	2	0	0/0	0/0	0/1	5/2	AvaII:9;BstNI:3;ScrFI:3;Sau96I:9	1
+rs8102895	2	GGCTGGGAGAAAGACGAGTACGG*TGGCCAGGTTGGTCCTT*CCATAGCCGGAAGTGGCCTTCCT	chr19:44955196	1	0	0/0	0/0	1/1	11/2	BstNI:6;AvaII:12;ScrFI:6;Sau96I:12;EaeI:2;MscI:4;PspGI:4;StyD4I:4	2
+rs75178253	1	CCTAGTGCACAGCAGGCACACCC*TCTGCACAGTCTGCTGCTTTA*GCTAGCCTGCTCCTGTAGCCAGG	chr19:44957720	1	0	0/0	0/0	2/0	32/8	HpyCH4III:9;ApeKI:14;BstAPI:11;TseI:14;MwoI:11;Fnu4HI:15	1
+rs75178253	2	CCTAGTGCACAGCAGGCACACCC*TCTGCACAGTCTGCTGCTTTAGCTAGCC*TGCTCCTGTAGCCAGGAACTCGG	chr19:44957720	2	0	0/0	0/1	2/1	32/15	HpyCH4III:9;TseI:14;ApeKI:14;BstAPI:11;Fnu4HI:15;BmtI:27;MwoI:11,20;NheI:23;Cac8I:25	2
+rs145639166	1	CCTTTGGCTAGAATGTCTTCACA*TGGCCATGGCCAGCTGCACGGGAGGCT*GGGAAATGTGGTCTTTAATCTGG	chr19:44965850	1	2	0/0	0/2	1/22	29/92	MscI:4,10;BtgI:5;NcoI:5;Fnu4HI:15;EaeI:2,8;PvuII:14;ApeKI:14;TseI:14;Cac8I:12;MwoI:23;MspA1I:14;StyI:5;BsaJI:5	1
+rs73558179	1	CCCAAAGACACTTTAATGGTAAC*TGCCGGGTGGTA*GGGCAGACTTGGGAGGTGATGGG	chr19:44973193	1	0	0/0	0/0	1/0	12/32	ScrFI:5;StyD4I:3;NciI:5	1
+rs73558179	2	CCAAAGACACTTTAATGGTAACT*GCCGGGTGGTA*GGGCAGACTTGGGAGGTGATGGG	chr19:44973194	4	0	0/0	0/0	1/0	13/32	ScrFI:4;StyD4I:2;NciI:4	2
+rs73558179	3	CCCAAAGACACTTTAATGGTAAC*TGCCGGGTGGTAG*GGCAGACTTGGGAGGTGATGGGG	chr19:44973193	2	0	0/0	0/0	1/0	12/39	ScrFI:5;StyD4I:3;NciI:5	3
+rs73558179	4	CCAAAGACACTTTAATGGTAACT*GCCGGGTGGTAG*GGCAGACTTGGGAGGTGATGGGG	chr19:44973194	5	0	0/0	0/0	1/0	13/39	ScrFI:4;StyD4I:2;NciI:4	4
+rs73558179	5	CCCAAAGACACTTTAATGGTAAC*TGCCGGGTGGTAGGGCAGACTT*GGGAGGTGATGGGGTGTGGAGGG	chr19:44973193	3	0	0/0	0/0	1/13	12/191	ScrFI:5;StyD4I:3;NciI:5	6
+rs73558179	6	CCAAAGACACTTTAATGGTAACT*GCCGGGTGGTAGGGCAGACTT*GGGAGGTGATGGGGTGTGGAGGG	chr19:44973194	6	0	0/0	0/0	1/13	13/191	ScrFI:4;StyD4I:2;NciI:4	7
+rs73558179	7	CCAAAGACACTTTAATGGTAACT*GCCGGGTGGTAGGGCAGACTTGGGA*GGTGATGGGGTGTGGAGGGGTGG	chr19:44973194	7	0	0/0	0/1	1/17	13/208	ScrFI:4;StyD4I:2;NciI:4	11
+rs145729706	1	TGGGAGAATCTTTTGGACCCCGG*AGGCGGAGATTGCAGTGAG*CCGAGATCGTGCCACTGTACTCT	chr19:44980414	1	0	0/98	4/562	262/272	>=389/>=0	EciI:19;MwoI:10	1
+rs35577563	1	GAAATATTATTATGGATGGCAGG*TGTAGAGCCCTGCCAA*CCTCTCGATCCTGAAGCTCCCCT	chr19:45001056	2	0	0/0	0/0	0/1	12/6	BanII:10;Bsp1286I:10	1
+rs35577563	2	AGGTTTCCGAAATATTATTATGG*ATGGCAGGTGTAGAGCCCTGCCAA*CCTCTCGATCCTGAAGCTCCCCT	chr19:45001048	1	0	0/0	0/0	0/1	16/6	BanII:18;Bsp1286I:18	3
+rs117612135	1	CCAGAGCAATGGGCAGCGACGCC*TGCCCAACCCCTCCTG*AGCGCCCAGCCTCCCTTTCCCGG	chr19:45001239	6	0	0/0	0/0	0/1	6/18		1
+rs117612135	2	AGTTGTCTCGTCCAGAGCAATGG*GCAGCGACGCCTGC*CCAACCCCTCCTGAGCGCCCAGC	chr19:45001228	1	0	0/0	0/0	0/0	4/31	Hpy99I:10;TseI:2;Cac8I:12;MwoI:11;Fnu4HI:3;BsaHI:8;BbvI:14;ApeKI:2	2
+rs117612135	3	GTTGTCTCGTCCAGAGCAATGGG*CAGCGACGCCTGC*CCAACCCCTCCTGAGCGCCCAGC	chr19:45001229	3	0	0/0	0/0	0/0	8/31	Hpy99I:9;Cac8I:11;MwoI:10;BsaHI:7	3
+rs117612135	4	AGTTGTCTCGTCCAGAGCAATGG*GCAGCGACGCCTGCCCAACC*CCTCCTGAGCGCCCAGCCTCCCT	chr19:45001228	2	0	0/0	0/0	0/0	4/47	Hpy99I:10;HgaI:16;TseI:2;Cac8I:12;MwoI:11;Fnu4HI:3;BsaHI:8;BbvI:14;ApeKI:2	5
+rs117612135	5	GTTGTCTCGTCCAGAGCAATGGG*CAGCGACGCCTGCCCAA*CCCCTCCTGAGCGCCCAGCCTCC	chr19:45001229	4	0	0/0	0/0	0/3	8/39	Hpy99I:9;HgaI:15;BsaHI:7;Cac8I:11;MwoI:10	6
+rs117612135	6	GTTGTCTCGTCCAGAGCAATGGG*CAGCGACGCCTGCCCAACC*CCTCCTGAGCGCCCAGCCTCCCT	chr19:45001229	5	0	0/0	0/0	0/0	8/47	Hpy99I:9;HgaI:15;BsaHI:7;Cac8I:11;MwoI:10	7
+rs4803791	1	CCAGATTGCGTCACTGCACTCCA*GCTCATTGCAACTT*CCACGTCTCAGGCTTAAGTGATC	chr19:45020271	1	0	4/0	46/3	15/112	>=0/>=294	BsrDI:4	1
+rs142380271	1	CCTGGCTAACATGGTGAAACCCA*CTGGTCTGGAACTC*CCGACCTCAGGTGATCCGCCCAC	chr19:45021764	1	0	303/672	148/2	0/0	>=0/>=0	Hpy188III:7	1
+rs34583389	1	CCAAAAAAAAAATTAGCCGGGCG*TCGTGGCGGGCGCC*CCTCCTGAGTAGCTGGGACTACA	chr19:45027072	1	0	6/1022	11/0	10/0	>=0/>=0	BsaHI:11;BanI:10;Cac8I:9;SfoI:12;KasI:10;HaeII:14;NarI:11;NlaIV:12;PluTI:14	1
+rs147188206	1	CCTTGGACTTGGCTGGCTTGTCC*CAGGGCAGAGGGAGCTGGGT*GCGCTGTGTGGCCCCAGCTGAGG	chr19:45049291	1	0	0/0	0/0	0/4	17/27	MwoI:12;BseYI:15	1
+rs147188206	2	CCAGGGCAGAGGGAGCTGGGTGC*GCTGTGTGGCCCCAGCTG*AGGAATCAGCTAAGGAATCGAGG	chr19:45049313	2	0	0/0	0/0	10/5	69/15	Sau96I:9;NlaIV:11;BseYI:12;MspA1I:16;PvuII:16	2
+rs139995984	1	CCCAAGGGAGAGGGCCCAGACCT*GCCCGCAGATGTGGACATAGGGTGT*CGGCCCAGCATGTCCCACATGGG	chr19:45071175	2	0	0/0	0/0	2/1	17/6	Cac8I:4;FauI:11;Hpy166II:14	1
+rs139995984	2	TGCCCGCAGATGTGGACATAGGG*TGTCGGCCCAGCATGTCCCACATGGGC*CCCTTTGCCCAGGGCCTCTGGCG	chr19:45071197	1	0	0/0	0/0	0/3	5/20	Sau96I:6;NspI:16;BseYI:8	2
+rs7251911	1	CCAGGTGGCGACCCGGGCTGTGC*TGGCTTCCAAGCCTGCG*AGCCAGCCCGCGACCACGTGGGG	chr19:45079109	2	0	0/0	0/0	2/0	9/3	Cac8I:14	1
+rs7251911	2	CCAGGTGGCGACCCGGGCTGTGC*TGGCTTCCAAGCCTG*CGAGCCAGCCCGCGACCACGTGG	chr19:45079109	1	0	0/0	0/0	2/3	9/1		2
+rs7251911	3	GGTGGCGACCCGGGCTGTGCTGG*CTTCCAAGCCTGCGAGCCAGC*CCGCGACCACGTGGGGCAGTGGC	chr19:45079112	3	0	0/0	0/0	1/0	18/6	Cac8I:11,15,19	5
+rs12461065	1	CCCTCGTGCTCCCCCAGCCAGCG*TGTCCTTGGCCTGCTT*GGGACATCCTGCCCCTGCATGGG	chr19:45102017	5	0	0/0	0/0	0/0	17/9	BsaJI:5;StyI:5;Cac8I:12	1
+rs12461065	2	CCTTGGATCTGAGTCCCTTCCCT*CGTGCTCCCCCAGCC*AGCGTGTCCTTGGCCTGCTTGGG	chr19:45101998	4	0	0/0	0/0	4/3	29/9	BsiHKAI:7;MwoI:11;Bsp1286I:7;BseYI:10	3
+rs12461065	3	CCCAGCCAGCGTGTCCTTGGCCT*GCTTGGGACATCCT*GCCCCTGCATGGGCTGTGGGAGG	chr19:45102029	7	0	0/0	0/0	1/6	15/39	BtsCI:9	4
+rs12461065	4	CCCTCGTGCTCCCCCAGCCAGCG*TGTCCTTGGCCTGCTTGGGACATCCT*GCCCCTGCATGGGCTGTGGGAGG	chr19:45102017	6	0	0/0	0/0	0/6	17/39	BsaJI:5;StyI:5;BtsCI:21;Cac8I:12;FokI:8	5
+rs12461065	5	CCCTTCCCTCGTGCTCCCCCAGC*CAGCGTGTCCTTGGCCTGCTT*GGGACATCCTGCCCCTGCATGGG	chr19:45102012	1	0	0/0	0/0	5/0	53/9	BsaJI:10;StyI:10;Cac8I:17	6
+rs12461065	6	CCCTTCCCTCGTGCTCCCCCAGC*CAGCGTGTCCTTGGCCTGCTTGGGACATCCT*GCCCCTGCATGGGCTGTGGGAGG	chr19:45102012	2	0	0/0	0/0	5/6	53/39	BsaJI:10;StyI:10;BtsCI:26;Cac8I:17;FokI:13	10
+rs12461065	7	CCTTCCCTCGTGCTCCCCCAGCC*AGCGTGTCCTTGGCCTGCTT*GGGACATCCTGCCCCTGCATGGG	chr19:45102013	3	0	0/0	0/0	5/0	105/9	BsaJI:9;StyI:9;Cac8I:16	11
+rs76271385	1	AGATAAGAAACTGCTACTTGGGG*TCATTGGTCACTTGCTGAAGATGGCAGAAG*CCAGGGCAGCCCTGCCTGGGTCC	chr19:45109562	2	0	0/0	0/0	1/3	25/66	BccI:15;Tsp45I:7;MboII:30	1
+rs76271385	2	CCACATTTTTGCAGATAAGAAAC*TGCTACTTGGGGTCATTGGTCACT*TGCTGAAGATGGCAGAAGCCAGG	chr19:45109550	1	0	0/0	0/0	8/1	91/30	Tsp45I:19	2
+rs145903417	1	TGGTCCACCCAGGGGAAGACAGG*AAGAGAAGTGGGCCATTCTGG*CCTCAGACCTCTTCGTCCTTTCC	chr19:45125809	1	0	0/0	0/0	2/0	9/20	Sau96I:11	1
+rs145903417	2	TGGTCCACCCAGGGGAAGACAGG*AAGAGAAGTGGGCCATTCTGGCCTCAGA*CCTCTTCGTCCTTTCCCAGACCC	chr19:45125809	2	0	0/0	0/0	2/1	9/38	BglI:19;Hpy188I:27;SfiI:19;MwoI:19;DdeI:24;Sau96I:11	2
+rs145903417	3	GGGAAGACAGGAAGAGAAGTGGG*CCATTCTGGCCTCAGA*CCTCTTCGTCCTTTCCCAGACCC	chr19:45125821	3	0	0/0	0/0	16/1	175/38	DdeI:12;Hpy188I:15	4
+rs75463276	1	GAAATGTGGAGAGTTGAGAGTGG*CTCCAGAGCTCCTGAG*CCAGGGGCTAGGACTTGAACCCT	chr19:45135541	1	0	0/0	1/0	2/0	36/18	BspCNI:5;BsiHKAI:11;Eco53kI:9;Hpy188III:4,12;SacI:11;DdeI:13;Bsp1286I:11;BanII:11	1
+rs146723120	1	GTGTGCGGCACCTCAAGAACGGG*CTCATCAGCAACCGCAGCGTGCTGCG*CCTCGGGCTGGCCTCCACCAAGC	chr19:45144912	3	0	0/0	0/0	0/3	0/11	MwoI:15;Cac8I:20;Fnu4HI:16,23;BbvI:9;TseI:15,22;ApeKI:15,22	1
+rs146723120	2	GGTGTGCGGCACCTCAAGAACGG*GCTCATCAGCAA*CCGCAGCGTGCTGCGCCTCGGGC	chr19:45144911	1	0	0/0	0/0	0/0	4/12		2
+rs146723120	3	CCGCAGCGTGCTGCGCCTCGGGC*TGGCCTCCACCAAGCTCACGT*GCGAGGGTAGGGTACGGGGCCGG	chr19:45144946	2	0	0/0	0/0	0/0	12/15		4
+rs192775394	1	CCTGGCTAACATGGTGAAACCCC*ATGGTCTTGATCTCCTGA*CCTCGTGATTCACCCACCTCGGC	chr19:45168194	1	0	596/81	0/274	0/69	>=0/>=0	Hpy188III:7,15	1
+rs192775394	2	CCTGGCTAACATGGTGAAACCCC*ATGGTCTTGATCTCCTGACCTCGTGATTCA*CCCACCTCGGCCTCCCAAAGTGC	chr19:45168194	2	1	596/966	0/57	0/0	>=0/>=0	TfiI:26;Hpy188III:7,15,23;BssSI:21;HinfI:26	3
+rs149553138	1	GGCAGCACTACCAGCGGCGCAGG*TGCAGAGCCACCGCCTGGGTCCAGATCCGC*CCCAGCACTTACCAGTGTGGGAC	chr19:45169169	5	0	0/0	0/0	0/0	11/8	PspGI:14;NlaIV:20;AlwI:19;BstNI:16;StyD4I:14;BsaJI:15;Sau96I:19;AvaII:19;Hpy188III:22;ScrFI:16;BslI:15;BstYI:24;PflMI:15	1
+rs149553138	2	GGCAGCACTACCAGCGGCGCAGG*TGCAGAGCCACCGCCTGGGT*CCAGATCCGCCCCAGCACTTACC	chr19:45169169	4	0	0/0	0/0	0/0	11/10	PspGI:14;StyD4I:14;BstNI:16;BsaJI:15;ScrFI:16;BslI:15;PflMI:15	2
+rs149553138	3	CCAGCGGCGCAGGTGCAGAGCCA*CCGCCTGGGTCCAGATCCGCCCCA*GCACTTACCAGTGTGGGACCTGG	chr19:45169179	2	0	0/0	0/0	2/1	21/6	PspGI:4;NlaIV:10;AlwI:9;BstNI:6;StyD4I:4;BsaJI:5;Sau96I:9;EciI:7;Hpy188III:12;ScrFI:6;AvaII:9;BstYI:14	5
+rs149553138	4	CCAGCGGCGCAGGTGCAGAGCCA*CCGCCTGGGTCCAGATC*CGCCCCAGCACTTACCAGTGTGG	chr19:45169179	1	0	0/0	0/0	2/0	21/10	PspGI:4;NlaIV:10;BstNI:6;StyD4I:4;BsaJI:5;Sau96I:9;Hpy188III:12;ScrFI:6;AvaII:9	6
+rs149553138	5	GCAGGTGCAGAGCCACCGCCTGG*GTCCAGATCCGCC*CCAGCACTTACCAGTGTGGGACC	chr19:45169187	3	0	0/0	0/0	2/2	38/12	Hpy188III:4;BstYI:6	9
+rs76971643	1	CCACAGCAAAGCTCCCAGAGGCA*GGGCCAGGCTGCACTCTGGTGGAACAC*GTCTGTGTCCCCACTCGCTAAGG	chr19:45169814	2	0	0/0	0/0	3/0	30/7	StyD4I:4;ScrFI:6;MslI:17;Sau96I:2;AleI:17;PspGI:4;ApeKI:9;TseI:9;Fnu4HI:10;BstNI:6	1
+rs76971643	2	CCAGAGGCAGGGCCAGGCTGCAC*TCTGGTGGAACAC*GTCTGTGTCCCCACTCGCTAAGG	chr19:45169828	1	0	0/0	0/0	0/0	110/7		2
+rs111243475	1	CCAGCACTCTGGGAGGCTGAGGC*GATTATAGGCATGAGCCA*CCGCAACTGGTCAATTACACCCT	chr19:45188270	1	0	329/0	17/0	0/2	>=0/4		1
+rs11667509	1	GTTGGGTGAAAAGACATCTAAGG*GTCTTTCTATC*CCAGGGGTGTGTGGTCCCAGGCA	chr19:45212930	3	0	0/0	0/0	0/1	13/21		1
+rs11667509	2	TGTACAGGGAGTTTGGGGTTGGG*TGAAAAGACATCTAAGGGTCTTTCTATC*CCAGGGGTGTGTGGTCCCAGGCA	chr19:45212913	1	0	0/0	0/0	0/1	26/21	DdeI:13	2
+rs11667509	3	CCACCGTGCCTGGCGTTTGTTTC*CCTTCTGTACAGGGAGTTTGGG*GTTGGGTGAAAAGACATCTAAGG	chr19:45212885	2	0	0/0	0/0	53/0	>=273/13	HpyAV:12;BsrGI:7	4
+rs10415392	1	CCGCTCACTGTAACCTCTGCCTC*AGACTGCACCACTGCACTCCAG*CCTGGGTGACGGAGCGAGACTCT	chr19:45216506	1	0	47/100	291/373	94/246	>=0/>=0	BtsI:10;BtsIMutI:10;TspRI:17;BpmI:3	1
+rs346750	1	GGTGCCGGAGCTCTTATTCTAGG*ACTGCAAGCGT*CCATGGTACTAAGGTGCTGGAAC	chr19:45233945	1	0	0/0	0/0	0/0	1/1	Cac8I:7	1
+rs11673093	1	AGCGGGGCTGCCCATCCCCAGGG*CTGCCTGCCCGCCGGCCCGGGGCCCAG*CCCAGCCGGAAGGGGGCCAGGCC	chr19:45238787	4	0	0/0	0/0	1/3	22/17	EcoO109I:21;AvaI:17;Sau96I:15,21,22;ApaI:25;NgoMIV:12;TspMI:17;BslI:19;BsaJI:17,18;NlaIV:22,23;NciI:18,19;BanII:25;ScrFI:18,19;StyD4I:16,17;XmaI:17;BsrFI:12;Cac8I:6,10,14;PspOMI:21;SmaI:19;FauI:17;Bsp1286I:25;NaeI:14;BsoBI:17;BaeGI:25	1
+rs11673093	2	GAGCGGGGCTGCCCATCCCCAGG*GCTGCCTGCCCGCCGGCCCGGGGCCCAG*CCCAGCCGGAAGGGGGCCAGGCC	chr19:45238786	3	0	0/0	0/0	1/3	25/17	EcoO109I:22;AvaI:18;NaeI:15;PspOMI:22;Sau96I:16,22,23;TseI:2;ApaI:26;ApeKI:2;TspMI:18;BslI:20;BsaJI:18,19;NlaIV:23,24;NciI:19,20;BanII:26;ScrFI:19,20;StyD4I:17,18;Fnu4HI:3;XmaI:18;BsrFI:13;Cac8I:7,11,15;SmaI:20;FauI:18;Bsp1286I:26;NgoMIV:13;BsoBI:18;BaeGI:26	2
+rs11673093	3	GAGCGGGGCTGCCCATCCCCAGG*GCTGCCTGCCCGCCGGCCCGGGGC*CCAGCCCAGCCGGAAGGGGGCCA	chr19:45238786	2	0	0/0	0/0	1/1	25/28	Cac8I:7,11,15;TseI:2;ScrFI:19,20;BsaJI:18,19;ApeKI:2;AvaI:18;NgoMIV:13;TspMI:18;BsrFI:13;Sau96I:16;FauI:18;SmaI:20;XmaI:18;NaeI:15;BslI:20;BsoBI:18;NciI:19,20;Fnu4HI:3;StyD4I:17,18	4
+rs11673093	4	CCATCCCCAGGGCTGCCTGCCCG*CCGGCCCGGGGCCC*AGCCCAGCCGGAAGGGGGCCAGG	chr19:45238798	1	0	0/0	0/0	2/2	73/34	EcoO109I:10;Bsp1286I:14;ApaI:14;AvaI:6;StyD4I:5,6;BsaJI:6,7;TspMI:6;ScrFI:7,8;PspOMI:10;Sau96I:4,10,11;SmaI:8;XmaI:6;NlaIV:11,12;BslI:8;BsoBI:6;NciI:7,8;BanII:14;BaeGI:14	7
+rs345421	1	CCCAAGCTTTTGTGGCAGAAACA*AGGCCAGCAGATGGGGGA*GCGGATGGGGGGGAGGGGACAGG	chr19:45266440	2	0	0/0	0/0	0/2	18/149	BslI:11;BccI:5;PflMI:11;Cac8I:6	1
+rs345421	2	CCCAAGCTTTTGTGGCAGAAACA*AGGCCAGCAGATGGGGGAGCG*GATGGGGGGGAGGGGACAGGAGG	chr19:45266440	3	0	0/0	0/1	0/14	18/264	BslI:11;BccI:5;PflMI:11;Cac8I:6	2
+rs345421	3	CCCAAGCTTTTGTGGCAGAAACA*AGGCCAGCAGA*TGGGGGAGCGGATGGGGGGGAGG	chr19:45266440	1	0	0/0	0/1	0/13	18/272	Cac8I:6	3
+rs183442275	1	GGAGCTGCCGCTGTCACCTACGG*TTTTTAAGTTATTACA*CCCCGACCCTCCTCCTGTCAGCC	chr19:45303256	1	0	0/0	0/0	0/3	10/22		1
+rs183442275	2	GGAGCTGCCGCTGTCACCTACGG*TTTTTAAGTTATTACACCCCGAC*CCTCCTCCTGTCAGCCCCCTCAC	chr19:45303256	3	0	0/0	0/0	0/10	10/75		3
+rs183442275	3	GGAGCTGCCGCTGTCACCTACGG*TTTTTAAGTTATTACACC*CCGACCCTCCTCCTGTCAGCCCC	chr19:45303256	2	0	0/0	0/2	0/5	10/80		4
+rs3865444	1	CCTATATCCTGCTGGACTAAACA*CCCCATGGATCTAG*GTGAGGCTGCGACTCGGGCCAGG	chr19:51224680	2	0	0/0	0/0	1/0	7/16	NcoI:4;BtgI:4;StyI:4;BstYI:8;BsaJI:4	1
+rs3865444	2	CCTATAGAATCCTATATCCTGCT*GGACTAAACACCCCATGGATCTAG*GTGAGGCTGCGACTCGGGCCAGG	chr19:51224670	1	0	0/0	0/0	2/0	9/16	NcoI:14;BtgI:14;StyI:14;BstYI:18;BsaJI:14	2
+rs55636820	1	GTGGGGTCTTCAACATTCGGGGG*CTTCAGAACCA*CCCGGGGCACTTGGGTTAAAACT	chr2:127054643	1	0	0/0	0/0	0/0	3/6	Hpy188I:6	1
+rs55636820	2	CCAAGCTTCAAAGTGGGGTCTTC*AACATTCGGGGGCTTCAGAACCACCCGG*GGCACTTGGGTTAAAACTGCAGG	chr2:127054631	5	0	0/0	0/0	4/1	5/20	NciI:26;Hpy188I:18;ScrFI:26;StyD4I:24	3
+rs55636820	3	CGGGGGCTTCAGAACCACCCGGG*GCACTTGGGTTAAAACTGCAGG*CCCCTGACCCCTCCCAGCAGCCC	chr2:127054660	2	0	0/0	0/0	1/9	13/114	PstI:21;SfcI:17	4
+rs55636820	4	GGGGGCTTCAGAACCACCCGGGG*CACTTGGGTTAAAACTGCAGG*CCCCTGACCCCTCCCAGCAGCCC	chr2:127054661	3	0	0/0	0/0	1/9	19/114	PstI:20;SfcI:16	5
+rs55636820	5	GGGGGCTTCAGAACCACCCGGGG*CACTTGGGTTAAAACTGCAGGC*CCCTGACCCCTCCCAGCAGCCCC	chr2:127054661	4	0	0/0	0/0	1/14	19/129	PstI:20;SfcI:16;Cac8I:20	7
+rs1060743	1	CCCTTACCTTGGCAATTTTGGCT*TCATCCTTCTTTTTGGCAGTTT*GAAGGGACTCGTAGTGGTGCCGG	chr2:127068917	1	0	0/0	0/0	0/0	11/8	HpyAV:16;BtsCI:2	1
+rs11694743	1	CCTTGTTCTCCCTCCATCCCCCG*CCCCGCCCCACCCCAGAGCTGC*TGCTTCACCCTCAGGTTGGGAGG	chr2:127085016	2	0	0/0	0/0	3/4	51/14	FauI:11;Fnu4HI:20;TseI:19;BbvI:6;ApeKI:19	1
+rs11694743	2	CCTTGTTCTCCCTCCATCCCCCG*CCCCGCCCCACCCCAGAGC*TGCTGCTTCACCCTCAGGTTGGG	chr2:127085016	1	0	0/0	0/0	3/2	51/19	FauI:11	2
+rs10929006	1	CCGAGATTGCACCACTGCACTCC*CTCACCGCAACCTCTGCCTCC*CCGGTTCAAGCAATTCCCCTGCC	chr2:127086556	2	0	1061/27	57/341	0/4	>=0/>=0	BstAPI:14;MwoI:14	1
+rs10929006	2	CCGAGATTGCACCACTGCACTCC*CTCACCGCAACCTCTG*CCTCCCCGGTTCAAGCAATTCCC	chr2:127086556	1	1	1061/16	57/318	0/349	>=0/>=0		2
+rs13032148	1	CCCTGAACAGAGGAGCCGCGGCT*GCTGGGAGAACGCGCC*CGGAGCCCCCTCCTTTTCCAGGG	chr2:127107484	3	0	0/0	0/0	0/0	7/11	BseYI:2	1
+rs13032148	2	GGCCCTGAACAGAGGAGCCGCGG*CTGCTGGGAGAACGCGCCCGGAGCCC*CCTCCTTTTCCAGGGGCTCACCT	chr2:127107482	2	0	0/0	0/0	2/3	22/23	Bsp1286I:26;BanII:26;BseYI:4;NciI:19;NlaIV:23;ScrFI:19;StyD4I:17;MwoI:21	3
+rs13032148	3	GGCCCTGAACAGAGGAGCCGCGG*CTGCTGGGAGAACGCGCCCGGAGC*CCCCTCCTTTTCCAGGGGCTCAC	chr2:127107482	1	0	0/0	0/0	2/0	22/33	ScrFI:19;MwoI:21;BseYI:4;StyD4I:17;NciI:19	5
+rs13032148	4	GGGGGCGCGGCCCTGAACAGAGG*AGCCGCGGCTGCTGGGAGAACGCGCCCGGAG*CCCCCTCCTTTTCCAGGGGCTCA	chr2:127107474	4	0	0/0	0/0	0/3	6/63	BseYI:12;BsaJI:4;SacII:7;ApeKI:9;StyD4I:25;NciI:27;TseI:9;ScrFI:27;MspA1I:6;MwoI:9;BtgI:4;Fnu4HI:4,7,10	6
+rs57891859	1	CCTCCCTCCTGGTCCCCACCTCT*CAGAAGCAGCCTCCGGGTTTAT*CGTTCCCAAGCACACCCACAGGG	chr2:134706994	1	0	0/0	0/0	7/1	123/7	StyD4I:13;Fnu4HI:8;ScrFI:15;BbvI:19;TseI:7;NciI:15;ApeKI:7	1
+rs6127744	1	AGCTATCCCCCACAGCTGGTTGG*GGATAGAACTTGAG*CCTGGCTTGGAAGAATGGGCACC	chr20:56411177	1	0	0/0	0/0	0/2	6/11	SmlI:10	1
+rs6127744	2	GATAGAACTTGAGCCTGGCTTGG*AAGAATGGGCA*CCATTTTGTCTAAATAAAAATGC	chr20:56411201	2	0	0/0	0/1	0/8	13/64		3
+rs75087725	1	GGTACAGCTCACTCAGGCGCTGG*CACCGGCTCACAGGCT*CCAGGGTGGAGATGCTGTTGACA	chr21:44333201	1	0	0/0	0/0	2/0	3/15	BsrFI:3	1
+rs45486093	1	CGGGGGCGGCAGTGCCACACGGG*CCCACAGAGCTGTCCCCTGT*CCCCGGAGGGCCACGCAGTACCT	chr4:881843	5	0	0/0	0/0	1/0	12/9		1
+rs45486093	2	CCACACGGGCCCACAGAGCTGTC*CCCTGTCCCCGGAG*GGCCACGCAGTACCTTTTGTGGG	chr4:881857	6	0	0/0	0/0	1/0	21/4	BsaJI:8;NciI:10;BslI:9;ScrFI:10;StyD4I:8	2
+rs45486093	3	GCGGGGGCGGCAGTGCCACACGG*GCCCACAGAGCTGTCCCCTGT*CCCCGGAGGGCCACGCAGTACCT	chr4:881842	4	0	0/0	0/0	2/0	16/9	MwoI:8	5
+rs45486093	4	GAGCTGTCCCCTGTCCCCGGAGG*GCCACGCAGTA*CCTTTTGTGGGATGGCCAGATGC	chr4:881872	8	0	0/0	0/0	2/1	14/11		6
+rs45486093	5	GCGGGGGCGGCAGTGCCACACGG*GCCCACAGAGCTGTC*CCCTGTCCCCGGAGGGCCACGCA	chr4:881842	3	0	0/0	0/0	2/0	16/12	MwoI:8	7
+rs45486093	6	AGGAGACACCACAGCGGGGGCGG*CAGTGCCACACGGGCCCACAGAGCTGTC*CCCTGTCCCCGGAGGGCCACGCA	chr4:881829	2	0	0/0	0/0	2/0	25/12	Bsp1286I:17;BglI:12;BanII:17;BaeGI:17;MwoI:12,21;TspRI:8;NlaIV:15;PspOMI:13;ApaI:17;BtsIMutI:8;Sau96I:13,14	10
+rs45486093	7	AGGAGACACCACAGCGGGGGCGG*CAGTGCCACACGGG*CCCACAGAGCTGTCCCCTGTCCC	chr4:881829	1	0	0/0	0/0	2/2	25/22	TspRI:8;BtsIMutI:8	12
+rs45486093	8	CCCACAGAGCTGTCCCCTGTCCC*CGGAGGGCCACGCAGTACCTTTTG*TGGGATGGCCAGATGCCTGGTGG	chr4:881866	7	0	0/0	0/0	2/5	22/73	Sau96I:6	15
+rs3775121	1	CCCAGGGTTAGATGCAGACGCTC*TCCAACCACAGCGCCC*TGCAGACCCCAGTCCTAGAGAGG	chr4:899713	1	0	0/0	0/1	0/1	4/17	HaeII:15	1
+rs3775121	2	CCAGGGTTAGATGCAGACGCTCT*CCAACCACAGCGCCC*TGCAGACCCCAGTCCTAGAGAGG	chr4:899714	2	0	0/0	0/1	0/1	4/17	HaeII:14	2
+rs6599388	1	GCCTCAGTTTCTGTTTCCCCAGG*CCCCCGCCGTCTCTGTCTCCTCACT*CCCCGCCGTTTGTTGCTGCCTCA	chr4:945270	1	0	0/0	0/0	1/0	37/5	BsmAI:15,21;BsmBI:15;BseRI:9;BcoDI:15,21;Esp3I:15;FauI:12	1
+rs6599388	2	GCCTCAGTTTCTGTTTCCCCAGG*CCCCCGCCGTCTCTGTCTCCTCACTCC*CCGCCGTTTGTTGCTGCCTCAGC	chr4:945270	2	0	0/0	0/0	1/0	37/12	BsmAI:15,21;BsmBI:15;BseRI:9;BcoDI:15,21;Esp3I:15;FauI:12	3
+rs34311866	1	GCATCTTCCAGCTGGCCATGTGG*ACCACGGCGCTGCTGCA*CCAGGCGGAGACGCTGCAGCCCT	chr4:958141	2	0	0/0	0/0	1/0	23/19	Fnu4HI:11,14;BtgI:3;ApeKI:10,13;TseI:10,13;HaeII:11;BsaJI:3	1
+rs34311866	2	CCATCATCTTCCTGGCCAGCATC*TTCCAGCTGGCCATGTG*GACCACGGCGCTGCTGCACCAGG	chr4:958123	1	0	0/0	0/0	4/1	54/6	EaeI:9;MspA1I:7;PvuII:7;Cac8I:9;MscI:11	2
+rs4690229	1	CCCCCAGCACCTCAGAATGAGAC*TTGTTTGGAGACA*GAGTCTTTACAGAGAAAATCAGG	chr4:976917	1	1	3/1	27/2	319/1	>=34/28	BsmAI:3;BcoDI:3	1
+rs4690229	2	CCCCAGCACCTCAGAATGAGACT*TGTTTGGAGACA*GAGTCTTTACAGAGAAAATCAGG	chr4:976918	2	1	2/1	32/2	320/1	>=56/28	BsmAI:2;BcoDI:2	3
+rs4373155	1	CCTGATAGAGGTGCCATCAGTCT*GCACCACCTTGAAGCTGGTCTGTGT*GTATGCAGAACTGGTAACTGAGG	chr4:11021126	1	0	0/0	0/0	2/0	7/12	XcmI:12	1
+rs356162	1	CCAGCACCTCAGTACCAATAACA*GATATTTCATGTTATATAGTGG*GGTCATTAAGGACTTATTTGAGG	chr4:89775988	1	0	0/0	0/0	0/0	12/6		1
+rs33915496	1	CCTTTTTGTTCTATTTGGGTCCT*CAATGGACTGAAT*GATGCCCACCCATATTAGTGAGG	chr6:32616150	1	14	8/2	49/9	155/44	>=87/197		1
+rs143202663	1	CCAGCCTGGCAGCACATACGTCT*AGAGCCACCCC*AGGTTCTCACTTCACTCTCTGGG	chr6:40897479	1	0	0/0	0/0	0/2	3/44		1
+rs143332484	1	CCACAAGTTGTGCGTGCTGACCA*CACGCTGGCATG*GGCCCTTCTCTCCCAGCTGGCGG	chr6:41161444	1	0	0/0	0/0	0/3	2/33	Cac8I:7	1
+rs9395259	1	CCTGACCTCAGGTGATCTGCCCG*AGTTCGAGACCAG*CCTGGCTAACATGGTGAAAACCC	chr6:47440202	1	0	701/302	75/160	0/0	>=0/>=0	Hpy188III:6	1
+rs9268840	1	CCTACTTTTTTGCAGCAACAATC*ATGTCTTCACCCCATGGG*GTGGTGGAGTAAGGAGCCTGCGG	chr6:3793237	1	0	0/0	0/0	0/1	5/28	BsaJI:13;BtgI:13;StyI:13;NcoI:13	1
+rs9268840	2	CCTACTTTTTTGCAGCAACAATC*ATGTCTTCACCCCATGGGGTGGTGGAGTA*AGGAGCCTGCGGAGGCTCCCAGG	chr6:3793237	2	0	0/0	0/0	0/4	5/32	BsaJI:13;StyI:13;BtgI:13;PflMI:19;BslI:19;NcoI:13	3
+rs1980493	1	GATCCCAGTTTTTGTTTGGATGG*CTATCACCTTT*CCCCAGTGCATCCTGTGTTTTAC	chr6:3833494	1	0	0/0	0/0	1/0	6/13		1
+rs1980493	2	GATCCCAGTTTTTGTTTGGATGG*CTATCACCTTTCC*CCAGTGCATCCTGTGTTTTACCA	chr6:3833494	2	0	0/0	0/0	1/0	6/18		3
+rs3957148	1	CCATGTTAATCAGGCTCATCTCA*AACTCCTGACCTCGGG*AGCCACCTGCCTCGGCCTCCAGG	chr6:4127613	2	0	0/0	1/14	134/46	>=363/>=7	BslI:12;BsaJI:11;Hpy188III:6;BsoBI:12;AvaI:12	1
+rs3957148	2	CCTGATTAACATGGTGAAACCCC*CTCATCTCAAACTCCTGA*CCTCGGGAGCCACCTGCCTCGGC	chr6:4127604	1	0	48/0	296/22	27/338	>=0/>=67	Hpy188III:15	3
+rs33915496	1	CCCTTGCTGGGCAAGGCTGCCTC*TCCCAGCACTGCTGGCAGACAGGTTAGCTCA*TGCCTGCATGCATGTCACTCAGG	chr6:3854536	1	0	0/0	0/0	0/0	16/15	Cac8I:14;BseYI:3;BtsI:7;TspRI:14;BtsIMutI:7;MwoI:13	1
+rs33915496	2	GCTGCCTCTCCCAGCACTGCTGG*CAGACAGGTTAGCTCATG*CCTGCATGCATGTCACTCAGGTC	chr6:3854551	2	0	0/0	0/0	1/0	97/6		3
+rs9268544	1	CCTACTGGCAAGACCTCATTGCG*CACGGACTAGTAACAGTAAAACTTCTTCAG*TGAAGGCTGAGCAGGGGATGAGG	chr6:3721878	1	0	0/0	0/0	0/6	5/79	MboII:17;HpyCH4III:16;SpeI:7;AcuI:11	1
+rs9275111	1	CCAGTGGAAGGAGGTGCAAAGTC*ATGTTGCAGGG*GGCTTCGGTACAGGACAGGTGGG	chr6:4101447	1	0	0/0	0/0	2/1	15/6		1
+rs9268544	1	CCTTAACTAGACATAAAGGTTCT*GATTGTAAATACA*CCAATCGGCACTCTGTATCTAGC	chr6:3758603	1	14	7/308	338/0	35/0	>=0/>=0		1
+rs2858331	1	AGAAATTTCAAAGGACTTACAGG*ATGGATGGTGATTATAACGTTATGAAATGAC*CCTTTGATAATGTATTCAATTCT	chr6:4012181	1	0	0/0	0/0	3/2	27/29	FokI:17;PsiI:15;HphI:20;AclI:18;BtsCI:10	1
+rs149839148	1	GCTGGTCCAGCCGAGTGCACAGG*ATACGGCTGCTTCCTCC*CCTGGCTGCTTTCCTCTGGTGAC	chr6:3813282	1	0	0/0	0/1	0/5	14/33	TseI:7;Fnu4HI:8;ApeKI:7	1
+rs9275111	1	GAGGCGTTGGGACTACATCTTGG*CTCTTCAGGGCTAAAGTCTTCTTTT*CCTAAGAACCAGATCTGCACCCC	chr6:3876218	1	0	0/0	0/0	0/0	4/11	EarI:8;BbsI:10;MboII:10	1
+rs9275111	2	GACTACATCTTGGCTCTTCAGGG*CTAAAGTCTTCTTTT*CCTAAGAACCAGATCTGCACCCC	chr6:3876228	2	0	0/0	0/0	1/0	8/11		3
+rs9275614	1	GACATAGAGTCAGAAGCCCTAGG*TCCCAGCTCTGGC*CCCACTGTGAACAAGCTGATTTC	chr6:3910680	1	0	0/0	1/0	7/4	66/19	BseYI:3;BslI:9	1
+rs1980493	1	CCTTTGTGACTTATCACAGCAGC*TCTGACATTTATTAAT*GCATAACTATAAGCCAGGCACGG	chr6:3711308	1	0	0/0	0/0	0/0	10/50	AseI:13;Hpy188I:4	1
+rs3957148	1	GCCTCTGAGGCAGAAGTATTAGG*TTGGTGCAAAAGTAACTGCAGTTTTG*CCTTACTTCTAATACCATGCTCC	chr6:4114449	1	0	0/0	0/0	1/0	15/2	SfcI:17;PstI:21	1
+rs3935067	1	GATGAATGGATCTCAGATTGAGG*ATGCTTTTCTGCCTTTTCTATC*CCTCCCCAAGCAAAGCACTGGTC	chr7:143407217	2	0	0/0	0/0	1/0	18/11		1
+rs3935067	2	TGCAACTTCATTGGGATGAATGG*ATCTCAGATTGAGGATGCTTTTCTG*CCTTTTCTATCCCTCCCCAAGCA	chr7:143407203	1	0	0/0	0/0	0/3	17/29	DdeI:4;SfaNI:5;BtsCI:20;Hpy188I:7;BspCNI:17	2
+rs755951	1	CCCTACAGCTTACCTTCTACCCT*CTTATAATCACA*GGATCCCTTCACTGGCATGTAGG	chr8:27369222	5	0	0/0	0/0	1/0	13/8	PsiI:5	1
+rs755951	2	CCCTCTTATAATCACAGGATCCC*TTCACTGGCATGTAGGGGGACCT*GAGATGACCAGGCCCTGTGCTGG	chr8:27369241	2	0	0/0	0/0	0/1	11/31	PpuMI:19;MslI:8;NspI:13;BtsIMutI:3;NlaIV:20;EcoO109I:19;BsrI:10;AvaII:19;Sau96I:19;TspRI:10	3
+rs755951	3	CCTCTTATAATCACAGGATCCCT*TCACTGGCATGTAGGGGGACCT*GAGATGACCAGGCCCTGTGCTGG	chr8:27369242	3	0	0/0	0/0	1/1	11/31	PpuMI:18;MslI:7;NspI:12;BtsIMutI:2;NlaIV:19;EcoO109I:18;BsrI:9;AvaII:18;Sau96I:18;TspRI:9	4
+rs755951	4	CCTTCTACCCTCTTATAATCACA*GGATCCCTTCACTGGCATGTAGGGGGACCT*GAGATGACCAGGCCCTGTGCTGG	chr8:27369234	1	0	0/0	0/0	0/1	21/31	AvaII:26;MslI:15;HpyAV:17;NspI:20;BtsIMutI:10;AlwI:10;NlaIV:4,27;EcoO109I:26;TspRI:17;BsrI:17;Sau96I:26;BamHI:2;BslI:12;BstYI:2;PpuMI:26	5
+rs755951	5	CCTTCACTGGCATGTAGGGGGAC*CTGAGATGACCAGGCCCTG*TGCTGGGCCTGGGGGATCCAGGG	chr8:27369262	9	0	0/0	0/0	0/6	7/60	AlwNI:17;StyD4I:10;EcoO109I:14;ScrFI:12;DdeI:2;Sau96I:14;PspGI:10;BstNI:12	9
+rs755951	6	GGATCCCTTCACTGGCATGTAGG*GGGACCTGAGATGACCAGGC*CCTGTGCTGGGCCTGGGGGATCC	chr8:27369257	6	0	0/0	0/0	0/5	8/72	BsmFI:16;AvaII:3;BstNI:17;NlaIV:4;EcoO109I:3;ScrFI:17;PspGI:15;DdeI:7;StyD4I:15;PpuMI:3;Sau96I:3	10
+rs755951	7	GATCCCTTCACTGGCATGTAGGG*GGACCTGAGATGACCAGGC*CCTGTGCTGGGCCTGGGGGATCC	chr8:27369258	7	0	0/0	0/0	1/5	7/72	AvaII:2;StyD4I:14;ScrFI:16;DdeI:6;Sau96I:2;PspGI:14;BstNI:16	11
+rs755951	8	CCTTCACTGGCATGTAGGGGGAC*CTGAGATGACCAGGCCCT*GTGCTGGGCCTGGGGGATCCAGG	chr8:27369262	8	0	0/0	0/0	0/3	7/91	StyD4I:10;DdeI:2;EcoO109I:14;ScrFI:12;PspGI:10;Sau96I:14;BstNI:12	14
+rs755951	9	CCTCTTATAATCACAGGATCCCT*TCACTGGCATGTAGGGGGACCTGAGATGACC*AGGCCCTGTGCTGGGCCTGGGGG	chr8:27369242	4	0	0/0	0/15	1/23	11/197	BsmFI:31;PpuMI:18;NspI:12;BtsIMutI:2;NlaIV:19;EcoO109I:18;Sau96I:18;BsrI:9;AvaII:18;BspCNI:14;MslI:7;TspRI:9;DdeI:22	16
+rs2640724	1	CCAGGACTTGATACCAGTCAGTC*CTTGTGTTGGCCACAGCCCC*TGGGCCCCTTGCAGAGCTTTGGG	chr8:27558028	1	0	0/0	0/0	2/1	22/19	EaeI:9;MscI:11	1
+rs2640724	2	CCAGTCAGTCCTTGTGTTGGCCA*CAGCCCCTGGGCCCCTTGCAGAGCTT*TGGGACAGTGAGTGTGGAGAAGG	chr8:27558041	2	0	0/0	0/0	0/4	5/76	BaeGI:14;ScrFI:8;ApaI:14;Sau96I:10,11;AlwNI:7;Bsp1286I:14;PspGI:6;BstNI:8;BsaJI:6,7;BanII:14;StyD4I:6;NlaIV:12,13;PspOMI:10;EcoO109I:11	3
+rs7831810	1	CCTTCGAGGACAGGAGCATTCCA*CGGGTGAGAGGACGCAGA*GGCTGCCATGAAGGAAACAAAGG	chr8:27572975	2	0	0/0	0/0	0/1	0/21	HphI:16	1
+rs7831810	2	AGGGGACACCCAGGGAGAATGGG*TTTGGGTGACAAGAGGG*CCTTCGAGGACAGGAGCATTCCA	chr8:27572935	1	0	0/0	0/0	2/0	17/0	Tsp45I:6	2
+rs4732729	1	TGCCTACTGCGCTTGGCGCTTGG*GAACAGAATCA*CCGGGGAGTCCCAGGGGGATGAC	chr8:27603941	1	0	0/0	0/0	0/2	6/18	TfiI:7;HinfI:7	1
+rs485902	1	CCTTCAACTGGGCAAGTGCCCCA*AGAGGTGGGCTTTCAATGTCGGA*GAGCCAAAAAACTCCACCCTTGG	chr8:27632411	1	0	0/0	0/0	0/1	5/39	Hpy188I:22	1
+rs485902	2	TGGGCAAGTGCCCCAAGAGGTGG*GCTTTCAATGTCGGAGAG*CCAAAAAACTCCACCCTTGGATC	chr8:27632419	2	0	0/0	0/1	0/5	16/18	Hpy188I:14	2
+rs485902	3	GGGCAAGTGCCCCAAGAGGTGGG*CTTTCAATGTCGGAGAG*CCAAAAAACTCCACCCTTGGATC	chr8:27632420	3	0	0/0	0/1	0/5	22/18	Hpy188I:13	4
+rs485902	4	GGGCAAGTGCCCCAAGAGGTGGG*CTTTCAATGTCGGAGAGCCAAAAAACTCCA*CCCTTGGATCATGCTAACCCTGC	chr8:27632420	4	0	0/0	0/4	0/31	22/42	Hpy188I:13	6
+rs112136718	1	CCGCCAGGATGCGGTTCATCTCC*TCGTCGAAGTAGCC*GCAGCGGTAGGCCACGTCCACGG	chr8:143868096	1	1	0/0	2/0	1/7	3/4	Hpy99I:7	1
+rs112136718	2	CCAGGATGCGGTTCATCTCCTCG*TCGAAGTAGCC*GCAGCGGTAGGCCACGTCCACGG	chr8:143868099	2	7	0/0	2/0	8/7	4/4		3
+rs112136718	3	CGCTGGGGTCCGCCAGGATGCGG*TTCATCTCCTCGTCGAAGTAG*CCGCAGCGGTAGGCCACGTCCAC	chr8:143868087	3	7	0/0	2/0	2/7	16/4	Hpy99I:16	4
+rs148703839	1	CCCATTATTTTGGGAAGCTCCAC*CCCTGTGGCTTTGCAGGGTACAGCCTCCC*CCAGCCCATGAAAGCAGCCAGCA	chr9:27465373	1	2	0/5	0/299	4/2	71/>=0		1
+rs148703839	2	CCATTATTTTGGGAAGCTCCACC*CCTGTGGCTTTGCAGGGTACAGCCTCCC*CCAGCCCATGAAAGCAGCCAGCA	chr9:27465374	2	3	0/5	0/299	5/2	64/>=0		2
+rs148703839	3	GAAGTGGGTTCCCATTATTTTGG*GAAGCTCCACC*CCTGTGGCTTTGCAGGGTACAGC	chr9:27465363	3	10	0/317	0/6	13/0	142/>=0		5
+rs78752429	1	CCTCAGAATCATAGTGGGAGGCA*GAAGGCACTTCTTATAC*CCTCATTTTCTCTTGCTGCTGCC	chr9:27466643	1	13	6/146	150/116	154/20	>=34/>=0		1
+rs4879515	1	GAGACCTAACATTAAAGGACGGG*AAAAACATTAAATAAT*CCAAACATAAAGCACATGGAGCC	chr9:27482218	1	0	0/0	0/0	1/1	6/6		1

data/E-CRISP/E-CRISP_NGG.csv

@@ -0,0 +1,461 @@
+Name,Length,Start,End,Strand,Nucleotide sequence,Gene Name,Transcripts,Transcript:: Exon,Number of Cpg Islands hit,Sequence around the cutside,%A %C %T %G,S-Score,A-Score,E-Score,percent of total transcripts hit,Target,Match-start,Match-end,Matchstring,Editdistance,Number of Hits,Direction,CDS_score,Exon_Score,seed_GC,Doench_Score,Xu_score,Chromosome,Genomic start,Genomic End
+rs10444323,23,21,44,minus,GGTGAATTACATGGAGGAGA NGG,NA,NA,,NA,NA,24 44 28 4,100,0,71.7233,NA,ENSG00000080854::IGSF9B,32697,32720,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.445576116548473,0.4405890676,,-479,-456
+rs12726330,23,26,49,plus,GGTACTGGGAAGGCGCTCGG NGG,NA,NA,,NA,NA,20 16 12 50,100,0,56,NA,ENSG00000169241::SLC50A1,348,371,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0,0,,-474,-451
+rs12726330,23,12,35,plus,GAGGTCTGGACCAGGGTACT NGG,NA,NA,,NA,NA,24 16 16 44,100,0,50.9854,NA,ENSG00000169241::SLC50A1,334,357,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.00798846125214639,-0.0587156356,,-488,-465
+rs75548401,23,23,46,minus,GTACAGCCACAGCATCATCA NGG,NA,NA,,NA,NA,12 20 32 36,80,0,69.6023,NA,ENSG00000262446::GBA,1796,1819,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0.766901745678145,0.2132149904,,-477,-454
+rs75548401,23,23,46,minus,GTACAGCCACAGCATCATCA NGG,NA,NA,,NA,NA,12 20 32 36,80,0,69.6023,NA,ENSG00000177628::GBA,1792,1815,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0.766901745678145,0.2132149904,,-477,-454
+rs75548401,23,17,40,plus,GGCTTACCGTGATGATGCTG NGG,NA,NA,,NA,NA,12 20 32 36,48.6956,0,58.6368,NA,ENSG00000262446::GBA,1790,1813,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.123796371619103,0.3080480824,,-483,-460
+rs75548401,23,17,40,plus,GGCTTACCGTGATGATGCTG NGG,NA,NA,,NA,NA,12 20 32 36,48.6956,0,58.6368,NA,ENSG00000177628::GBA,1786,1809,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.123796371619103,0.3080480824,,-483,-460
+rs75548401,23,17,40,plus,GGCTTACCGTGATGATGCTG NGG,NA,NA,,NA,NA,12 20 32 36,48.6956,0,58.6368,NA,ENSG00000160766::GBAP1,1735,1758,MMMMMMMXMMMMMMMMMMMMMMM,1,4,fw,0,0,0.5,0.123796371619103,0.3080480824,,-483,-460
+rs75548401,23,17,40,plus,GGCTTACCGTGATGATGCTG NGG,NA,NA,,NA,NA,12 20 32 36,48.6956,0,58.6368,NA,ENSG00000263231::RP11-263K19.8,1188,1211,MMMMMMMXMMMMMMMMMMMMMMM,1,4,fw,0,0,0.5,0.123796371619103,0.3080480824,,-483,-460
+rs10769263,23,0,23,plus,GAAGAGAGCAGAGCATTTCA NGG,NA,NA,,NA,NA,32 16 20 32,100,0,52.3576,NA,ENSG00000255197::RP11-750H9.5,12459,12482,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0,0.2178834552,,-500,-477
+rs202122669,23,20,43,minus,GCTGAAGCAGAGGCGGCCGA NGG,NA,NA,,NA,NA,12 44 20 24,100,0,67.1288,NA,ENSG00000186104::CYP2R1,14654,14677,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.179638809270434,0.3768027196,,-480,-457
+rs202122669,23,8,31,minus,GCGGCCGATGGGCTTCCCCC NGG,NA,NA,,NA,NA,12 40 8 40,100,0,66.3065,NA,ENSG00000186104::CYP2R1,14642,14665,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.176933805031672,0.3383919576,,-492,-469
+rs202122669,23,27,50,minus,GCCAGCTGCTGAAGCAGAGG NGG,NA,NA,,NA,NA,8 43 21 26,100,0,64.2018,NA,ENSG00000186104::CYP2R1,14661,14684,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0.5100905692,,-473,-450
+rs202122669,23,4,27,plus,GGCCCCGGGGGGAAGCCCAT NGG,NA,NA,,NA,NA,12 40 4 44,100,0,60.0781,NA,ENSG00000186104::CYP2R1,14638,14661,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.139120601804929,0.2647893664,,-496,-473
+rs202122669,23,26,49,plus,GCCGCCTCTGCTTCAGCAGC NGG,NA,NA,,NA,NA,8 41 20 29,100,0,52,NA,ENSG00000186104::CYP2R1,14660,14683,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-474,-451
+rs202122669,23,6,29,minus,GGCCGATGGGCTTCCCCCCG NGG,NA,NA,,NA,NA,12 44 4 40,100,0,39.3221,NA,ENSG00000186104::CYP2R1,14640,14663,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.9,0.0661064820441919,0,,-494,-471
+rs7912495,23,21,44,minus,GGACGTCTTACCTGGATATG NGG,NA,NA,,NA,NA,28 36 16 20,100,0,57.0813,NA,10,11676710,11676733,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.226262347359626,0.12780704,,-479,-456
+rs7912495,23,11,34,plus,GAAGTGCTTACCGCATATCC NGG,NA,NA,,NA,NA,28 24 24 24,100,0,56.5898,NA,10,11676700,11676723,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0329131562805056,0.2965803156,,-489,-466
+rs117027576,23,10,33,plus,GTGTTAAGTTACTTATTCTA NGG,NA,NA,,NA,NA,28 8 44 20,100,0,47.8434,NA,12,56922804,56922827,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.2,0.144446936506453,0.0477239908,,-490,-467
+rs564123,23,24,47,plus,GGGAAACCAAACCCACATCC NGG,NA,NA,,NA,NA,40 32 4 24,100,0,53.5717,NA,ENSG00000080854::IGSF9B,40957,40980,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0785864987004691,0,,-476,-453
+rs564123,23,13,36,minus,GTTTGGTTTCCCCCTGTATT NGG,NA,NA,,NA,NA,44 32 4 20,100,0,44.344,NA,ENSG00000080854::IGSF9B,40946,40969,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0.0340584198605274,-0.2168538964,,-487,-464
+rs564123,23,2,25,plus,GATAGAGAAACCCAAATACA NGG,NA,NA,,NA,NA,44 16 8 32,84.3478,0,54.3115,NA,ENSG00000080854::IGSF9B,40935,40958,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.4,0,0.3155759868,,-498,-475
+rs564123,23,2,25,plus,GATAGAGAAACCCAAATACA NGG,NA,NA,,NA,NA,44 16 8 32,84.3478,0,54.3115,NA,ENSG00000155974::GRIP1,205589,205612,MMMMMMMMMMMMXMMMMMMMMMM,1,2,rc,0,0,0.4,0,0.3155759868,,-498,-475
+rs4944549,23,22,45,minus,GGAGCCGAAGGCACTTGGCG NGG,NA,NA,,NA,NA,8 52 20 20,100,0,73.1958,NA,11,85941205,85941228,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.429832769190593,0.5299609232,,-478,-455
+rs4944549,23,23,46,minus,GGGAGCCGAAGGCACTTGGC NGG,NA,NA,,NA,NA,8 48 20 24,100,0,59.5232,NA,11,85941206,85941229,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0814800639660399,0.1946848496,,-477,-454
+rs4944549,23,5,28,minus,GCGGGGCAGAGCCCAATACA NGG,NA,NA,,NA,NA,8 40 28 24,100,0,51.3675,NA,11,85941188,85941211,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0.16837945918516,0,,-495,-472
+rs4944549,23,26,49,plus,GCCAAGTGCCTTCGGCTCCC NGG,NA,NA,,NA,NA,8 41 20 29,84.3478,0,56,NA,11,85941209,85941232,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.8,0,0,,-474,-451
+rs4944549,23,26,49,plus,GCCAAGTGCCTTCGGCTCCC NGG,NA,NA,,NA,NA,8 41 20 29,84.3478,0,56,NA,X,82372588,82372611,MMMMMMMMMMMMMMMMMMMMMMX,1,2,rc,0,0,0.8,0,0,,-474,-451
+rs4944549,23,27,50,minus,GCCAGGGAGCCGAAGGCACT NGG,NA,NA,,NA,NA,8 43 21 26,64.3478,0,53.5548,NA,11,85941210,85941233,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.5,0,0.1777433388,,-473,-450
+rs4944549,23,27,50,minus,GCCAGGGAGCCGAAGGCACT NGG,NA,NA,,NA,NA,8 43 21 26,64.3478,0,53.5548,NA,X,82372587,82372610,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.5,0,0.1777433388,,-473,-450
+rs4944549,23,27,50,minus,GCCAGGGAGCCGAAGGCACT NGG,NA,NA,,NA,NA,8 43 21 26,64.3478,0,53.5548,NA,ENSG00000253417::RP11-109J4.1,5678,5701,MMMMMMMMMMMXMMMMMMMMMMM,1,3,fw,0,0,0.5,0,0.1777433388,,-473,-450
+rs147767029,23,20,43,minus,GCGCCCAGCCCAGCCAGGCT NGG,NA,NA,,NA,NA,4 36 12 48,84.3478,0,63.5279,NA,ENSG00000101850::GPR143,28996,29019,MMMMMMMMMMMMMMMMMMMMXMM,1,2,rc,0,0,0.8,0.132968218033254,0.2434304976,,-480,-457
+rs147767029,23,20,43,minus,GCGCCCAGCCCAGCCAGGCT NGG,NA,NA,,NA,NA,4 36 12 48,84.3478,0,63.5279,NA,ENSG00000073712::FERMT2,93848,93871,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.8,0.132968218033254,0.2434304976,,-480,-457
+rs147767029,23,13,36,minus,GCCCAGCCAGGCTCGGACAG NGG,NA,NA,,NA,NA,4 36 24 36,84.3478,0,63.4501,NA,ENSG00000073712::FERMT2,93841,93864,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0.123570385004747,0.4489363744,,-487,-464
+rs147767029,23,13,36,minus,GCCCAGCCAGGCTCGGACAG NGG,NA,NA,,NA,NA,4 36 24 36,84.3478,0,63.4501,NA,ENSG00000145284::SCD5,64131,64154,MMMXMMMMMMMMMMMMMMMMMMM,1,2,rc,0,0,0.6,0.123570385004747,0.4489363744,,-487,-464
+rs113247976,23,24,47,minus,GCCTTCTGGTAGGAAGCCAA NGG,NA,NA,,NA,NA,20 40 20 20,100,0,58.2689,NA,ENSG00000155980::KIF5A,31918,31941,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0.3134467524,,-476,-453
+rs113247976,23,25,48,minus,GGCCTTCTGGTAGGAAGCCA NGG,NA,NA,,NA,NA,24 36 20 20,84.3478,0,58.1611,NA,ENSG00000155980::KIF5A,31919,31942,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0,0.3080550372,,-475,-452
+rs113247976,23,25,48,minus,GGCCTTCTGGTAGGAAGCCA NGG,NA,NA,,NA,NA,24 36 20 20,84.3478,0,58.1611,NA,ENSG00000206579::XKR4,420931,420954,MMMMMMMXMMMMMMMMMMMMMMM,1,2,rc,0,0,0.6,0,0.3080550372,,-475,-452
+rs147288664,23,17,40,plus,GACGTGAGCTGGAGCCATGT NGG,NA,NA,,NA,NA,16 24 20 40,100,0,53.3052,NA,ENSG00000197915::HRNR,8361,8384,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0661111362578136,0.099152526,,-483,-460
+rs147288664,23,6,29,plus,GCTGGAAGACTGACGTGAGC NGG,NA,NA,,NA,NA,24 16 16 44,84.3478,0,60.089,NA,ENSG00000197915::HRNR,8350,8373,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.176950716744749,0.2275001868,,-494,-471
+rs147288664,23,6,29,plus,GCTGGAAGACTGACGTGAGC NGG,NA,NA,,NA,NA,24 16 16 44,84.3478,0,60.089,NA,12,53371395,53371418,MMMMMMMMMMXMMMMMMMMMMMM,1,2,rc,0,0,0.6,0.176950716744749,0.2275001868,,-494,-471
+rs41292019,23,14,37,plus,GCTACTGCAAATGTCTTTCG NGG,NA,NA,,NA,NA,24 20 32 24,100,0,60.7507,NA,ENSG00000183735::TBK1,4045,4068,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.32147638303067,0.2160635348,,-486,-463
+rs12118655,23,8,31,plus,GAAATATTGCAGGGGCTATA NGG,NA,NA,,NA,NA,28 12 28 32,100,0,47.0816,NA,1,205694333,205694356,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0784203670944018,-0.2243391448,,-492,-469
+rs55661415,23,3,26,minus,GGTTGGTAGAATTCAGACTC NGG,NA,NA,,NA,NA,32 32 24 12,100,0,52.1162,NA,11,60184821,60184844,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.105810811191282,0,,-497,-474
+rs1491942,23,15,38,minus,GTGCTATACTTGACAACCCA NGG,NA,NA,,NA,NA,20 24 28 28,100,0,68.9052,NA,ENSG00000188906::LRRK2,30249,30272,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.514827689509768,0.3304345664,,-485,-462
+rs76763715,23,15,38,plus,GTACAGGAGGTTCTAGGGTA NGG,NA,NA,,NA,NA,28 12 20 40,40,0,57.7005,NA,ENSG00000160766::GBAP1,1330,1353,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.136046086484631,0.2489821228,,-485,-462
+rs76763715,23,15,38,plus,GTACAGGAGGTTCTAGGGTA NGG,NA,NA,,NA,NA,28 12 20 40,40,0,57.7005,NA,ENSG00000263231::RP11-263K19.8,783,806,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.136046086484631,0.2489821228,,-485,-462
+rs76763715,23,15,38,plus,GTACAGGAGGTTCTAGGGTA NGG,NA,NA,,NA,NA,28 12 20 40,40,0,57.7005,NA,ENSG00000262446::GBA,1385,1408,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.136046086484631,0.2489821228,,-485,-462
+rs76763715,23,15,38,plus,GTACAGGAGGTTCTAGGGTA NGG,NA,NA,,NA,NA,28 12 20 40,40,0,57.7005,NA,ENSG00000177628::GBA,1381,1404,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.136046086484631,0.2489821228,,-485,-462
+rs8050588,23,4,27,plus,GCCCAGCACACAGTAGGGAT NGG,NA,NA,,NA,NA,24 28 8 40,100,0,62.4048,NA,ENSG00000099364::FBXL19,3402,3425,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.161121058558899,0.3591238684,,-496,-473
+rs117618017,23,22,45,minus,GATGATACGCAACGGCTCGG NGG,NA,NA,,NA,NA,16 36 28 20,100,0,70.4292,NA,ENSG00000138613::APH1B,1682,1705,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.36129365254088,0.3601701892,,-478,-455
+rs117618017,23,25,48,minus,GAAGATGATACGCAACGGCT NGG,NA,NA,,NA,NA,12 36 32 20,100,0,61.2534,NA,ENSG00000138613::APH1B,1685,1708,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0.362672256,,-475,-452
+rs117618017,23,1,24,minus,GGCGATGGTGAAGACATAAA NGG,NA,NA,,NA,NA,16 44 32 8,100,0,48,NA,ENSG00000138613::APH1B,1661,1684,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0,0,,-499,-476
+rs1724425,23,25,48,minus,GAGGGATTTGTCTGGAAGAG NGG,NA,NA,,NA,NA,28 44 24 4,80,0,53.2594,NA,ENSG00000282456::RP11-105N13.4,82490,82513,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0,0.1629711892,,-475,-452
+rs1724425,23,25,48,minus,GAGGGATTTGTCTGGAAGAG NGG,NA,NA,,NA,NA,28 44 24 4,80,0,53.2594,NA,ENSG00000263715::RP11-105N13.4,82473,82496,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0,0.1629711892,,-475,-452
+rs80257887,23,20,43,plus,GGGTTGGGATTCAACAGCTG NGG,NA,NA,,NA,NA,20 16 24 40,100,0,61.3947,NA,ENSG00000273777::CEACAM20,15116,15139,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.208564977409522,0.3611721996,,-480,-457
+rs3764645,23,17,40,plus,GGCCGCTGAGGACCTGGCCC NGG,NA,NA,,NA,NA,16 32 8 44,100,0,62.2503,NA,ENSG00000064687::ABCA7,2701,2724,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0712560940785664,0.24126115,,-483,-460
+rs3764645,23,11,34,plus,GTTGGAGGCCGCTGAGGACC NGG,NA,NA,,NA,NA,12 28 16 44,100,0,58.3976,NA,ENSG00000064687::ABCA7,2695,2718,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0280089915620076,0.291873136,,-489,-466
+rs3764645,23,27,50,plus,GACCTGGCCCAGGAGGTACG NGG,NA,NA,,NA,NA,21 26 8 43,100,0,52,NA,ENSG00000064687::ABCA7,2711,2734,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-473,-450
+rs713522,23,15,38,minus,GCACATTTAGTGCTGGGGGC NGG,NA,NA,,NA,NA,24 44 16 16,68.6956,0,62.8431,NA,ENSG00000186868::MAPT,93502,93525,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.8,0.10201619916158,0.2401389112,,-485,-462
+rs713522,23,15,38,minus,GCACATTTAGTGCTGGGGGC NGG,NA,NA,,NA,NA,24 44 16 16,68.6956,0,62.8431,NA,ENSG00000276155::MAPT,40189,40212,MMMMMMMMMXMMMMMMMMMMMMM,1,3,rc,0,0,0.8,0.10201619916158,0.2401389112,,-485,-462
+rs713522,23,15,38,minus,GCACATTTAGTGCTGGGGGC NGG,NA,NA,,NA,NA,24 44 16 16,68.6956,0,62.8431,NA,ENSG00000277956::MAPT,93490,93513,MMMMMMMMMMMMMXMMMMMMMMM,1,3,fw,0,0,0.8,0.10201619916158,0.2401389112,,-485,-462
+rs3935637,23,21,44,plus,GGGAGGATCAGCTTGACCCC NGG,NA,NA,,NA,NA,24 24 12 40,100,0,56.5168,NA,ENSG00000167693::NXN,137661,137684,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.225840765718754,0,,-479,-456
+rs72973584,23,9,32,plus,GGGGATCGTTTGATCCCGGG NGG,NA,NA,,NA,NA,12 20 24 44,100,0,74.4282,NA,ENSG00000064687::ABCA7,5960,5983,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.580829085415646,0.4405840032,,-491,-468
+rs3098199,23,25,48,minus,GATCAATAAAGATTTCCTGA NGG,NA,NA,,NA,NA,28 20 40 12,100,0,54.928,NA,ENSG00000170236::USP50,28499,28522,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0,0.3464043168,,-475,-452
+rs35385129,23,15,38,minus,GTGCTCAATTACGGCAGCTC NGG,NA,NA,,NA,NA,24 32 20 24,100,0,55.3385,NA,ENSG00000073008::PVR,15113,15136,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0315425215290866,0.0353848016,,-485,-462
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,303,326,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,758,781,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,498,521,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,693,716,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,563,586,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,433,456,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,628,651,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs3935637,23,6,29,minus,GCTGCTGTGTAGTGGAGAAA NGG,NA,NA,,NA,NA,20 44 24 12,0,0,60.0272,NA,ENSG00000262905::RP5-1029F21.2,368,391,MMMMMMMMMMMMMMMMMMMMMMM,0,8,fw,0,0,0.5,0.501363594869377,0,,-494,-471
+rs34186148,23,23,46,plus,GCGCTTTCTAGCTCTAAAGT NGG,NA,NA,,NA,NA,20 20 32 28,68.6956,0,55.3373,NA,ENSG00000263715::RP11-105N13.4,155379,155402,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.4,0.366866071154999,0,,-477,-454
+rs34186148,23,23,46,plus,GCGCTTTCTAGCTCTAAAGT NGG,NA,NA,,NA,NA,20 20 32 28,68.6956,0,55.3373,NA,ENSG00000282456::RP11-105N13.4,155365,155388,MMXMMMMMMMMMMMMMMMMMMMM,1,3,fw,0,0,0.4,0.366866071154999,0,,-477,-454
+rs34186148,23,23,46,plus,GCGCTTTCTAGCTCTAAAGT NGG,NA,NA,,NA,NA,20 20 32 28,68.6956,0,55.3373,NA,CHR_HSCHR17_1_CTG5,46320407,46320430,MMMMMMMMMMMMMMMMMMMMXMM,1,3,rc,0,0,0.4,0.366866071154999,0,,-477,-454
+rs4588066,23,4,27,plus,GTATATTCTTATATGTAAGC NGG,NA,NA,,NA,NA,28 8 40 24,100,0,57.7038,NA,ENSG00000152214::RIT2,349751,349774,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.216499664706095,0.2686923124,,-496,-473
+rs34186148,23,15,38,plus,GTGTCAGGATGGGTCGGGGG NGG,NA,NA,,NA,NA,16 8 20 56,60,0,68.1828,NA,ENSG00000159842::ABR,7399,7422,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.120611612138257,0.4885323484,,-485,-462
+rs34186148,23,15,38,plus,GTGTCAGGATGGGTCGGGGG NGG,NA,NA,,NA,NA,16 8 20 56,60,0,68.1828,NA,ENSG00000278741::ABR,7398,7421,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.120611612138257,0.4885323484,,-485,-462
+rs34186148,23,15,38,plus,GTGTCAGGATGGGTCGGGGG NGG,NA,NA,,NA,NA,16 8 20 56,60,0,68.1828,NA,ENSG00000276016::ABR,7398,7421,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.120611612138257,0.4885323484,,-485,-462
+rs34186148,23,12,35,plus,GCTGTGTCAGGATGGGTCGG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,67.127,NA,ENSG00000159842::ABR,7402,7425,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.161035011700619,0.395316114,,-488,-465
+rs34186148,23,12,35,plus,GCTGTGTCAGGATGGGTCGG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,67.127,NA,ENSG00000278741::ABR,7401,7424,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.161035011700619,0.395316114,,-488,-465
+rs34186148,23,12,35,plus,GCTGTGTCAGGATGGGTCGG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,67.127,NA,ENSG00000276016::ABR,7401,7424,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.8,0.161035011700619,0.395316114,,-488,-465
+rs34186148,23,11,34,plus,GGCTGTGTCAGGATGGGTCG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,66.093,NA,ENSG00000278741::ABR,7402,7425,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.180778952897849,0.4238741632,,-489,-466
+rs34186148,23,11,34,plus,GGCTGTGTCAGGATGGGTCG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,66.093,NA,ENSG00000276016::ABR,7402,7425,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.180778952897849,0.4238741632,,-489,-466
+rs34186148,23,11,34,plus,GGCTGTGTCAGGATGGGTCG NGG,NA,NA,,NA,NA,8 12 24 56,60,0,66.093,NA,ENSG00000159842::ABR,7403,7426,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.180778952897849,0.4238741632,,-489,-466
+rs34186148,23,22,45,plus,GATGGGTCGGGGGTGGAACG NGG,NA,NA,,NA,NA,12 12 16 60,60,0,63.0873,NA,ENSG00000276016::ABR,7391,7414,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.454367036206098,0,,-478,-455
+rs34186148,23,22,45,plus,GATGGGTCGGGGGTGGAACG NGG,NA,NA,,NA,NA,12 12 16 60,60,0,63.0873,NA,ENSG00000159842::ABR,7392,7415,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.454367036206098,0,,-478,-455
+rs34186148,23,22,45,plus,GATGGGTCGGGGGTGGAACG NGG,NA,NA,,NA,NA,12 12 16 60,60,0,63.0873,NA,ENSG00000278741::ABR,7391,7414,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.454367036206098,0,,-478,-455
+rs34186148,23,5,28,plus,GGTGGGGGCTGTGTCAGGAT NGG,NA,NA,,NA,NA,8 12 24 56,60,0,62.071,NA,ENSG00000276016::ABR,7408,7431,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0.133499062355424,0.3700529976,,-495,-472
+rs34186148,23,5,28,plus,GGTGGGGGCTGTGTCAGGAT NGG,NA,NA,,NA,NA,8 12 24 56,60,0,62.071,NA,ENSG00000159842::ABR,7409,7432,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0.133499062355424,0.3700529976,,-495,-472
+rs34186148,23,5,28,plus,GGTGGGGGCTGTGTCAGGAT NGG,NA,NA,,NA,NA,8 12 24 56,60,0,62.071,NA,ENSG00000278741::ABR,7408,7431,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0.133499062355424,0.3700529976,,-495,-472
+rs34186148,23,9,32,plus,GGGGCTGTGTCAGGATGGGT NGG,NA,NA,,NA,NA,8 12 20 60,60,0,60.6316,NA,ENSG00000276016::ABR,7404,7427,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0303929115045477,0.3011871908,,-491,-468
+rs34186148,23,9,32,plus,GGGGCTGTGTCAGGATGGGT NGG,NA,NA,,NA,NA,8 12 20 60,60,0,60.6316,NA,ENSG00000159842::ABR,7405,7428,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0303929115045477,0.3011871908,,-491,-468
+rs34186148,23,9,32,plus,GGGGCTGTGTCAGGATGGGT NGG,NA,NA,,NA,NA,8 12 20 60,60,0,60.6316,NA,ENSG00000278741::ABR,7404,7427,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0303929115045477,0.3011871908,,-491,-468
+rs34186148,23,10,33,plus,GGGCTGTGTCAGGATGGGTC NGG,NA,NA,,NA,NA,8 12 20 60,60,0,56.5714,NA,ENSG00000159842::ABR,7404,7427,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0322471876105616,0.0963250804,,-490,-467
+rs34186148,23,10,33,plus,GGGCTGTGTCAGGATGGGTC NGG,NA,NA,,NA,NA,8 12 20 60,60,0,56.5714,NA,ENSG00000278741::ABR,7403,7426,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0322471876105616,0.0963250804,,-490,-467
+rs34186148,23,10,33,plus,GGGCTGTGTCAGGATGGGTC NGG,NA,NA,,NA,NA,8 12 20 60,60,0,56.5714,NA,ENSG00000276016::ABR,7403,7426,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0322471876105616,0.0963250804,,-490,-467
+rs34186148,23,21,44,plus,GGATGGGTCGGGGGTGGAAC NGG,NA,NA,,NA,NA,12 12 12 64,60,0,55.373,NA,ENSG00000159842::ABR,7393,7416,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0686507582518122,0,,-479,-456
+rs34186148,23,21,44,plus,GGATGGGTCGGGGGTGGAAC NGG,NA,NA,,NA,NA,12 12 12 64,60,0,55.373,NA,ENSG00000278741::ABR,7392,7415,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0686507582518122,0,,-479,-456
+rs34186148,23,21,44,plus,GGATGGGTCGGGGGTGGAAC NGG,NA,NA,,NA,NA,12 12 12 64,60,0,55.373,NA,ENSG00000276016::ABR,7392,7415,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0686507582518122,0,,-479,-456
+rs34186148,23,4,27,plus,GGGTGGGGGCTGTGTCAGGA NGG,NA,NA,,NA,NA,8 8 24 60,60,0,53.9999,NA,ENSG00000159842::ABR,7410,7433,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.5,0.0181943819756773,0.1818051352,,-496,-473
+rs34186148,23,4,27,plus,GGGTGGGGGCTGTGTCAGGA NGG,NA,NA,,NA,NA,8 8 24 60,60,0,53.9999,NA,ENSG00000278741::ABR,7409,7432,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.5,0.0181943819756773,0.1818051352,,-496,-473
+rs34186148,23,4,27,plus,GGGTGGGGGCTGTGTCAGGA NGG,NA,NA,,NA,NA,8 8 24 60,60,0,53.9999,NA,ENSG00000276016::ABR,7409,7432,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.5,0.0181943819756773,0.1818051352,,-496,-473
+rs34186148,23,0,23,plus,GAGTGGGTGGGGGCTGTGTC NGG,NA,NA,,NA,NA,12 8 24 56,60,0,51.8401,NA,ENSG00000159842::ABR,7414,7437,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0,-0.00799230199999998,,-500,-477
+rs34186148,23,0,23,plus,GAGTGGGTGGGGGCTGTGTC NGG,NA,NA,,NA,NA,12 8 24 56,60,0,51.8401,NA,ENSG00000278741::ABR,7413,7436,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0,-0.00799230199999998,,-500,-477
+rs34186148,23,0,23,plus,GAGTGGGTGGGGGCTGTGTC NGG,NA,NA,,NA,NA,12 8 24 56,60,0,51.8401,NA,ENSG00000276016::ABR,7413,7436,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.6,0,-0.00799230199999998,,-500,-477
+rs12917722,23,24,47,plus,GATGGTAATGTTGACCTCCT NGG,NA,NA,,NA,NA,20 20 28 32,100,0,52.739,NA,ENSG00000099364::FBXL19,14020,14043,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0369512796518701,0,,-476,-453
+rs9898399,23,19,42,plus,GGTCTTTGCAAGGCAAATGA NGG,NA,NA,,NA,NA,28 20 20 32,100,0,71.8796,NA,ENSG00000141252::VPS53,66409,66432,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.616659926791601,0.4773243496,,-481,-458
+rs9898399,23,9,32,plus,GGCACTACTGGGTCTTTGCA NGG,NA,NA,,NA,NA,20 24 24 32,100,0,53.0564,NA,ENSG00000141252::VPS53,66399,66422,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.166176321220749,0.0866468996,,-491,-468
+rs1141534,23,18,41,minus,GGGCCTCACCTTCCCCGCCA NGG,NA,NA,,NA,NA,16 28 8 48,100,0,51.3245,NA,ENSG00000064666::CNN2,6102,6125,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.9,0.325344840940726,0.3408817976,,-482,-459
+rs75161053,23,5,28,plus,GCTGACCTGCATTACACCCA NGG,NA,NA,,NA,NA,20 32 20 28,100,0,74.4758,NA,ENSG00000230666::CEACAM22P,7785,7808,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.770131108199283,0.353661906,,-495,-472
+rs75161053,23,21,44,minus,GCTGTGTGGGAGATCACCCT NGG,NA,NA,,NA,NA,20 40 16 24,100,0,64.6164,NA,ENSG00000230666::CEACAM22P,7801,7824,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.28815762254495,0.3426668376,,-479,-456
+rs75161053,23,10,33,minus,GATCACCCTGGGTGTAATGC NGG,NA,NA,,NA,NA,20 36 24 20,100,0,52.746,NA,ENSG00000230666::CEACAM22P,7790,7813,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0.0741742277563668,0.163129664,,-490,-467
+rs916888,23,9,32,minus,GGAGGAGCTGGGCTGCACCT NGG,NA,NA,,NA,NA,12 52 12 24,80,0,74.5292,NA,CHR_HSCHR17_2_CTG2,1207941,1207964,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.7,0.625470961961068,0.4009902464,,-491,-468
+rs916888,23,9,32,minus,GGAGGAGCTGGGCTGCACCT NGG,NA,NA,,NA,NA,12 52 12 24,80,0,74.5292,NA,17,1305162,1305185,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.7,0.625470961961068,0.4009902464,,-491,-468
+rs916888,23,20,43,minus,GGGCGAGGCGGGGAGGAGCT NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.962,NA,17,1305173,1305196,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0527420438789398,0.2453629084,,-480,-457
+rs916888,23,20,43,minus,GGGCGAGGCGGGGAGGAGCT NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.962,NA,CHR_HSCHR17_2_CTG2,1207952,1207975,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.0527420438789398,0.2453629084,,-480,-457
+rs916888,23,20,43,minus,GGGCGAGGCGGGGAGGAGCT NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.962,NA,ENSG00000107331::ABCA2,4993,5016,MMMMMMMMMMMMMMMMMXMMMMM,1,3,rc,0,0,0.7,0.0527420438789398,0.2453629084,,-480,-457
+rs916888,23,21,44,minus,GGGGCGAGGCGGGGAGGAGC NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.9028,NA,17,1305174,1305197,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.00166715711689214,0.2934736836,,-479,-456
+rs916888,23,21,44,minus,GGGGCGAGGCGGGGAGGAGC NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.9028,NA,CHR_HSCHR17_2_CTG2,1207953,1207976,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0.00166715711689214,0.2934736836,,-479,-456
+rs916888,23,21,44,minus,GGGGCGAGGCGGGGAGGAGC NGG,NA,NA,,NA,NA,4 68 16 12,64.3478,0,59.9028,NA,ENSG00000107331::ABCA2,4994,5017,MMMMMMMMMMMMMMMMXMMMMMM,1,3,rc,0,0,0.7,0.00166715711689214,0.2934736836,,-479,-456
+rs61572747,23,15,38,plus,GGAGGAGGGGAGCCTGAGGG NGG,NA,NA,,NA,NA,24 8 4 64,64.3478,0,67.2333,NA,CHR_HSCHR17_2_CTG5,45383515,45383538,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.7,0.118523425114837,0.5431436532,,-485,-462
+rs61572747,23,15,38,plus,GGAGGAGGGGAGCCTGAGGG NGG,NA,NA,,NA,NA,24 8 4 64,64.3478,0,67.2333,NA,17,45383515,45383538,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.7,0.118523425114837,0.5431436532,,-485,-462
+rs61572747,23,15,38,plus,GGAGGAGGGGAGCCTGAGGG NGG,NA,NA,,NA,NA,24 8 4 64,64.3478,0,67.2333,NA,CHR_HSCHR17_1_CTG5,45383517,45383540,MMMMMMMMMMXMMMMMMMMMMMM,1,3,fw,0,0,0.7,0.118523425114837,0.5431436532,,-485,-462
+rs61572747,23,12,35,plus,GGCGGAGGAGGGGAGCCTGA NGG,NA,NA,,NA,NA,20 12 4 64,64.3478,0,66.6414,NA,CHR_HSCHR17_2_CTG5,45383512,45383535,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.7,0.337427794534421,0.29464667,,-488,-465
+rs61572747,23,12,35,plus,GGCGGAGGAGGGGAGCCTGA NGG,NA,NA,,NA,NA,20 12 4 64,64.3478,0,66.6414,NA,17,45383512,45383535,MMMMMMMMMMMMMMMMMMMMMMM,0,3,fw,0,0,0.7,0.337427794534421,0.29464667,,-488,-465
+rs61572747,23,12,35,plus,GGCGGAGGAGGGGAGCCTGA NGG,NA,NA,,NA,NA,20 12 4 64,64.3478,0,66.6414,NA,CHR_HSCHR17_1_CTG5,45383514,45383537,MMMMMMMMMMMMMXMMMMMMMMM,1,3,fw,0,0,0.7,0.337427794534421,0.29464667,,-488,-465
+rs61572747,23,26,49,plus,GCCTGAGGGAGGAGCAGTTG NGG,NA,NA,,NA,NA,25 12 12 50,44.3478,0,50,NA,CHR_HSCHR17_1_CTG5,45383528,45383551,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0,0,,-474,-451
+rs61572747,23,26,49,plus,GCCTGAGGGAGGAGCAGTTG NGG,NA,NA,,NA,NA,25 12 12 50,44.3478,0,50,NA,CHR_HSCHR17_2_CTG5,45383526,45383549,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0,0,,-474,-451
+rs61572747,23,26,49,plus,GCCTGAGGGAGGAGCAGTTG NGG,NA,NA,,NA,NA,25 12 12 50,44.3478,0,50,NA,17,45383526,45383549,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0,0,,-474,-451
+rs61572747,23,26,49,plus,GCCTGAGGGAGGAGCAGTTG NGG,NA,NA,,NA,NA,25 12 12 50,44.3478,0,50,NA,ENSG00000149260::CAPN5,52549,52572,MMMMXMMMMMMMMMMMMMMMMMM,1,4,rc,0,0,0.5,0,0,,-474,-451
+rs203709,23,10,33,minus,GGTTACAAGGTTGGAGCCCC NGG,NA,NA,,NA,NA,24 40 16 20,100,0,58.5067,NA,ENSG00000073008::PVR,14485,14508,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.0529600304098145,0.072378826,,-490,-467
+rs203709,23,14,37,plus,GGGCTCCAACCTTGTAACCC NGG,NA,NA,,NA,NA,28 32 16 24,100,0,54.5211,NA,ENSG00000073008::PVR,14489,14512,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.054493509956644,0.1715615016,,-486,-463
+rs916888,23,7,30,plus,GCTGCAGGAGACGGTGGGAG NGG,NA,NA,,NA,NA,20 16 8 56,100,0,76.607,NA,ENSG00000132386::SERPINF1,9676,9699,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.573904765171749,0.4564458164,,-493,-470
+rs916888,23,16,39,plus,GACGGTGGGAGGGGCAGGGA NGG,NA,NA,,NA,NA,20 12 4 64,100,0,65.3728,NA,ENSG00000132386::SERPINF1,9685,9708,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.038616322302757,0.4300273404,,-484,-461
+rs916888,23,5,28,plus,GGGCTGCAGGAGACGGTGGG NGG,NA,NA,,NA,NA,16 12 8 64,100,0,62.7739,NA,ENSG00000132386::SERPINF1,9674,9697,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0893185553965849,0.3493805216,,-495,-472
+rs916888,23,6,29,plus,GGCTGCAGGAGACGGTGGGA NGG,NA,NA,,NA,NA,16 16 8 60,100,0,62.7472,NA,ENSG00000132386::SERPINF1,9675,9698,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0119884928149202,0.3253738944,,-494,-471
+rs3752231,23,8,31,plus,GGAGGATCAGAGGCACACGC NGG,NA,NA,,NA,NA,32 20 4 44,100,0,75.4082,NA,ENSG00000064687::ABCA7,3521,3544,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.596603503270651,0.4738087704,,-492,-469
+rs183427010,23,25,48,plus,GGGCTGCTCACTTTGAGTTC NGG,NA,NA,,NA,NA,16 20 28 36,100,0,48,NA,ENSG00000130202::PVRL2,17066,17089,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0,0,,-475,-452
+rs2965163,23,23,46,minus,GCACATGGAGTGTTCCGTGC NGG,NA,NA,,NA,NA,20 40 16 24,100,0,62.4828,NA,ENSG00000266903::CTB-171A8.1,65055,65078,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.227349452709533,0.1967925856,,-477,-454
+rs2965163,23,0,23,minus,GCCTGCCTCAGAGCACGTAC NGG,NA,NA,,NA,NA,16 36 16 32,100,0,52,NA,ENSG00000266903::CTB-171A8.1,65032,65055,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0,,-500,-477
+rs2965163,23,9,32,plus,GCTCTGAGGCAGGCCCGGCA NGG,NA,NA,,NA,NA,20 32 8 40,100,0,46.5615,NA,ENSG00000266903::CTB-171A8.1,65041,65064,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.9,0.132615434078859,0.2954599656,,-491,-468
+rs12978931,23,6,29,plus,GATCACTTCGGCCCCAGAGA NGG,NA,NA,,NA,NA,20 32 20 28,100,0,70.5747,NA,ENSG00000130202::PVRL2,14249,14272,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.456695814471521,0.3720424712,,-494,-471
+rs12978931,23,18,41,minus,GCTCACTGCAAACCGTCTCT NGG,NA,NA,,NA,NA,24 24 16 36,100,0,58.967,NA,ENSG00000130202::PVRL2,14261,14284,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.111989044464639,0.1363645676,,-482,-459
+rs150820726,23,17,40,plus,GCTGCCACATGCAGGGTGAA NGG,NA,NA,,NA,NA,28 20 16 36,100,0,53.559,NA,19,44723883,44723906,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.224981699200439,-0.0470277276,,-483,-460
+rs2965102,23,2,25,minus,GTTCCATCCTGTGCAAAGGG NGG,NA,NA,,NA,NA,20 36 24 20,100,0,52,NA,19,44732689,44732712,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-498,-475
+rs10419669,23,7,30,minus,GCCCCGAGGTAGGACACATC NGG,NA,NA,,NA,NA,12 36 24 28,100,0,50.6065,NA,ENSG00000142273::CBLC,16925,16948,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.00485333433251994,0.0254758456,,-493,-470
+rs2965162,23,25,48,minus,GTCCTGTCCTCTCTGGGCAG NGG,NA,NA,,NA,NA,32 36 4 28,100,0,65.4822,NA,ENSG00000266903::CTB-171A8.1,63467,63490,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0.4741106164,,-475,-452
+rs2965162,23,20,43,minus,GTCCTCTCTGGGCAGGGGTG NGG,NA,NA,,NA,NA,24 48 4 24,100,0,60.9587,NA,ENSG00000266903::CTB-171A8.1,63462,63485,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.0579875699226807,0.1899519944,,-480,-457
+rs2965162,23,3,26,minus,GTGGGGAGGCCTTGAGACTG NGG,NA,NA,,NA,NA,16 56 16 12,100,0,50.1192,NA,ENSG00000266903::CTB-171A8.1,63445,63468,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.00596123630669819,0,,-497,-474
+rs140414737,23,18,41,minus,GTTACCACCTCCCTTGGGAA NGG,NA,NA,,NA,NA,20 28 20 32,100,0,68.0076,NA,19,44770808,44770831,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.574529989976115,0.2258509304,,-482,-459
+rs140414737,23,7,30,plus,GCCGAGAAACTCCGTTCCCA NGG,NA,NA,,NA,NA,28 32 12 28,100,0,56.6444,NA,19,44770797,44770820,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0460901766388553,0.186130366,,-493,-470
+rs28399637,23,7,30,plus,GGGCAGTGGAGCACGCCCGT NGG,NA,NA,,NA,NA,16 28 8 48,100,0,67.3823,NA,ENSG00000187244::BCAM,11804,11827,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.122675273722466,0.446440726,,-493,-470
+rs28399637,23,23,46,minus,GAGAGGTCAGCCTGTGCCCA NGG,NA,NA,,NA,NA,16 40 16 28,100,0,59.8789,NA,ENSG00000187244::BCAM,11820,11843,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0827240776974709,0.2112253112,,-477,-454
+rs28399637,23,1,24,minus,GGCGTGCTCCACTGCCCAGC NGG,NA,NA,,NA,NA,12 36 12 40,100,0,54,NA,ENSG00000187244::BCAM,11798,11821,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0,,-499,-476
+rs2289495,23,15,38,minus,GGGAAGGGGTCCAGCAGCCG NGG,NA,NA,,NA,NA,8 48 20 24,100,0,66.2878,NA,ENSG00000186567::CEACAM19,21742,21765,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.148832267405377,0.4655592656,,-485,-462
+rs2289495,23,23,46,plus,GCTGGACCCCTTCCCTGTTC NGG,NA,NA,,NA,NA,12 40 24 24,100,0,53.3901,NA,ENSG00000186567::CEACAM19,21750,21773,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0695077133961883,0,,-477,-454
+rs2289495,23,2,25,minus,GCAGCCGTGGTCACCTTGCT NGG,NA,NA,,NA,NA,20 36 12 32,100,0,52,NA,ENSG00000186567::CEACAM19,21729,21752,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0,,-498,-475
+rs2289495,23,27,50,plus,GACCCCTTCCCTGTTCAGGC NGG,NA,NA,,NA,NA,13 39 21 26,100,0,52,NA,ENSG00000186567::CEACAM19,21754,21777,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-473,-450
+rs41289512,23,3,26,minus,GGCTCAGGGTCTGGTGGGTT NGG,NA,NA,,NA,NA,28 48 8 16,100,0,54.0819,NA,ENSG00000130202::PVRL2,2062,2085,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.00409968902467368,0,,-497,-474
+rs55840414,23,23,46,plus,GCGAACATAGCCAGGCGTCG NGG,NA,NA,,NA,NA,20 32 12 36,100,0,60.7739,NA,19,44840320,44840343,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.338699557603025,0,,-477,-454
+rs12459810,23,13,36,minus,GGGTGGAGGCGAGGTTTGGA NGG,NA,NA,,NA,NA,16 64 16 4,100,0,58.0166,NA,19,44746392,44746415,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.124041134305347,0.1767905056,,-487,-464
+rs2965169,23,8,31,plus,GATTGTGTCTCTGCACTCGT NGG,NA,NA,,NA,NA,8 20 36 36,100,0,62.5096,NA,ENSG00000069399::BCL3,188,211,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.283486908416462,0.2419934176,,-492,-469
+rs2965169,23,3,26,minus,GAGTGCAGAGACACAATCAG NGG,NA,NA,,NA,NA,12 32 36 20,100,0,60.7841,NA,ENSG00000069399::BCL3,193,216,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.639206009500925,0,,-497,-474
+rs1135062,23,15,38,minus,GTCACTCACCGGTGCCGAAG NGG,NA,NA,,NA,NA,16 32 20 32,100,0,56.8461,NA,ENSG00000187244::BCAM,10418,10441,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0516647919005332,0.1906429232,,-485,-462
+rs1135062,23,23,46,plus,GCACCGGTGAGTGACTGAGG NGG,NA,NA,,NA,NA,16 16 20 48,100,0,56.7261,NA,ENSG00000187244::BCAM,10426,10449,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.236306386386413,0,,-477,-454
+rs10401176,23,26,49,plus,GTCTGTGTGATGGGTTGGTA NGG,NA,NA,,NA,NA,12 4 37 45,100,0,50,NA,ENSG00000069399::BCL3,2530,2553,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-474,-451
+rs2965109,23,20,43,minus,GCGAGGGACAAGAAGAGTCA NGG,NA,NA,,NA,NA,4 44 40 12,100,0,61.9494,NA,19,44722063,44722086,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.241349304195245,0.3561231504,,-480,-457
+rs7255063,23,12,35,plus,GTCAGAGACACGTGTAGGAA NGG,NA,NA,,NA,NA,36 12 16 36,100,0,53.2704,NA,ENSG00000130202::PVRL2,2974,2997,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.0485818419852448,0.2149428724,,-488,-465
+rs111780744,23,5,28,minus,GCGTCTTGCTTCCATGCCTC NGG,NA,NA,,NA,NA,36 24 8 32,100,0,54.5488,NA,ENSG00000186567::CEACAM19,1386,1409,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.127442592296763,0,,-495,-472
+rs111780744,23,26,49,plus,GCTAAATGAAGAGGGCCATA NGG,NA,NA,,NA,NA,37 12 12 37,100,0,52,NA,ENSG00000186567::CEACAM19,1407,1430,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-474,-451
+rs140824606,23,23,46,plus,GCGCCCACTGCATTCCCGGC NGG,NA,NA,,NA,NA,8 44 16 32,100,0,56.6893,NA,19,44807825,44807848,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.134466498071594,0,,-477,-454
+rs140824606,23,19,42,plus,GATTGCGCCCACTGCATTCC NGG,NA,NA,,NA,NA,12 40 24 24,100,0,53.9505,NA,19,44807821,44807844,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0335787182090226,0.0639472336,,-481,-458
+rs72654437,23,25,48,plus,GGGTCTGGGAAGCAGACATC NGG,NA,NA,,NA,NA,20 16 20 44,100,0,50,NA,ENSG00000280087::CTB-129P6.7,3467,3490,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-475,-452
+rs72654437,23,26,49,plus,GGTCTGGGAAGCAGACATCT NGG,NA,NA,,NA,NA,20 16 20 41,84.3478,0,50,NA,ENSG00000280087::CTB-129P6.7,3468,3491,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.5,0,0,,-474,-451
+rs72654437,23,26,49,plus,GGTCTGGGAAGCAGACATCT NGG,NA,NA,,NA,NA,20 16 20 41,84.3478,0,50,NA,10,29963898,29963921,MMMMMMMMMMMMMMMMMMMXMMM,1,2,rc,0,0,0.5,0,0,,-474,-451
+rs72654437,23,3,26,plus,GCATTGTTATGCTATTCTTG NGG,NA,NA,,NA,NA,12 12 44 32,84.3478,0,48.4155,NA,ENSG00000280087::CTB-129P6.7,3445,3468,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.3,0,0.1207762136,,-497,-474
+rs72654437,23,3,26,plus,GCATTGTTATGCTATTCTTG NGG,NA,NA,,NA,NA,12 12 44 32,84.3478,0,48.4155,NA,19,44925375,44925398,MMMMMMMMMMXMMMMMMMMMMMM,1,2,fw,0,0,0.3,0,0.1207762136,,-497,-474
+rs76692773,23,16,39,plus,GGGCGATGCCTCAGCGGGCG NGG,NA,NA,,NA,NA,12 28 12 48,100,0,63.2242,NA,ENSG00000130204::TOMM40,376,399,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.120495414569638,0.2407153848,,-484,-461
+rs76692773,23,10,33,plus,GAGGCGGGGCGATGCCTCAG NGG,NA,NA,,NA,NA,12 28 8 52,100,0,60.6021,NA,ENSG00000130204::TOMM40,370,393,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0239737067534347,0.30613464,,-490,-467
+rs76692773,23,2,25,minus,GCATCGCCCCGCCTCTCTCC NGG,NA,NA,,NA,NA,20 24 8 48,100,0,52,NA,ENSG00000130204::TOMM40,362,385,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0,,-498,-475
+rs117264457,23,0,23,minus,GTGGCCCCACCTGGACTTCC NGG,NA,NA,,NA,NA,16 28 20 36,100,0,52,NA,ENSG00000130204::TOMM40,10581,10604,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0,,-500,-477
+rs12691088,23,6,29,plus,GAAAGTGGGTAAGCTGGGTG NGG,NA,NA,,NA,NA,20 4 16 60,100,0,62.9743,NA,ENSG00000130208::APOC1,963,986,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0196769851510562,0.3290400156,,-494,-471
+rs12691088,23,14,37,plus,GTAAGCTGGGTGGGGGGCTC NGG,NA,NA,,NA,NA,12 12 20 56,100,0,55.1637,NA,ENSG00000130208::APOC1,971,994,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.00729752558839351,-0.0491092196,,-486,-463
+rs12691088,23,1,24,plus,GCCTTGAAAGTGGGTAAGCT NGG,NA,NA,,NA,NA,20 12 24 44,100,0,52.2525,NA,ENSG00000130208::APOC1,958,981,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0.0126291632,,-499,-476
+rs117664574,23,7,30,minus,GGTCGAGTGGATGTTGGAGG NGG,NA,NA,,NA,NA,24 60 12 4,100,0,71.5306,NA,19,44924504,44924527,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.3835046273265,0.593028538,,-493,-470
+rs117664574,23,1,24,minus,GTGGATGTTGGAGGTGGCAT NGG,NA,NA,,NA,NA,24 56 16 4,100,0,54,NA,19,44924498,44924521,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0,,-499,-476
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000183889::NPIPA5,8952,8975,MMMMMMMMMMMMMMMMMMXMMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000282522::PKD1P1,16266,16289,MMMMMMMMMMMMMMMMMMXMMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000183458::RP11-958N24.1,16194,16217,MMMMMMMMMMMMMMMMMMXMMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,2,49304391,49304414,MMMMMMXMMMMMMMMMMMMMMMM,1,9,fw,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000205746::RP11-1212A22.1,7849,7872,MMMMXMMMMMMMMMMMMMMMMMM,1,9,fw,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,19,44905373,44905396,MMMMMMMMMMMMMMMMMMMMMMM,0,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000186827::TNFRSF4,1272,1295,MMMMMMMMMMMMMMMMMMMXMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,ENSG00000196364::PRSS29P,2488,2511,MMMMMMMMMMMMMMMMXMMMMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs769446,23,27,50,minus,GGGATGGGAGGGGCTGGGGG NGG,NA,NA,,NA,NA,8 73 8 8,0,0,49.233,NA,20,45925428,45925451,MMMMMMMMMMMMMMMXMMMMMMM,1,9,rc,0,0,0.9,0,0.5616535668,,-473,-450
+rs73050293,23,2,25,minus,GAAGGCACGTGTCTTTGTAA NGG,NA,NA,,NA,NA,32 32 20 16,100,0,46,NA,ENSG00000130202::PVRL2,30291,30314,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.3,0,0,,-498,-475
+rs7412,23,26,49,plus,GCCTGGCAGTGTACCAGGCC NGG,NA,NA,,NA,NA,12 29 12 45,100,0,56,NA,ENSG00000130203::APOE,3069,3092,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0,0,,-474,-451
+rs7412,23,21,44,plus,GAAGCGCCTGGCAGTGTACC NGG,NA,NA,,NA,NA,20 32 12 36,100,0,51.4212,NA,ENSG00000130203::APOE,3064,3087,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0710609198323978,0,,-479,-456
+rs7254133,23,8,31,plus,GTAAATTTAGCAGGACGCGG NGG,NA,NA,,NA,NA,24 16 24 36,100,0,84.9903,NA,19,44935280,44935303,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.842914339351525,0.6066043932,,-492,-469
+rs10119,23,25,48,plus,GGAATCCCTCCCGGGACCCC NGG,NA,NA,,NA,NA,16 48 8 28,100,0,56,NA,ENSG00000130204::TOMM40,12824,12847,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-475,-452
+rs10119,23,14,37,minus,GGGAGGGATTCCGGAATTGA NGG,NA,NA,,NA,NA,16 48 20 16,53.0434,0,58.0463,NA,ENSG00000130204::TOMM40,12835,12858,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.155256782381904,0.247061596,,-486,-463
+rs10119,23,14,37,minus,GGGAGGGATTCCGGAATTGA NGG,NA,NA,,NA,NA,16 48 20 16,53.0434,0,58.0463,NA,14,19268397,19268420,XMMMMMMMMMMMMMMMMMMMMMM,1,4,fw,0,0,0.5,0.155256782381904,0.247061596,,-486,-463
+rs10119,23,14,37,minus,GGGAGGGATTCCGGAATTGA NGG,NA,NA,,NA,NA,16 48 20 16,53.0434,0,58.0463,NA,ENSG00000277128::RP11-146E13.4,3850,3873,MMMMMMMMMMMMMMMMMMMMMMX,1,4,rc,0,0,0.5,0.155256782381904,0.247061596,,-486,-463
+rs10119,23,14,37,minus,GGGAGGGATTCCGGAATTGA NGG,NA,NA,,NA,NA,16 48 20 16,53.0434,0,58.0463,NA,ENSG00000223875::NBEAP3,949,972,MMMMMMMMMMMMMMMMMMMMMMX,1,4,rc,0,0,0.5,0.155256782381904,0.247061596,,-486,-463
+rs10119,23,13,36,minus,GGAGGGATTCCGGAATTGAG NGG,NA,NA,,NA,NA,16 52 20 12,40,0,71.2455,NA,ENSG00000130204::TOMM40,12836,12859,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.60632383179415,0.455951832,,-487,-464
+rs10119,23,13,36,minus,GGAGGGATTCCGGAATTGAG NGG,NA,NA,,NA,NA,16 52 20 12,40,0,71.2455,NA,14,19268398,19268421,MMMMMMMMMMMMMMMMMMMMMMM,0,4,fw,0,0,0.5,0.60632383179415,0.455951832,,-487,-464
+rs10119,23,13,36,minus,GGAGGGATTCCGGAATTGAG NGG,NA,NA,,NA,NA,16 52 20 12,40,0,71.2455,NA,ENSG00000277128::RP11-146E13.4,3849,3872,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.5,0.60632383179415,0.455951832,,-487,-464
+rs10119,23,13,36,minus,GGAGGGATTCCGGAATTGAG NGG,NA,NA,,NA,NA,16 52 20 12,40,0,71.2455,NA,ENSG00000223875::NBEAP3,948,971,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.5,0.60632383179415,0.455951832,,-487,-464
+rs71352236,23,12,35,plus,GTACGCTGTGAGTGTATCGG NGG,NA,NA,,NA,NA,12 12 28 48,100,0,75.6402,NA,ENSG00000130202::PVRL2,25968,25991,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.812224256363198,0.3697880072,,-488,-465
+rs8102895,23,15,38,plus,GGCTGGGAGAAAGACGAGTA NGG,NA,NA,,NA,NA,28 12 12 48,100,0,60.4729,NA,ENSG00000104853::CLPTM1,611,634,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.185783960442831,0.2378623628,,-485,-462
+rs8102895,23,23,46,plus,GAAAGACGAGTACGGTGGCC NGG,NA,NA,,NA,NA,28 16 16 40,100,0,57.9924,NA,ENSG00000104853::CLPTM1,619,642,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0996200468024708,0,,-477,-454
+rs8102895,23,27,50,plus,GACGAGTACGGTGGCCAGGT NGG,NA,NA,,NA,NA,17 17 17 47,100,0,54,NA,ENSG00000104853::CLPTM1,623,646,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0,,-473,-450
+rs59007384,23,11,34,plus,GAGGCCCAGACAGGGTTGGG NGG,NA,NA,,NA,NA,20 20 8 52,100,0,65.5899,NA,ENSG00000130204::TOMM40,2825,2848,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.147055671758137,0.3324435696,,-489,-466
+rs59007384,23,10,33,plus,GGAGGCCCAGACAGGGTTGG NGG,NA,NA,,NA,NA,20 16 8 56,84.3478,0,61.0808,NA,ENSG00000130204::TOMM40,2824,2847,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.165670207694591,0.188372592,,-490,-467
+rs59007384,23,10,33,plus,GGAGGCCCAGACAGGGTTGG NGG,NA,NA,,NA,NA,20 16 8 56,84.3478,0,61.0808,NA,ENSG00000163785::RYK,175777,175800,MMMXMMMMMMMMMMMMMMMMMMM,1,2,fw,0,0,0.7,0.165670207694591,0.188372592,,-490,-467
+rs283813,23,9,32,plus,GGGGTAGGAGGTAGGACAAG NGG,NA,NA,,NA,NA,28 4 12 56,84.3478,0,59.3822,NA,ENSG00000267282::CTB-129P6.4,3883,3906,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0.197085894630424,0.2720279688,,-491,-468
+rs283813,23,9,32,plus,GGGGTAGGAGGTAGGACAAG NGG,NA,NA,,NA,NA,28 4 12 56,84.3478,0,59.3822,NA,ENSG00000153283::CD96,278341,278364,MMMMMMMMMMMMMMMXMMMMMMM,1,2,fw,0,0,0.5,0.197085894630424,0.2720279688,,-491,-468
+rs35568738,23,7,30,minus,GGTACTAAGGGGGTGGACGT NGG,NA,NA,,NA,NA,16 52 20 12,100,0,64.3544,NA,ENSG00000130204::TOMM40,8874,8897,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.187503773552427,0.3302176748,,-493,-470
+rs144261139,23,7,30,plus,GAAAGAATGTCCCCTGCCCA NGG,NA,NA,,NA,NA,28 28 16 28,100,0,61.5373,NA,ENSG00000267282::CTB-129P6.4,54,77,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.1161495278472,0.2607194176,,-493,-470
+rs1038026,23,14,37,plus,GTAGGTAGAGCAGCCAGGCG NGG,NA,NA,,NA,NA,20 16 16 48,100,0,75.6085,NA,ENSG00000130204::TOMM40,11225,11248,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.499625532320013,0.4807996004,,-486,-463
+rs41290100,23,24,47,plus,GCGTTCCAGGAATGGAAAGG NGG,NA,NA,,NA,NA,24 16 16 44,100,0,61.0841,NA,ENSG00000130202::PVRL2,21508,21531,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.454208268449474,0,,-476,-453
+rs41290100,23,0,23,plus,GTGGGCATGAGATGGGAGCT NGG,NA,NA,,NA,NA,16 12 16 56,100,0,58.9548,NA,ENSG00000130202::PVRL2,21484,21507,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0.247740796,,-500,-477
+rs41290100,23,22,45,plus,GCGCGTTCCAGGAATGGAAA NGG,NA,NA,,NA,NA,24 16 12 48,100,0,57.3297,NA,ENSG00000130202::PVRL2,21506,21529,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.466486137897164,0,,-478,-455
+rs41290100,23,21,44,plus,GGCGCGTTCCAGGAATGGAA NGG,NA,NA,,NA,NA,24 16 12 48,100,0,50.0718,NA,ENSG00000130202::PVRL2,21505,21528,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.103592009166061,0,,-479,-456
+rs41290120,23,13,36,plus,GCTGGGGGTCTCGGGAGGGG NGG,NA,NA,,NA,NA,8 16 12 64,100,0,67.4353,NA,ENSG00000130202::PVRL2,33231,33254,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.059592139697189,0.512176746,,-487,-464
+rs41290120,23,10,33,plus,GTTGCTGGGGGTCTCGGGAG NGG,NA,NA,,NA,NA,8 12 20 60,100,0,66.0892,NA,ENSG00000130202::PVRL2,33228,33251,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0254808217221259,0.4789801004,,-490,-467
+rs41290120,23,9,32,plus,GGTTGCTGGGGGTCTCGGGA NGG,NA,NA,,NA,NA,8 12 20 60,100,0,64.2822,NA,ENSG00000130202::PVRL2,33227,33250,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.174996810982881,0.3391151832,,-491,-468
+rs73558179,23,7,30,plus,GGCAGACTTGGGAGGTGATG NGG,NA,NA,,NA,NA,16 8 20 56,100,0,56.2166,NA,ENSG00000104853::CLPTM1,18644,18667,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.049142763599777,0.1616892096,,-493,-470
+rs73558179,23,6,29,plus,GGGCAGACTTGGGAGGTGAT NGG,NA,NA,,NA,NA,16 8 20 56,100,0,52.6145,NA,ENSG00000104853::CLPTM1,18643,18666,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0551890446047648,-0.0244619884,,-494,-471
+rs41290102,23,11,34,plus,GAAGGGAGCTGGGACGAGAG NGG,NA,NA,,NA,NA,28 8 4 60,100,0,64.889,NA,ENSG00000130202::PVRL2,21742,21765,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.101787437325652,0.4426643224,,-489,-466
+rs41290102,23,0,23,plus,GGACGGAGGTAGAAGGGAGC NGG,NA,NA,,NA,NA,28 8 8 56,100,0,58.144,NA,ENSG00000130202::PVRL2,21731,21754,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0.3072040508,,-500,-477
+rs41290102,23,1,24,plus,GACGGAGGTAGAAGGGAGCT NGG,NA,NA,,NA,NA,28 12 8 52,100,0,57.2701,NA,ENSG00000130202::PVRL2,21732,21755,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0.16350841,,-499,-476
+rs72654445,23,16,39,plus,GGGAAGATGGCCACAGGGAC NGG,NA,NA,,NA,NA,32 20 4 44,80,0,59.3592,NA,19,44926490,44926513,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.0436017719195277,0.3243596624,,-484,-461
+rs72654445,23,16,39,plus,GGGAAGATGGCCACAGGGAC NGG,NA,NA,,NA,NA,32 20 4 44,80,0,59.3592,NA,ENSG00000280087::CTB-129P6.7,4559,4582,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.0436017719195277,0.3243596624,,-484,-461
+rs72654445,23,3,26,plus,GGGAGACCCCTGAGGGAAGA NGG,NA,NA,,NA,NA,24 24 8 44,80,0,53.6053,NA,19,44926477,44926500,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.5,0,0.1802678392,,-497,-474
+rs72654445,23,3,26,plus,GGGAGACCCCTGAGGGAAGA NGG,NA,NA,,NA,NA,24 24 8 44,80,0,53.6053,NA,ENSG00000280087::CTB-129P6.7,4546,4569,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.5,0,0.1802678392,,-497,-474
+rs11673139,23,5,28,minus,GGTCCCACGACAGCCTTGTG NGG,NA,NA,,NA,NA,20 36 16 28,100,0,57.0011,NA,ENSG00000130202::PVRL2,33585,33608,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.250055839531953,0,,-495,-472
+rs11673139,23,13,36,plus,GGCTGTCGTGGGACCCAGTA NGG,NA,NA,,NA,NA,20 24 16 40,100,0,51.0775,NA,ENSG00000130202::PVRL2,33593,33616,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0373656914601028,0.0165111344,,-487,-464
+rs429358,23,7,30,plus,GCGGACATGGAGGACGTGTG NGG,NA,NA,,NA,NA,16 24 12 48,100,0,63.5671,NA,ENSG00000130203::APOE,2912,2935,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.270722348175749,0.2076340748,,-493,-470
+rs429358,23,15,38,plus,GGAGGACGTGTGCGGCCGCC NGG,NA,NA,,NA,NA,8 24 16 52,100,0,42.6519,NA,ENSG00000130203::APOE,2920,2943,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.9,0.237845395010549,-0.0052501404,,-485,-462
+rs60049679,23,6,29,plus,GACACGGTGTGAATGAGGGG NGG,NA,NA,,NA,NA,24 8 16 52,80,0,78.6817,NA,ENSG00000280087::CTB-129P6.7,4501,4524,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.607949643417523,0.6261378268,,-494,-471
+rs60049679,23,6,29,plus,GACACGGTGTGAATGAGGGG NGG,NA,NA,,NA,NA,24 8 16 52,80,0,78.6817,NA,19,44926432,44926455,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.607949643417523,0.6261378268,,-494,-471
+rs60049679,23,5,28,plus,GGACACGGTGTGAATGAGGG NGG,NA,NA,,NA,NA,24 8 12 56,80,0,67.5895,NA,19,44926431,44926454,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.367376186176946,0.4121037588,,-495,-472
+rs60049679,23,5,28,plus,GGACACGGTGTGAATGAGGG NGG,NA,NA,,NA,NA,24 8 12 56,80,0,67.5895,NA,ENSG00000280087::CTB-129P6.7,4500,4523,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.367376186176946,0.4121037588,,-495,-472
+rs60049679,23,4,27,plus,GGGACACGGTGTGAATGAGG NGG,NA,NA,,NA,NA,20 8 12 60,80,0,63.3013,NA,19,44926430,44926453,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.0509610871205505,0.5141049936,,-496,-473
+rs60049679,23,4,27,plus,GGGACACGGTGTGAATGAGG NGG,NA,NA,,NA,NA,20 8 12 60,80,0,63.3013,NA,ENSG00000280087::CTB-129P6.7,4499,4522,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.6,0.0509610871205505,0.5141049936,,-496,-473
+rs60049679,23,20,43,plus,GAGGGGGGGATGAGATCACA NGG,NA,NA,,NA,NA,24 8 16 52,80,0,58.4212,NA,19,44926446,44926469,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.5,0.154067625393504,0.2669952992,,-480,-457
+rs60049679,23,20,43,plus,GAGGGGGGGATGAGATCACA NGG,NA,NA,,NA,NA,24 8 16 52,80,0,58.4212,NA,ENSG00000280087::CTB-129P6.7,4515,4538,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.5,0.154067625393504,0.2669952992,,-480,-457
+rs1064725,23,18,41,plus,GACTCCCTCCATGTGGCCCC NGG,NA,NA,,NA,NA,12 40 20 28,100,0,61.9129,NA,ENSG00000130208::APOC1,5050,5073,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.055828675566413,0.2398211268,,-482,-459
+rs1064725,23,0,23,minus,GAGTCCTCAGCACAGGCGCT NGG,NA,NA,,NA,NA,12 44 16 28,100,0,56,NA,ENSG00000130208::APOC1,5032,5055,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-500,-477
+rs1064725,23,22,45,minus,GGCACCTGGGGCCACATGGA NGG,NA,NA,,NA,NA,12 48 16 24,100,0,55.861,NA,ENSG00000130208::APOC1,5054,5077,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0595668351956824,0.1334880716,,-478,-455
+rs1064725,23,1,24,minus,GGAGTCCTCAGCACAGGCGC NGG,NA,NA,,NA,NA,12 40 20 28,100,0,54,NA,ENSG00000130208::APOC1,5033,5056,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0,,-499,-476
+rs59325138,23,5,28,plus,GCCAGGCTGACACGTGGTTG NGG,NA,NA,,NA,NA,12 24 16 48,80,0,61.4057,NA,ENSG00000280087::CTB-129P6.7,3639,3662,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.137433959676293,0.2328554292,,-495,-472
+rs59325138,23,5,28,plus,GCCAGGCTGACACGTGGTTG NGG,NA,NA,,NA,NA,12 24 16 48,80,0,61.4057,NA,19,44925569,44925592,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.137433959676293,0.2328554292,,-495,-472
+rs11668861,23,22,45,plus,GAGGACCCCACAGCACATTC NGG,NA,NA,,NA,NA,32 32 8 28,100,0,50.8492,NA,ENSG00000130202::PVRL2,31535,31558,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0424619959597043,0,,-478,-455
+rs12983572,23,11,34,minus,GTGAGTGACTTACCTCTCTG NGG,NA,NA,,NA,NA,28 32 20 20,100,0,59.2395,NA,ENSG00000267114::CTB-129P6.11,3517,3540,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.155159575512497,0.2068162796,,-489,-466
+rs62118471,23,8,31,minus,GCATCAGTGGGGGTCCTGGA NGG,NA,NA,,NA,NA,16 52 16 16,100,0,60.4005,NA,ENSG00000266958::AC006126.3,386,409,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.201678292496611,0.2183468192,,-492,-469
+rs111243475,23,21,44,minus,GTGTAATTGACCAGTTGCGG NGG,NA,NA,,NA,NA,28 44 16 12,100,0,70.5925,NA,ENSG00000266958::AC006126.3,920,943,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.398586234937099,0.531039886,,-479,-456
+rs139995984,23,27,50,minus,GGGCCCATGTGGGACATGCT NGG,NA,NA,,NA,NA,17 47 13 21,100,0,53.9024,NA,19,45071226,45071249,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0.0951218628,,-473,-450
+rs112481437,23,3,26,plus,GGAGTTTGGATCCAGGTGGA NGG,NA,NA,,NA,NA,20 8 24 48,100,0,56.8621,NA,ENSG00000104859::CLASRP,6815,6838,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0.1431064924,,-497,-474
+rs112481437,23,23,46,plus,GGGATGGTGCAGAGGAAGGA NGG,NA,NA,,NA,NA,28 8 12 52,100,0,55.3739,NA,ENSG00000104859::CLASRP,6835,6858,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.26869762503619,0,,-477,-454
+rs149553138,23,7,30,minus,GGGGCGGATCTGGACCCAGG NGG,NA,NA,,NA,NA,12 48 12 28,100,0,72.5747,NA,ENSG00000007255::TRAPPC6A,6274,6297,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.354596011910868,0.4741405396,,-493,-470
+rs149553138,23,10,33,minus,GCTGGGGCGGATCTGGACCC NGG,NA,NA,,NA,NA,16 48 12 24,100,0,67.6661,NA,ENSG00000007255::TRAPPC6A,6277,6300,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.238196720134658,0.4451120704,,-490,-467
+rs149553138,23,4,27,minus,GCGGATCTGGACCCAGGCGG NGG,NA,NA,,NA,NA,12 52 12 24,100,0,62.998,NA,ENSG00000007255::TRAPPC6A,6271,6294,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.349904478177799,0,,-496,-473
+rs149553138,23,17,40,minus,GGTAAGTGCTGGGGCGGATC NGG,NA,NA,,NA,NA,24 48 12 16,100,0,53.2616,NA,ENSG00000007255::TRAPPC6A,6284,6307,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0166857737734307,-0.053604866,,-483,-460
+rs149553138,23,25,48,plus,GCCCCAGCACTTACCAGTGT NGG,NA,NA,,NA,NA,20 36 16 28,100,0,52,NA,ENSG00000007255::TRAPPC6A,6292,6315,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0,,-475,-452
+rs149553138,23,27,50,minus,GTCCCACACTGGTAAGTGCT NGG,NA,NA,,NA,NA,21 34 17 26,100,0,50.1443,NA,ENSG00000007255::TRAPPC6A,6294,6317,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0,0.00721850159999999,,-473,-450
+rs346751,23,19,42,plus,GTAGCATTGACTGATTTCTG NGG,NA,NA,,NA,NA,16 16 40 28,100,0,61.1048,NA,ENSG00000130201::EXOC3L2,18548,18571,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.415216323067157,0.240025364,,-481,-458
+rs4803791,23,8,31,minus,GATCACTTAAGCCTGAGACG NGG,NA,NA,,NA,NA,20 32 28 20,53.0434,0,76.3015,NA,ENSG00000267618::RAD51L3-RFFL,16897,16920,MMMMMMMMMMMMMMMMMMXMMMM,1,4,fw,0,0,0.6,0.81647293882503,0.3986045196,,-492,-469
+rs4803791,23,8,31,minus,GATCACTTAAGCCTGAGACG NGG,NA,NA,,NA,NA,20 32 28 20,53.0434,0,76.3015,NA,ENSG00000104856::RELB,18878,18901,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.6,0.81647293882503,0.3986045196,,-492,-469
+rs4803791,23,8,31,minus,GATCACTTAAGCCTGAGACG NGG,NA,NA,,NA,NA,20 32 28 20,53.0434,0,76.3015,NA,12,121236755,121236778,MMMMMMMMMMMMMMMMMMXMMMM,1,4,fw,0,0,0.6,0.81647293882503,0.3986045196,,-492,-469
+rs4803791,23,8,31,minus,GATCACTTAAGCCTGAGACG NGG,NA,NA,,NA,NA,20 32 28 20,53.0434,0,76.3015,NA,ENSG00000156234::CXCL13,15790,15813,MMMMMMMMMMMMMMMMMMXMMMM,1,4,fw,0,0,0.6,0.81647293882503,0.3986045196,,-492,-469
+rs185181700,23,10,33,minus,GGCAAGTCCTGGTGCCTTGC NGG,NA,NA,,NA,NA,28 40 8 24,37.3913,0,49.6284,NA,ENSG00000266958::AC006126.3,15814,15837,MMMMMMMMMMMMMMMMMMMMMMM,0,5,rc,0,0,0.6,0.00564322378922244,-0.1242228812,,-490,-467
+rs185181700,23,10,33,minus,GGCAAGTCCTGGTGCCTTGC NGG,NA,NA,,NA,NA,28 40 8 24,37.3913,0,49.6284,NA,13,46934495,46934518,MMMMMMMMMMMMMMMXMMMMMMM,1,5,fw,0,0,0.6,0.00564322378922244,-0.1242228812,,-490,-467
+rs185181700,23,10,33,minus,GGCAAGTCCTGGTGCCTTGC NGG,NA,NA,,NA,NA,28 40 8 24,37.3913,0,49.6284,NA,ENSG00000125631::HTR5BP,19612,19635,MMMMMMMXMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0.00564322378922244,-0.1242228812,,-490,-467
+rs185181700,23,10,33,minus,GGCAAGTCCTGGTGCCTTGC NGG,NA,NA,,NA,NA,28 40 8 24,37.3913,0,49.6284,NA,12,20175004,20175027,MMMMMMXMMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0.00564322378922244,-0.1242228812,,-490,-467
+rs185181700,23,10,33,minus,GGCAAGTCCTGGTGCCTTGC NGG,NA,NA,,NA,NA,28 40 8 24,37.3913,0,49.6284,NA,ENSG00000182348::ZNF804B,421877,421900,MMMMMMXMMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0.00564322378922244,-0.1242228812,,-490,-467
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,X,151191315,151191338,MMMMMMMMMMMMMMMXMMMMMMM,1,8,fw,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,ENSG00000113100::CDH9,38915,38938,XMMMMMMMMMMMMMMMMMMMMMM,1,8,fw,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,ENSG00000266958::AC006126.3,15813,15836,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,13,46934496,46934519,MMMMMMMMMMMMMMXMMMMMMMM,1,8,fw,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,13,57199644,57199667,MMMMMMMMXMMMMMMMMMMMMMM,1,8,rc,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,ENSG00000225087::RP4-660H19.1,59597,59620,MMMMMMMMXMMMMMMMMMMMMMM,1,8,rc,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,ENSG00000182348::ZNF804B,421876,421899,MMMMMMMXMMMMMMMMMMMMMMM,1,8,rc,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs185181700,23,9,32,minus,GCAAGTCCTGGTGCCTTGCT NGG,NA,NA,,NA,NA,24 44 8 24,0,0,59.3514,NA,12,20175003,20175026,MMMMMMMXMMMMMMMMMMMMMMM,1,8,rc,0,0,0.7,0.195042506038173,0.0725309132,,-491,-468
+rs117612135,23,25,48,minus,GGAGGCTGGGCGCTCAGGAG NGG,NA,NA,,NA,NA,8 60 16 16,100,0,63.9641,NA,19,45001269,45001292,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0.4982062444,,-475,-452
+rs117612135,23,21,44,minus,GCTGGGCGCTCAGGAGGGGT NGG,NA,NA,,NA,NA,16 56 12 16,100,0,61.3161,NA,19,45001265,45001288,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0441310213881486,0.3216750972,,-479,-456
+rs117612135,23,26,49,minus,GGGAGGCTGGGCGCTCAGGA NGG,NA,NA,,NA,NA,8 58 16 16,100,0,61.2947,NA,19,45001270,45001293,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0.3647365512,,-474,-451
+rs117612135,23,16,39,minus,GCGCTCAGGAGGGGTTGGGC NGG,NA,NA,,NA,NA,12 60 12 16,100,0,60.8095,NA,19,45001260,45001283,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0146369722463026,0.325839856,,-484,-461
+rs147188206,23,9,32,minus,GCACCCAGCTCCCTCTGCCC NGG,NA,NA,,NA,NA,16 24 8 52,100,0,60.8578,NA,ENSG00000104859::CLASRP,10273,10296,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.0891059312977826,0.2537853348,,-491,-468
+rs147188206,23,6,29,plus,GTCCCAGGGCAGAGGGAGCT NGG,NA,NA,,NA,NA,16 20 12 52,100,0,54.7783,NA,ENSG00000104859::CLASRP,10270,10293,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0135083225274057,0.0254073312,,-494,-471
+rs76971643,23,25,48,plus,GTCTGTGTCCCCACTCGCTA NGG,NA,NA,,NA,NA,12 36 24 28,100,0,50,NA,ENSG00000007255::TRAPPC6A,6936,6959,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-475,-452
+rs146723120,23,9,32,minus,GCCCGAGGCGCAGCACGCTG NGG,NA,NA,,NA,NA,4 40 16 40,100,0,76.5443,NA,ENSG00000104866::PPP1R37,53550,53573,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.534087858336653,0.4931317484,,-491,-468
+rs146723120,23,24,47,minus,GCTTGGTGGAGGCCAGCCCG NGG,NA,NA,,NA,NA,12 48 16 24,100,0,69.6163,NA,ENSG00000104866::PPP1R37,53565,53588,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0.6808173244,,-476,-453
+rs76856627,23,23,46,plus,GCATACTGTGTCGTTTGGTG NGG,NA,NA,,NA,NA,8 20 36 36,100,0,52.4276,NA,ENSG00000104859::CLASRP,1455,1478,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.121382326559877,0,,-477,-454
+rs75463276,23,14,37,plus,GCTCCAGAGCTCCTGAGCCA NGG,NA,NA,,NA,NA,16 36 12 36,100,0,69.1858,NA,ENSG00000104866::PPP1R37,44167,44190,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.375969418893477,0.3833252528,,-486,-463
+rs75463276,23,20,43,plus,GAGCTCCTGAGCCAGGGGCT NGG,NA,NA,,NA,NA,20 28 12 40,100,0,58.3385,NA,ENSG00000104866::PPP1R37,44173,44196,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0576316947466623,0.1592976132,,-480,-457
+rs75463276,23,13,36,plus,GGCTCCAGAGCTCCTGAGCC NGG,NA,NA,,NA,NA,16 32 12 40,84.3478,0,55.7248,NA,ENSG00000104866::PPP1R37,44166,44189,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.0201588738760945,0.0660830552,,-487,-464
+rs75463276,23,13,36,plus,GGCTCCAGAGCTCCTGAGCC NGG,NA,NA,,NA,NA,16 32 12 40,84.3478,0,55.7248,NA,ENSG00000187258::NPSR1,156017,156040,MMMMMMMMMMMMMXMMMMMMMMM,1,2,rc,0,0,0.7,0.0201588738760945,0.0660830552,,-487,-464
+rs76271385,23,19,42,plus,GCTGAAGATGGCAGAAGCCA NGG,NA,NA,,NA,NA,32 20 8 40,100,0,79.2933,NA,ENSG00000104866::PPP1R37,18202,18225,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.833118446855646,0.5315470472,,-481,-458
+rs35577563,23,25,48,minus,GAGCTTCAGGATCGAGAGGT NGG,NA,NA,,NA,NA,20 48 20 12,84.3478,0,56.4762,NA,2,170084513,170084536,MMMMMMMMMMXMMMMMMMMMMMM,1,2,rc,0,0,0.6,0,0.2238107684,,-475,-452
+rs35577563,23,25,48,minus,GAGCTTCAGGATCGAGAGGT NGG,NA,NA,,NA,NA,20 48 20 12,84.3478,0,56.4762,NA,19,45001091,45001114,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0,0.2238107684,,-475,-452
+rs12461065,23,3,26,minus,GGCCAAGGACACGCTGGCTG NGG,NA,NA,,NA,NA,8 44 20 28,100,0,58.1769,NA,ENSG00000104866::PPP1R37,10632,10655,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.108845218374069,0,,-497,-474
+rs12461065,23,2,25,minus,GCCAAGGACACGCTGGCTGG NGG,NA,NA,,NA,NA,8 48 20 24,100,0,56,NA,ENSG00000104866::PPP1R37,10631,10654,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-498,-475
+rs117261169,23,19,42,plus,GAGGCTCGGCTTTGCCTCCT NGG,NA,NA,,NA,NA,4 32 28 36,100,0,53.5471,NA,ENSG00000104853::CLPTM1,33183,33206,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.00813382838299056,-0.0307756132,,-481,-458
+rs117261169,23,3,26,minus,GAGCCTCACGCCACAGACAC NGG,NA,NA,,NA,NA,4 24 28 44,100,0,52.808,NA,ENSG00000104853::CLPTM1,33167,33190,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.140401681573419,0,,-497,-474
+rs145903417,23,23,46,minus,GAAGAGGTCTGAGGCCAGAA NGG,NA,NA,,NA,NA,12 40 32 16,100,0,59.8891,NA,ENSG00000104866::PPP1R37,34448,34471,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.117371608065114,0.2770868984,,-477,-454
+rs145903417,23,0,23,plus,GGGAAGACAGGAAGAGAAGT NGG,NA,NA,,NA,NA,36 12 4 48,100,0,56.48,NA,ENSG00000104866::PPP1R37,34425,34448,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0.32400043,,-500,-477
+rs145903417,23,9,32,plus,GGAAGAGAAGTGGGCCATTC NGG,NA,NA,,NA,NA,24 20 16 40,100,0,50.3635,NA,ENSG00000104866::PPP1R37,34434,34457,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0205137649190101,-0.1023368176,,-491,-468
+rs7251911,23,24,47,minus,GTGGTCGCGGGCTGGCTCGC NGG,NA,NA,,NA,NA,16 48 8 28,100,0,59.0149,NA,ENSG00000267348::CTB-179K24.3,2633,2656,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0.2507498672,,-476,-453
+rs7251911,23,2,25,minus,GCTTGGAAGCCAGCACAGCC NGG,NA,NA,,NA,NA,8 36 24 32,100,0,56,NA,ENSG00000267348::CTB-179K24.3,2611,2634,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-498,-475
+rs3865444,23,4,27,plus,GCAGCCTCACCTAGATCCAT NGG,NA,NA,,NA,NA,20 32 20 28,100,0,57.6662,NA,19,51224704,51224727,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.216875573372553,0.1664391324,,-496,-473
+rs57891859,23,8,31,minus,GTGCTTGGGAACGATAAACC NGG,NA,NA,,NA,NA,20 36 24 20,100,0,58.0279,NA,ENSG00000152128::TMEM163,251270,251293,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.103130970702177,0.2982689232,,-492,-469
+rs34311866,23,20,43,minus,GCATCTTCCAGCTGGCCATG NGG,NA,NA,,NA,NA,24 28 16 32,100,0,59.426,NA,ENSG00000127419::TMEM175,25754,25777,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.27527179976429,0.0960300156,,-480,-457
+rs9291637,23,14,37,minus,GAAGTTCCAAGCCACCAGGA NGG,NA,NA,,NA,NA,12 36 28 24,100,0,68.0072,NA,ENSG00000109743::BST1,19077,19100,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.312566250333789,0.3877959348,,-486,-463
+rs3775121,23,21,44,plus,GAGCGTCTGCATCTAACCCT NGG,NA,NA,,NA,NA,16 32 20 32,100,0,58.4637,NA,ENSG00000178950::GAK,50437,50460,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.323187577265067,0,,-479,-456
+rs12640185,23,19,42,plus,GGGATATAGAATGAGGTACA NGG,NA,NA,,NA,NA,32 8 20 40,100,0,59.559,NA,ENSG00000138760::SCARB2,52464,52487,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.210327029769144,0.1676269684,,-481,-458
+rs4373155,23,24,47,plus,GTATGCAGAACTGGTAACTG NGG,NA,NA,,NA,NA,32 16 20 32,100,0,62.4861,NA,4,11021174,11021197,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.624308505785231,0,,-476,-453
+rs4373155,23,15,38,plus,GGTCTGTGTGTATGCAGAAC NGG,NA,NA,,NA,NA,20 12 32 36,100,0,53.0528,NA,4,11021165,11021188,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0750639569497454,0.0775764796,,-485,-462
+rs72657707,23,20,43,plus,GTGAACAATGAAAGTGCCTG NGG,NA,NA,,NA,NA,28 12 20 40,100,0,59.1228,NA,ENSG00000251095::RP11-115D19.1,105999,106022,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.129386724118458,0.2267559184,,-480,-457
+rs72657707,23,22,45,plus,GAACAATGAAAGTGCCTGTG NGG,NA,NA,,NA,NA,28 16 16 40,100,0,54.5348,NA,ENSG00000251095::RP11-115D19.1,106001,106024,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0267435374016681,0,,-478,-455
+rs10423015,23,12,35,plus,GTGGTTTGCACTTGTGTATC NGG,NA,NA,,NA,NA,8 12 44 36,100,0,43.1587,NA,ENSG00000012061::ERCC1,44442,44465,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.00773477392103554,-0.2497987476,,-488,-465
+rs77988534,23,13,36,plus,GTGTCAGGCTGTGGGTATGA NGG,NA,NA,,NA,NA,12 8 28 52,100,0,62.9827,NA,ENSG00000104892::KLC3,7804,7827,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.364499025997286,0.1846370888,,-487,-464
+rs6599388,23,22,45,minus,GAGTGAGGAGACAGAGACGG NGG,NA,NA,,NA,NA,4 56 28 12,100,0,77.7481,NA,ENSG00000127419::TMEM175,12909,12932,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.578324592441934,0.6090836344,,-478,-455
+rs6599388,23,20,43,minus,GTGAGGAGACAGAGACGGCG NGG,NA,NA,,NA,NA,4 56 28 12,100,0,71.0474,NA,ENSG00000127419::TMEM175,12907,12930,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.329235683626816,0.4231373988,,-480,-457
+rs6599388,23,25,48,minus,GGGGAGTGAGGAGACAGAGA NGG,NA,NA,,NA,NA,4 56 28 12,100,0,63.2471,NA,ENSG00000127419::TMEM175,12912,12935,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0.56235524,,-475,-452
+rs6599388,23,13,36,minus,GACAGAGACGGCGGGGGCCT NGG,NA,NA,,NA,NA,4 56 20 20,100,0,41.7832,NA,ENSG00000127419::TMEM175,12900,12923,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.9,0.00985361082327314,0.179306704,,-487,-464
+rs6599389,23,20,43,minus,GCTGAGGCAGCAACAAACGG NGG,NA,NA,,NA,NA,4 36 36 24,100,0,82.3062,NA,ENSG00000127419::TMEM175,12933,12956,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.689954299241673,0.8253579136,,-480,-457
+rs6599389,23,23,46,minus,GAAGCTGAGGCAGCAACAAA NGG,NA,NA,,NA,NA,4 32 40 24,100,0,65.9555,NA,ENSG00000127419::TMEM175,12936,12959,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.290422137551436,0.5073574868,,-477,-454
+rs6599389,23,11,34,minus,GCAACAAACGGCGGGGAGTG NGG,NA,NA,,NA,NA,4 44 32 20,100,0,58.0387,NA,ENSG00000127419::TMEM175,12924,12947,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.066817377040874,0.1351201616,,-489,-466
+rs11694743,23,19,42,minus,GGGGCGGGGCGGGGGATGGA NGG,NA,NA,,NA,NA,8 76 8 8,84.3478,0,59.2589,NA,ENSG00000136717::BIN1,36998,37021,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.7,0.0357718421523877,0.227174484,,-481,-458
+rs11694743,23,19,42,minus,GGGGCGGGGCGGGGGATGGA NGG,NA,NA,,NA,NA,8 76 8 8,84.3478,0,59.2589,NA,X,82430573,82430596,MMMMMMMXMMMMMMMMMMMMMMM,1,2,rc,0,0,0.7,0.0357718421523877,0.227174484,,-481,-458
+rs75087725,23,14,37,plus,GCACCGGCTCACAGGCTCCA NGG,NA,NA,,NA,NA,16 36 12 36,100,0,69.542,NA,ENSG00000184441::AP001062.7,1989,2012,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.622910037741518,0.154192928,,-486,-463
+rs75087725,23,13,36,plus,GGCACCGGCTCACAGGCTCC NGG,NA,NA,,NA,NA,16 36 12 36,100,0,56.5388,NA,ENSG00000184441::AP001062.7,1988,2011,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0104265050350493,0.1165135964,,-487,-464
+rs346750,23,10,33,plus,GGTGCCGGAGCTCTTATTCT NGG,NA,NA,,NA,NA,16 24 28 32,100,0,48.3245,NA,ENSG00000130201::EXOC3L2,21324,21347,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.3,0.0477836910231419,0.0684460848,,-490,-467
+rs17783233,23,7,30,minus,GTTTATTTCAGTGAGGTGTG NGG,NA,NA,,NA,NA,36 48 12 4,100,0,60.5787,NA,ENSG00000145217::SLC26A1,3719,3742,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.214192463660507,0.1147429348,,-493,-470
+rs17783233,23,9,32,minus,GGGTTTATTTCAGTGAGGTG NGG,NA,NA,,NA,NA,36 40 16 8,100,0,60.3675,NA,ENSG00000145217::SLC26A1,3721,3744,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0982809609161979,0.3200960092,,-491,-468
+rs17783233,23,8,31,minus,GGTTTATTTCAGTGAGGTGT NGG,NA,NA,,NA,NA,36 44 16 4,100,0,56.4464,NA,ENSG00000145217::SLC26A1,3720,3743,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.051562815557287,0.1707578028,,-492,-469
+rs75548401,23,8,31,minus,GAAGCACTGGATAAACATGA NGG,NA,NA,,NA,NA,12 32 40 16,64.3478,0,61.9527,NA,1,41252,41275,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.4,0.381650311261868,0.3159890144,,-492,-469
+rs75548401,23,8,31,minus,GAAGCACTGGATAAACATGA NGG,NA,NA,,NA,NA,12 32 40 16,64.3478,0,61.9527,NA,19,82863,82886,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.4,0.381650311261868,0.3159890144,,-492,-469
+rs75548401,23,8,31,minus,GAAGCACTGGATAAACATGA NGG,NA,NA,,NA,NA,12 32 40 16,64.3478,0,61.9527,NA,15,101949689,101949712,MMMMMMMMMMMMMMMMMMXMMMM,1,3,fw,0,0,0.4,0.381650311261868,0.3159890144,,-492,-469
+rs6127744,23,8,31,plus,GATAGAACTTGAGCCTGGCT NGG,NA,NA,,NA,NA,28 16 24 32,100,0,59.7739,NA,20,56411201,56411224,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.130223604436801,0.1584753988,,-492,-469
+rs6127744,23,21,44,minus,GGTGCCCATTCTTCCAAGCC NGG,NA,NA,,NA,NA,24 24 20 32,100,0,59.674,NA,20,56411214,56411237,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.07843853597284,0.3052636712,,-479,-456
+rs6705834,23,26,49,minus,GAAGGGGATTACCCTTCTTG NGG,NA,NA,,NA,NA,25 37 20 16,80,0,58.1881,NA,ENSG00000168918::INPP5D,53147,53170,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0,0.3094062636,,-474,-451
+rs6705834,23,26,49,minus,GAAGGGGATTACCCTTCTTG NGG,NA,NA,,NA,NA,25 37 20 16,80,0,58.1881,NA,ENSG00000281614::INPP5D,53147,53170,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0,0.3094062636,,-474,-451
+rs111716486,23,1,24,minus,GGCCTCCCAAAGTGCCAAAC NGG,NA,NA,,NA,NA,16 24 28 32,84.3478,0,50,NA,ENSG00000078070::MCCC1,76564,76587,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.5,0,0,,-499,-476
+rs111716486,23,1,24,minus,GGCCTCCCAAAGTGCCAAAC NGG,NA,NA,,NA,NA,16 24 28 32,84.3478,0,50,NA,ENSG00000179397::C1orf101,185056,185079,MMMXMMMMMMMMMMMMMMMMMMM,1,2,rc,0,0,0.5,0,0,,-499,-476
+rs13032148,23,4,27,plus,GGCTGCTGGGAGAACGCGCC NGG,NA,NA,,NA,NA,16 28 8 48,100,0,59.6817,NA,2,127107503,127107526,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.0670793835435742,0.1170084984,,-496,-473
+rs13032148,23,0,23,minus,GCGCGTTCTCCCAGCAGCCG NGG,NA,NA,,NA,NA,12 40 8 40,100,0,56,NA,2,127107499,127107522,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-500,-477
+rs183442275,23,25,48,minus,GGCTGACAGGAGGAGGGTCG NGG,NA,NA,,NA,NA,8 64 16 12,100,0,62.4356,NA,ENSG00000007047::MARK4,224007,224030,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0.3217842496,,-475,-452
+rs183442275,23,26,49,minus,GGGCTGACAGGAGGAGGGTC NGG,NA,NA,,NA,NA,8 62 16 12,84.3478,0,58.147,NA,ENSG00000007047::MARK4,224008,224031,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.8,0,0.1073501188,,-474,-451
+rs183442275,23,26,49,minus,GGGCTGACAGGAGGAGGGTC NGG,NA,NA,,NA,NA,8 62 16 12,84.3478,0,58.147,NA,ENSG00000241973::PI4KA,150833,150856,MMMMXMMMMMMMMMMMMMMMMMM,1,2,rc,0,0,0.8,0,0.1073501188,,-474,-451
+rs183442275,23,27,50,minus,GGGGCTGACAGGAGGAGGGT NGG,NA,NA,,NA,NA,8 60 17 13,68.6956,0,60.6513,NA,21,46011360,46011383,MMMXMMMMMMMMMMMMMMMMMMM,1,3,rc,0,0,0.7,0,0.3325696076,,-473,-450
+rs183442275,23,27,50,minus,GGGGCTGACAGGAGGAGGGT NGG,NA,NA,,NA,NA,8 60 17 13,68.6956,0,60.6513,NA,ENSG00000007047::MARK4,224009,224032,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0,0.3325696076,,-473,-450
+rs183442275,23,27,50,minus,GGGGCTGACAGGAGGAGGGT NGG,NA,NA,,NA,NA,8 60 17 13,68.6956,0,60.6513,NA,13,98593746,98593769,MMMMMMMMMMMMMMMXMMMMMMM,1,3,rc,0,0,0.7,0,0.3325696076,,-473,-450
+rs45486093,23,14,37,plus,GAGCTGTCCCCTGTCCCCGG NGG,NA,NA,,NA,NA,8 40 16 36,100,0,72.5242,NA,ENSG00000178950::GAK,32596,32619,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.254189480595469,0.5720209888,,-486,-463
+rs45486093,23,21,44,minus,GCGTGGCCCTCCGGGGACAG NGG,NA,NA,,NA,NA,12 48 8 32,100,0,68.6441,NA,ENSG00000178950::GAK,32603,32626,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0.213357078735259,0.4188510008,,-479,-456
+rs45486093,23,8,31,minus,GGGACAGGGGACAGCTCTGT NGG,NA,NA,,NA,NA,12 52 16 20,100,0,56.3567,NA,ENSG00000178950::GAK,32590,32613,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0378539616735855,0.1799854272,,-492,-469
+rs45486093,23,9,32,minus,GGGGACAGGGGACAGCTCTG NGG,NA,NA,,NA,NA,12 48 16 24,84.3478,0,56.1679,NA,ENSG00000158816::VWA5B1,2434,2457,MMMMMMMXMMMMMMMMMMMMMMM,1,2,fw,0,0,0.6,0.0157050345475943,0.192690824,,-491,-468
+rs45486093,23,9,32,minus,GGGGACAGGGGACAGCTCTG NGG,NA,NA,,NA,NA,12 48 16 24,84.3478,0,56.1679,NA,ENSG00000178950::GAK,32591,32614,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0.0157050345475943,0.192690824,,-491,-468
+rs4663096,23,9,32,minus,GGCCTGACGCAGGCTGATGG NGG,NA,NA,,NA,NA,20 48 12 20,100,0,60.6183,NA,ENSG00000136717::BIN1,56147,56170,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.107916375052609,0.3230027736,,-491,-468
+rs35519415,23,8,31,minus,GAGTTTGGATTTCTTCATGT NGG,NA,NA,,NA,NA,48 28 16 8,84.3478,0,52.7531,NA,ENSG00000109743::BST1,5740,5763,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.4,0.0763916093699278,0.1612672392,,-492,-469
+rs35519415,23,8,31,minus,GAGTTTGGATTTCTTCATGT NGG,NA,NA,,NA,NA,48 28 16 8,84.3478,0,52.7531,NA,17,20793478,20793501,MMMMMMMMMMMMMMMMMXMMMMM,1,2,rc,0,0,0.4,0.0763916093699278,0.1612672392,,-492,-469
+rs345421,23,3,26,plus,GCAGATGGGGGAGCGGATGG NGG,NA,NA,,NA,NA,16 8 8 68,100,0,65.8295,NA,ENSG00000007047::MARK4,187181,187204,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0,0.4914757264,,-497,-474
+rs345421,23,15,38,plus,GCGGATGGGGGGGAGGGGAC NGG,NA,NA,,NA,NA,20 8 4 68,100,0,59.4265,NA,ENSG00000007047::MARK4,187193,187216,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.00310165046980257,0.2682262668,,-485,-462
+rs345421,23,9,32,plus,GGGGGAGCGGATGGGGGGGA NGG,NA,NA,,NA,NA,16 4 4 76,100,0,45.6261,NA,ENSG00000007047::MARK4,187187,187210,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.9,0.0220826090113763,0.359225428,,-491,-468
+rs345421,23,10,33,plus,GGGGAGCGGATGGGGGGGAG NGG,NA,NA,,NA,NA,16 8 4 72,100,0,45.4643,NA,ENSG00000007047::MARK4,187188,187211,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.9,0.00833778872617648,0.3648821908,,-490,-467
+rs345421,23,18,41,plus,GATGGGGGGGAGGGGACAGG NGG,NA,NA,,NA,NA,24 4 4 68,84.3478,0,67.8541,NA,ENSG00000007047::MARK4,187196,187219,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0.143351720257097,0.5493553912,,-482,-459
+rs345421,23,18,41,plus,GATGGGGGGGAGGGGACAGG NGG,NA,NA,,NA,NA,24 4 4 68,84.3478,0,67.8541,NA,ENSG00000128268::MGAT3,33701,33724,MMMMMMMMMMMMMMMMMMMMMXM,1,2,rc,0,0,0.7,0.143351720257097,0.5493553912,,-482,-459
+rs55636820,23,6,29,plus,GGGGGCTTCAGAACCACCCG NGG,NA,NA,,NA,NA,20 32 8 40,100,0,80.6454,NA,ENSG00000136717::BIN1,6634,6657,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.598258968231681,0.6340116652,,-494,-471
+rs2737029,23,22,45,minus,GGATAGATAAGTCTCTCATA NGG,NA,NA,,NA,NA,28 28 32 12,100,0,55.397,NA,ENSG00000145335::SNCA,66500,66523,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.212238775156404,0.1576120448,,-478,-455
+rs143202663,23,2,25,minus,GACGTATGTGCTGCCAGGCT NGG,NA,NA,,NA,NA,24 40 16 20,100,0,56,NA,6,40897478,40897501,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,0,,-498,-475
+rs143332484,23,20,43,minus,GAAGGGCCCATGCCAGCGTG NGG,NA,NA,,NA,NA,12 44 20 24,100,0,63.34,NA,ENSG00000095970::TREM2,2958,2981,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.142312054263863,0.3246912,,-480,-457
+rs143332484,23,13,36,plus,GTGCTGACCACACGCTGGCA NGG,NA,NA,,NA,NA,16 32 16 36,100,0,59.2739,NA,ENSG00000095970::TREM2,2951,2974,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0393995795877968,0.2243000068,,-487,-464
+rs9268544,23,27,50,plus,GCAGTGACTCTAGATCCTAC NGG,NA,NA,,NA,NA,21 26 26 26,100,0,50,NA,6,3657979,3658002,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-473,-450
+rs10514906,23,22,45,plus,GATCCAGTTGTATTTCCCTG NGG,NA,NA,,NA,NA,12 24 40 24,100,0,60.7832,NA,ENSG00000251279::CTC-436P18.1,16664,16687,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.539164396437592,0,,-478,-455
+rs79485747,23,9,32,minus,GATATTTAAGCTGAGCACAG NGG,NA,NA,,NA,NA,24 32 32 12,100,0,64.3357,NA,6,40783121,40783144,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.201307999205985,0.4154818988,,-491,-468
+rs1980493,23,1,24,plus,GAGGACTCACCTTGTTGCTT NGG,NA,NA,,NA,NA,12 20 40 28,100,0,47.118,NA,ENSG00000168994::PXDC1,5056,5079,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0,-0.0440975584,,-499,-476
+rs9268840,23,18,41,plus,GTCTTCACCCCATGGGGTGG NGG,NA,NA,,NA,NA,12 24 24 40,100,0,59.9921,NA,6,3793262,3793285,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0342941775557739,0.2653115928,,-482,-459
+rs3806157,23,17,40,plus,GTCATCTGTAATGAGATGTC NGG,NA,NA,,NA,NA,28 12 28 32,100,0,51.1955,NA,ENSG00000168994::PXDC1,15631,15654,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0286166717737177,-0.0688393224,,-483,-460
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000227384::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000226035::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000237591::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000234164::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000232705::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000228260::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000196301::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMMMMM,0,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs9268840,23,6,29,minus,GTGGACCTGTGTTGGGGTCA NGG,NA,NA,,NA,NA,36 44 8 12,0,0,52.1333,NA,ENSG00000227526::HLA-DRB9,1187,1210,MMMMMMMMMMMMMMMMMMMXMMM,1,8,rc,0,0,0.6,0.00666555892617407,0,,-494,-471
+rs33915496,23,18,41,minus,GAAGATATCCCTCACTAATA NGG,NA,NA,,NA,NA,24 16 40 20,44.3478,0,48.2619,NA,ENSG00000206306::HLA-DRB1,100193,100216,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.3,0.0533990275830432,0.059698036,,-482,-459
+rs33915496,23,18,41,minus,GAAGATATCCCTCACTAATA NGG,NA,NA,,NA,NA,24 16 40 20,44.3478,0,48.2619,NA,6,32616195,32616218,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.3,0.0533990275830432,0.059698036,,-482,-459
+rs33915496,23,18,41,minus,GAAGATATCCCTCACTAATA NGG,NA,NA,,NA,NA,24 16 40 20,44.3478,0,48.2619,NA,ENSG00000206240::HLA-DRB1,100558,100581,MMMMMMMMMMMMMMMMMMMMMMM,0,4,rc,0,0,0.3,0.0533990275830432,0.059698036,,-482,-459
+rs33915496,23,18,41,minus,GAAGATATCCCTCACTAATA NGG,NA,NA,,NA,NA,24 16 40 20,44.3478,0,48.2619,NA,ENSG00000228080::HLA-DRB1,167090,167113,MMMMMMMXMMMMMMMMMMMMMMM,1,4,rc,0,0,0.3,0.0533990275830432,0.059698036,,-482,-459
+rs2858331,23,2,25,plus,GAATTGAATACATTATCAAA NGG,NA,NA,,NA,NA,40 12 28 20,100,0,53.8666,NA,6,4012234,4012257,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.3,0,0.3933331256,,-498,-475
+rs510205,23,18,41,plus,GTTACAATTAAAGCAAACAT NGG,NA,NA,,NA,NA,40 20 20 20,100,0,69.371,NA,ENSG00000230648::RP3-406P24.3,127,150,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.457293963952927,0.5112572396,,-482,-459
+rs149839148,23,4,27,plus,GATACGGCTGCTTCCTCCCC NGG,NA,NA,,NA,NA,8 40 28 24,100,0,61.9607,NA,6,3813304,3813327,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.0715153268687254,0.3265245296,,-496,-473
+rs149839148,23,22,45,minus,GTCACCAGAGGAAAGCAGCC NGG,NA,NA,,NA,NA,4 36 36 24,84.3478,0,58.4183,NA,6,3813322,3813345,MMMMMMMMMMMMMMMMMMMMMMM,0,2,rc,0,0,0.6,0.170718616379226,0.150200272,,-478,-455
+rs149839148,23,22,45,minus,GTCACCAGAGGAAAGCAGCC NGG,NA,NA,,NA,NA,4 36 36 24,84.3478,0,58.4183,NA,ENSG00000256069::A2MP1,16529,16552,MMMMMMMMMMMMMMMMMMXMMMM,1,2,fw,0,0,0.6,0.170718616379226,0.150200272,,-478,-455
+rs9275111,23,18,41,plus,GGCTTCGGTACAGGACAGGT NGG,NA,NA,,NA,NA,20 16 16 48,100,0,62.9636,NA,ENSG00000185689::C6orf201,22272,22295,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.169329340514266,0.2788553432,,-482,-459
+rs9275111,23,17,40,plus,GGGCTTCGGTACAGGACAGG NGG,NA,NA,,NA,NA,20 16 16 48,100,0,60.3708,NA,ENSG00000185689::C6orf201,22271,22294,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0661332501233323,0.3524100384,,-483,-460
+rs9275111,23,9,32,plus,GTTGCAGGGGGCTTCGGTAC NGG,NA,NA,,NA,NA,16 20 20 44,100,0,54.8742,NA,ENSG00000185689::C6orf201,22263,22286,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0145190261461364,0.2291927528,,-491,-468
+rs9275111,23,7,30,plus,GACTACATCTTGGCTCTTCA NGG,NA,NA,,NA,NA,16 28 32 24,100,0,57.8867,NA,6,3876228,3876251,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.323544177451819,-0.0292084504,,-493,-470
+rs9275111,23,6,29,plus,GGACTACATCTTGGCTCTTC NGG,NA,NA,,NA,NA,16 28 28 28,100,0,48.5434,NA,6,3876227,3876250,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.00983359899572342,-0.1826616372,,-494,-471
+rs1980493,23,19,42,plus,GCAACCCACGCGAAGGGTGT NGG,NA,NA,,NA,NA,28 24 12 36,100,0,55.2535,NA,6,3700414,3700437,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.0711569123079726,0.1915184084,,-481,-458
+rs2858331,23,23,46,minus,GGAGGAGGTGCTGGGCCCAA NGG,NA,NA,,NA,NA,8 52 20 20,100,0,75.94,NA,6,3957581,3957604,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.622520012646236,0.37448238,,-477,-454
+rs2858331,23,8,31,plus,GCTCTAAATGGGCTGCCCTT NGG,NA,NA,,NA,NA,12 32 24 32,100,0,68.4581,NA,6,3957596,3957619,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.536633115940291,0.186276032,,-492,-469
+rs3806157,23,9,32,plus,GCTGAGCAGGGGATGAGGTT NGG,NA,NA,,NA,NA,20 8 16 56,100,0,56.1312,NA,6,3721936,3721959,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.10877163149347,0.19779111,,-491,-468
+rs3806157,23,8,31,plus,GGCTGAGCAGGGGATGAGGT NGG,NA,NA,,NA,NA,16 8 16 60,100,0,54.235,NA,6,3721935,3721958,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0420905725276714,0.1696629532,,-492,-469
+rs33915496,23,7,30,plus,GCTGCCTCTCCCAGCACTGC NGG,NA,NA,,NA,NA,12 44 20 24,100,0,56.934,NA,ENSG00000238158::RP11-420L9.4,22618,22641,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.0806733643585056,0.1660272476,,-493,-470
+rs33915496,23,1,24,plus,GCCCGAAGCCAGCCTCGGGC NGG,NA,NA,,NA,NA,20 36 8 36,100,0,61.6759,NA,6,4018248,4018271,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0,0.283798518,,-499,-476
+rs3806157,23,4,27,minus,GCTTGGAAATGAGACGTGTG NGG,NA,NA,,NA,NA,28 44 20 8,100,0,54.0891,NA,6,3629049,3629072,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.104457308303407,0,,-496,-473
+rs9275614,23,11,34,minus,GAAATCAGCTTGTTCACAGT NGG,NA,NA,,NA,NA,24 32 28 16,100,0,56.54,NA,ENSG00000260604::RP1-140K8.5,5796,5819,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.107128515787324,0.219875164,,-489,-466
+rs9275614,23,0,23,minus,GTTCACAGTGGGGCCAGAGC NGG,NA,NA,,NA,NA,24 40 16 20,100,0,54,NA,ENSG00000260604::RP1-140K8.5,5785,5808,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0,0,,-500,-477
+rs9268840,23,12,35,minus,GATTATTTGTTTCAGACAGA NGG,NA,NA,,NA,NA,36 28 28 8,100,0,59.6637,NA,6,3765266,3765289,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.5,0.222149656155558,0.2610386996,,-488,-465
+rs9275614,23,13,36,plus,GCAGGAGCCTGGGGCATGGG NGG,NA,NA,,NA,NA,12 20 8 60,100,0,67.7694,NA,ENSG00000254821::RP3-400B16.4,346,369,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.231263277405128,0.3572085564,,-487,-464
+rs9275614,23,2,25,plus,GCAGAGCCCAGGCAGGAGCC NGG,NA,NA,,NA,NA,20 28 4 48,100,0,58.4324,NA,ENSG00000254821::RP3-400B16.4,335,358,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0.2216216832,,-498,-475
+rs9275614,23,26,49,plus,GCATGGGCGGGGCCAGGGTT NGG,NA,NA,,NA,NA,8 16 12 62,100,0,54,NA,ENSG00000254821::RP3-400B16.4,359,382,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0,,-474,-451
+rs9275614,23,25,48,plus,GGCATGGGCGGGGCCAGGGT NGG,NA,NA,,NA,NA,8 16 12 64,84.3478,0,54,NA,ENSG00000130164::LDLR,16238,16261,MMXMMMMMMMMMMMMMMMMMMMM,1,2,fw,0,0,0.7,0,0,,-475,-452
+rs9275614,23,25,48,plus,GGCATGGGCGGGGCCAGGGT NGG,NA,NA,,NA,NA,8 16 12 64,84.3478,0,54,NA,ENSG00000254821::RP3-400B16.4,358,381,MMMMMMMMMMMMMMMMMMMMMMM,0,2,fw,0,0,0.7,0,0,,-475,-452
+rs510205,23,2,25,plus,GAAGAAACGTTTACTGAGAA NGG,NA,NA,,NA,NA,44 12 16 28,100,0,51.4891,NA,ENSG00000112739::PRPF4B,8410,8433,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0,0.1744578756,,-498,-475
+rs482044,23,18,41,plus,GGCTGTGGAGATTAGAAGTT NGG,NA,NA,,NA,NA,24 4 28 44,100,0,54.0798,NA,ENSG00000230648::RP3-406P24.3,2200,2223,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.3,0.323904056324927,0.080086562,,-482,-459
+rs9275111,23,9,32,plus,GTGGCCTGTTAATACTTGGG NGG,NA,NA,,NA,NA,16 12 32 40,100,0,62.885,NA,6,3919152,3919175,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.293926339916752,0.3503245868,,-491,-468
+rs9275111,23,6,29,plus,GTGGTGGCCTGTTAATACTT NGG,NA,NA,,NA,NA,16 12 32 40,100,0,54.7018,NA,6,3919149,3919172,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.3,0.210194895454764,0.224898862,,-494,-471
+rs3957148,23,11,34,minus,GAGAAGCGCACACATCCTGA NGG,NA,NA,,NA,NA,8 36 32 24,100,0,74.5797,NA,ENSG00000260604::RP1-140K8.5,3676,3699,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.752079540239029,0.3769096996,,-489,-466
+rs33915496,23,26,49,minus,GGAGATAACAAGATAATATA NGG,NA,NA,,NA,NA,20 25 50 4,100,0,43.9895,NA,ENSG00000112739::PRPF4B,7701,7724,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.1,0,0.0994758188,,-474,-451
+rs1980493,23,15,38,minus,GCATAACTATAAGCCAGGCA NGG,NA,NA,,NA,NA,16 24 36 24,100,0,77.2835,NA,6,3711347,3711370,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.8,0.700890785674494,0.3632864108,,-485,-462
+rs9268840,23,7,30,minus,GGGGTTCCATTCCTTACAGT NGG,NA,NA,,NA,NA,36 32 12 20,100,0,59.1361,NA,6,3801893,3801916,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.4,0.405213140627489,0.1515937956,,-493,-470
+rs9268840,23,26,49,minus,GGGTGAGCCCTGTCAGTTGG NGG,NA,NA,,NA,NA,25 50 8 16,100,0,58.2814,NA,6,3801912,3801935,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0,0.3140743312,,-474,-451
+rs9268840,23,18,41,plus,GAATGGAACCCCCAACTGAC NGG,NA,NA,,NA,NA,32 32 8 28,100,0,54.3649,NA,6,3801904,3801927,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0578594804976246,0.1603900928,,-482,-459
+rs3957148,23,2,25,plus,GTGGCAAACTCCTGCCGACA NGG,NA,NA,,NA,NA,24 32 12 32,100,0,57.7883,NA,6,3958442,3958465,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0,0.1894166876,,-498,-475
+rs3957148,23,26,49,plus,GACAGCTAGTTAGTGATTCA NGG,NA,NA,,NA,NA,29 16 25 29,100,0,50,NA,6,3958466,3958489,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-474,-451
+rs9275111,23,25,48,minus,GGACAACTCAAAGCTGGAGT NGG,NA,NA,,NA,NA,12 40 28 20,68.6956,0,61.227,NA,6,3973815,3973838,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0,0.3613518244,,-475,-452
+rs9275111,23,25,48,minus,GGACAACTCAAAGCTGGAGT NGG,NA,NA,,NA,NA,12 40 28 20,68.6956,0,61.227,NA,ENSG00000065615::CYB5R4,96709,96732,MMMMMMMMMMMMMMMMMMXMMMM,1,3,fw,0,0,0.7,0,0.3613518244,,-475,-452
+rs9275111,23,25,48,minus,GGACAACTCAAAGCTGGAGT NGG,NA,NA,,NA,NA,12 40 28 20,68.6956,0,61.227,NA,X,50114051,50114074,MMMMMMMMMMMMMMMMMXMMMMM,1,3,fw,0,0,0.7,0,0.3613518244,,-475,-452
+rs9275111,23,24,47,minus,GACAACTCAAAGCTGGAGTG NGG,NA,NA,,NA,NA,12 44 28 16,68.6956,0,58.2517,NA,6,3973814,3973837,MMMMMMMMMMMMMMMMMMMMMMM,0,3,rc,0,0,0.7,0,0.2125869416,,-476,-453
+rs9275111,23,24,47,minus,GACAACTCAAAGCTGGAGTG NGG,NA,NA,,NA,NA,12 44 28 16,68.6956,0,58.2517,NA,ENSG00000065615::CYB5R4,96710,96733,MMMMMMMMMMMMMMMMMXMMMMM,1,3,fw,0,0,0.7,0,0.2125869416,,-476,-453
+rs9275111,23,24,47,minus,GACAACTCAAAGCTGGAGTG NGG,NA,NA,,NA,NA,12 44 28 16,68.6956,0,58.2517,NA,X,50114052,50114075,MMMMMMMMMMMMMMMMXMMMMMM,1,3,fw,0,0,0.7,0,0.2125869416,,-476,-453
+rs9275111,23,26,49,minus,GGGACAACTCAAAGCTGGAG NGG,NA,NA,,NA,NA,12 37 29 20,37.3913,0,56.7829,NA,7,15127057,15127080,MMMMXMMMMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0,0.2391493024,,-474,-451
+rs9275111,23,26,49,minus,GGGACAACTCAAAGCTGGAG NGG,NA,NA,,NA,NA,12 37 29 20,37.3913,0,56.7829,NA,16,87874523,87874546,MMMMMMMXMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0,0.2391493024,,-474,-451
+rs9275111,23,26,49,minus,GGGACAACTCAAAGCTGGAG NGG,NA,NA,,NA,NA,12 37 29 20,37.3913,0,56.7829,NA,4,95933225,95933248,MMMMMMMXMMMMMMMMMMMMMMM,1,5,rc,0,0,0.6,0,0.2391493024,,-474,-451
+rs9275111,23,26,49,minus,GGGACAACTCAAAGCTGGAG NGG,NA,NA,,NA,NA,12 37 29 20,37.3913,0,56.7829,NA,6,3973816,3973839,MMMMMMMMMMMMMMMMMMMMMMM,0,5,rc,0,0,0.6,0,0.2391493024,,-474,-451
+rs9275111,23,26,49,minus,GGGACAACTCAAAGCTGGAG NGG,NA,NA,,NA,NA,12 37 29 20,37.3913,0,56.7829,NA,X,50114050,50114073,MMMMMMMMMMMMMMMMMMXMMMM,1,5,fw,0,0,0.6,0,0.2391493024,,-474,-451
+rs620490,23,6,29,plus,GTTGGCTTTCAATTCTTGGT NGG,NA,NA,,NA,NA,8 12 44 36,100,0,50.8104,NA,ENSG00000253496::RP11-13N12.1,163146,163169,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.0705673344744407,0.0699545856,,-494,-471
+rs620490,23,27,50,plus,GGGGATTGAGTGGGCAGAAT NGG,NA,NA,,NA,NA,21 4 21 52,100,0,50,NA,ENSG00000253496::RP11-13N12.1,163167,163190,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0,0,,-473,-450
+rs3935067,23,4,27,plus,GATGAATGGATCTCAGATTG NGG,NA,NA,,NA,NA,32 8 28 32,100,0,54.2175,NA,ENSG00000146904::EPHA1,16928,16951,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.4,0.0693868466866779,0.2414914832,,-496,-473
+rs485902,23,24,47,minus,GGGCAAGTGCCCCAAGAGGT NGG,NA,NA,,NA,NA,12 44 20 24,100,0,59.13,NA,8,27632420,27632443,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0,0.3565037168,,-476,-453
+rs485902,23,13,36,plus,GACATTGAAAGCCCACCTCT NGG,NA,NA,,NA,NA,24 28 20 28,100,0,55.1023,NA,8,27632431,27632454,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0353555891332848,0.1197619152,,-487,-464
+rs755951,23,14,37,minus,GTCCCCCTACATGCCAGTGA NGG,NA,NA,,NA,NA,16 28 24 32,100,0,59.4649,NA,ENSG00000120899::PTK2B,57780,57803,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.6,0.0660585905284884,0.3071886604,,-486,-463
+rs755951,23,10,33,plus,GATCCCTTCACTGGCATGTA NGG,NA,NA,,NA,NA,16 24 24 36,100,0,53.8968,NA,ENSG00000120899::PTK2B,57776,57799,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.165700283188639,-0.0708577208,,-490,-467
+rs755951,23,9,32,plus,GGATCCCTTCACTGGCATGT NGG,NA,NA,,NA,NA,16 24 24 36,100,0,52.1868,NA,ENSG00000120899::PTK2B,57775,57798,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0343462233905417,0.0749939812,,-491,-468
+rs4732729,23,8,31,plus,GCTTGGGAACAGAATCACCG NGG,NA,NA,,NA,NA,28 20 12 40,100,0,81.6952,NA,ENSG00000120885::CLU,7041,7064,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.6,0.92624870041552,0.558514186,,-492,-469
+rs4732729,23,19,42,plus,GAATCACCGGGGAGTCCCAG NGG,NA,NA,,NA,NA,24 24 8 44,100,0,68.7839,NA,ENSG00000120885::CLU,7052,7075,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.389678189948683,0.3495215912,,-481,-458
+rs4732729,23,6,29,plus,GCGCTTGGGAACAGAATCAC NGG,NA,NA,,NA,NA,24 24 12 40,100,0,56.8735,NA,ENSG00000120885::CLU,7039,7062,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0956763845871986,0.2480034592,,-494,-471
+rs4732729,23,25,48,minus,GTCATCCCCCTGGGACTCCC NGG,NA,NA,,NA,NA,16 24 16 44,100,0,54.7839,NA,ENSG00000120885::CLU,7058,7081,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.8,0,-0.0608021040000001,,-475,-452
+rs4879515,23,6,29,plus,GAGACCTAACATTAAAGGAC NGG,NA,NA,,NA,NA,44 16 12 28,100,0,58.2855,NA,ENSG00000120162::MOB3B,157009,157032,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.5,0.0964009857057933,0.3178746224,,-494,-471
+rs112136718,23,19,42,minus,GTGGACGTGGCCTACCGCTG NGG,NA,NA,,NA,NA,16 40 8 36,100,0,67.1122,NA,ENSG00000261150::EPPK1,10807,10830,MMMMMMMMMMMMMMMMMMMMMMM,0,1,rc,0,0,0.7,0.150319990025795,0.505293164,,-481,-458
+rs112136718,23,9,32,plus,GTCGAAGTAGCCGCAGCGGT NGG,NA,NA,,NA,NA,20 28 12 40,100,0,65.4369,NA,ENSG00000261150::EPPK1,10797,10820,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.173457087379942,0.3983908496,,-491,-468
+rs112136718,23,21,44,plus,GCAGCGGTAGGCCACGTCCA NGG,NA,NA,,NA,NA,16 36 8 40,100,0,62.6598,NA,ENSG00000261150::EPPK1,10809,10832,MMMMMMMMMMMMMMMMMMMMMMM,0,1,fw,0,0,0.7,0.432990147111591,0,,-479,-456

data/GuideScan2/GuideScan2_30bp_NGG-.csv

@@ -0,0 +1,317 @@
+Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+chr1:152220435-152220465,chr1:152220435-152220465.0,GACGTGAGCTGGAGCCATGT,GACGTGAGCTGGAGCCATGT,NGG,18,2:0 | 3:18,0.602148,0.29527,1,NC_000001.11:152220443-152220465,+,hornerin
+chr1:155135675-155135705,chr1:155135675-155135705.0,AGAGGTCTGGACCAGGGTAC,AGAGGTCTGGACCAGGGTAC,NGG,26,2:0 | 3:26,0.361226,0.28323,1,NC_000001.11:155135677-155135699,+,
+chr1:155135675-155135705,chr1:155135675-155135705.1,GAGGTCTGGACCAGGGTACT,GAGGTCTGGACCAGGGTACT,NGG,38,2:1 | 3:37,0.500068,0.188367,2,NC_000001.11:155135678-155135700,+,
+chr1:155135675-155135705,chr1:155135675-155135705.2,TCTGGACCAGGGTACTGGGA,TCTGGACCAGGGTACTGGGA,NGG,53,2:0 | 3:53,0.564113,0.0963628,3,NC_000001.11:155135682-155135704,+,
+chr1:156102410-156102440,chr1:156102410-156102440.0,TGGTTCTGTCACCTCTGGTT,TGGTTCTGTCACCTCTGGTT,NGG,37,2:1 | 3:36,0.425775,0.231612,1,NC_000001.11:156102415-156102437,+,
+chr1:156102410-156102440,chr1:156102410-156102440.1,TAACCAGAGGTGACAGAACC,GGTTCTGTCACCTCTGGTTA,NGG,39,2:0 | 3:39,0.503448,0.196528,2,NC_000001.11:156102413-156102435,-,
+chr1:156102410-156102440,chr1:156102410-156102440.2,AGTCCTGGTTCTGTCACCTC,AGTCCTGGTTCTGTCACCTC,NGG,62,2:3 | 3:59,0.413392,0.181194,3,NC_000001.11:156102410-156102432,+,
+chr10:11676698-11676728,chr10:11676698-11676728.0,GAAGTGCTTACCGCATATCC,GAAGTGCTTACCGCATATCC,NGG,3,2:0 | 3:3,0.5317,0.566244,1,NC_000010.11:11676700-11676722,+,
+chr10:119612800-119612830,chr10:119612800-119612830.0,CAGGCGCCCGCCACCTGTTC,GAACAGGTGGCGGGCGCCTG,NGG,2708,2:53 | 3:2655,0.287138,0.00641668,1,NC_000010.11:119612803-119612825,-,
+chr11:47395616-47395646,chr11:47395616-47395646.0,TCATGGCTATAATAAATCAA,TCATGGCTATAATAAATCAA,NGG,60,2:3 | 3:57,0.513797,0.144882,1,NC_000011.10:47395624-47395646,+,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:60184827-60184857,chr11:60184827-60184857.0,TTCTACCAACCTAACTACAA,TTCTACCAACCTAACTACAA,NGG,15,2:0 | 3:15,0.653775,0.399656,1,NC_000011.10:60184833-60184855,+,
+chr11:60184827-60184857,chr11:60184827-60184857.1,ATTCTACCAACCTAACTACA,ATTCTACCAACCTAACTACA,NGG,30,2:0 | 3:30,0.550719,0.220943,2,NC_000011.10:60184832-60184854,+,
+chr11:86132139-86132169,chr11:86132139-86132169.0,TGACCAGGCCCGGCCGGGCA,TGCCCGGCCGGGCCTGGTCA,NGG,65,2:6 | 3:59,0.526278,0.0755237,1,NC_000011.10:86132147-86132169,-,
+chr11:121564862-121564892,chr11:121564862-121564892.0,TAAAATACTCTATTACCGGC,GCCGGTAATAGAGTATTTTA,NGG,13,2:0 | 3:13,0.47751,0.238824,1,NC_000011.10:121564867-121564889,-,
+chr11:121564862-121564892,chr11:121564862-121564892.1,AAAATACTCTATTACCGGCT,AGCCGGTAATAGAGTATTTT,NGG,31,2:0 | 3:31,0.51914,0.156044,2,NC_000011.10:121564866-121564888,-,
+chr11:133902927-133902957,chr11:133902927-133902957.0,TGGGGTTTTCATATAAGCCA,TGGCTTATATGAAAACCCCA,NGG,25,2:0 | 3:25,0.527661,0.273097,1,NC_000011.10:133902933-133902955,-,immunoglobulin superfamily member 9B
+chr11:133902927-133902957,chr11:133902927-133902957.1,GTTTTCATATAAGCCATGGG,CCCATGGCTTATATGAAAAC,NGG,31,2:0 | 3:31,0.689368,0.279263,2,NC_000011.10:133902929-133902951,-,immunoglobulin superfamily member 9B
+chr11:133902927-133902957,chr11:133902927-133902957.2,GGGGTTTTCATATAAGCCAT,ATGGCTTATATGAAAACCCC,NGG,35,2:2 | 3:33,0.589318,0.213089,3,NC_000011.10:133902932-133902954,-,immunoglobulin superfamily member 9B
+chr11:133902927-133902957,chr11:133902927-133902957.3,TTTCATATAAGCCATGGGAG,CTCCCATGGCTTATATGAAA,NGG,38,2:0 | 3:38,0.537071,0.164118,4,NC_000011.10:133902927-133902949,-,immunoglobulin superfamily member 9B
+chr11:133902927-133902957,chr11:133902927-133902957.4,TTTTCATATAAGCCATGGGA,TCCCATGGCTTATATGAAAA,NGG,48,2:1 | 3:47,0.586167,0.139321,5,NC_000011.10:133902928-133902950,-,immunoglobulin superfamily member 9B
+chr11:133949506-133949536,chr11:133949506-133949536.0,GTTTGGTTTCCCCCTGTATT,AATACAGGGGGAAACCAAAC,NGG,21,2:1 | 3:20,0.19908,0.349993,1,NC_000011.10:133949510-133949532,-,
+chr11:133949506-133949536,chr11:133949506-133949536.1,TTTGGTTTCCCCCTGTATTT,AAATACAGGGGGAAACCAAA,NGG,130,2:1 | 3:129,0.312179,0.0515104,2,NC_000011.10:133949509-133949531,-,
+chr12:40226990-40227020,chr12:40226990-40227020.0,AGTGCTATACTTGACAACCC,AGTGCTATACTTGACAACCC,NGG,9,2:0 | 3:9,0.701704,0.591361,1,NC_000012.12:40226992-40227014,+,
+chr12:40226990-40227020,chr12:40226990-40227020.1,GTGCTATACTTGACAACCCA,GTGCTATACTTGACAACCCA,NGG,14,2:0 | 3:14,0.614097,0.49424,2,NC_000012.12:40226993-40227015,+,
+chr12:40226990-40227020,chr12:40226990-40227020.2,TGCTATACTTGACAACCCAG,TGCTATACTTGACAACCCAG,NGG,14,2:0 | 3:14,0.749446,0.359774,3,NC_000012.12:40226994-40227016,+,
+chr12:40491731-40491761,chr12:40491731-40491761.0,ATTCGTCTTACGATCATAAT,ATTATGATCGTAAGACGAAT,NGG,0,2:0 | 3:0,0.191562,0.995923,1,NC_000012.12:40491736-40491758,-,
+chr12:41036413-41036443,chr12:41036413-41036443.0,TTAGAGAACCAAGCCAAATG,TTAGAGAACCAAGCCAAATG,NGG,107,2:5 | 3:102,0.601051,0.0924406,1,NC_000012.12:41036416-41036438,+,
+chr12:41195597-41195627,chr12:41195597-41195627.0,ATAAATCAAAGTTTTTTTTT,AAAAAAAAACTTTGATTTAT,NGG,551,2:35 | 3:516,0.124,0.0157566,1,NC_000012.12:41195603-41195625,-,
+chr12:56922803-56922833,chr12:56922803-56922833.0,GTGTTAAGTTACTTATTCTA,GTGTTAAGTTACTTATTCTA,NGG,48,2:0 | 3:48,0.29911,0.16097,1,NC_000012.12:56922804-56922826,+,
+chr12:64455920-64455950,chr12:64455920-64455950.0,GCTACTGCAAATGTCTTTCG,GCTACTGCAAATGTCTTTCG,NGG,12,2:0 | 3:12,0.541531,0.413703,1,NC_000012.12:64455925-64455947,+,"TANK binding kinase 1, transcript variant X3"
+chr12:64555452-64555482,chr12:64555452-64555482.0,ATAGAAAGCCTCTACCGGCC,ATAGAAAGCCTCTACCGGCC,NGG,12,2:0 | 3:12,0.613849,0.417137,1,NC_000012.12:64555452-64555474,+,
+chr12:64555452-64555482,chr12:64555452-64555482.1,AAGCCTCTACCGGCCGGGCA,AAGCCTCTACCGGCCGGGCA,NGG,90,2:5 | 3:85,0.566983,0.0518375,2,NC_000012.12:64555457-64555479,+,
+chr14:52845268-52845298,chr14:52845268-52845298.0,CCACGCTTCAGCTCTCTTGC,CCACGCTTCAGCTCTCTTGC,NGG,27,2:0 | 3:27,0.334898,0.162426,1,NC_000014.9:52845271-52845293,+,
+chr14:52845268-52845298,chr14:52845268-52845298.1,CAGCAAGAGAGCTGAAGCGT,ACGCTTCAGCTCTCTTGCTG,NGG,31,2:1 | 3:30,0.623894,0.188239,2,NC_000014.9:52845270-52845292,-,
+chr14:52845268-52845298,chr14:52845268-52845298.2,CCAGCAAGAGAGCTGAAGCG,CGCTTCAGCTCTCTTGCTGG,NGG,36,2:2 | 3:34,0.612947,0.175732,3,NC_000014.9:52845271-52845293,-,
+chr14:52951105-52951135,chr14:52951105-52951135.0,CCCCTCTGTCCGAGCCTGGC,CCCCTCTGTCCGAGCCTGGC,NGG,25,2:0 | 3:25,0.275128,0.241697,1,NC_000014.9:52951107-52951129,+,
+chr14:52951105-52951135,chr14:52951105-52951135.1,CCAGCCAGGCTCGGACAGAG,CTCTGTCCGAGCCTGGCTGG,NGG,36,2:0 | 3:36,0.635084,0.201945,2,NC_000014.9:52951107-52951129,-,
+chr14:52951105-52951135,chr14:52951105-52951135.2,TGTCCGAGCCTGGCTGGGCT,TGTCCGAGCCTGGCTGGGCT,NGG,51,2:0 | 3:51,0.356169,0.133692,3,NC_000014.9:52951113-52951135,+,
+chr14:52951105-52951135,chr14:52951105-52951135.3,CTGTCCGAGCCTGGCTGGGC,CTGTCCGAGCCTGGCTGGGC,NGG,56,2:2 | 3:54,0.213404,0.0788235,4,NC_000014.9:52951112-52951134,+,
+chr15:50529045-50529075,chr15:50529045-50529075.0,CTCCATGCTTTCTTTCCTTC,CTCCATGCTTTCTTTCCTTC,NGG,164,2:15 | 3:149,0.279124,0.0512295,1,NC_000015.10:50529046-50529068,+,
+chr15:63277687-63277717,chr15:63277687-63277717.0,ACGCAACGGCTCGGTGGCGA,TCGCCACCGAGCCGTTGCGT,NGG,1,2:0 | 3:1,0.491463,0.50564,1,NC_000015.10:63277694-63277716,-,"aph-1 homolog B, gamma-secretase subunit, transcript variant X1"
+chr16:30926462-30926492,chr16:30926462-30926492.0,AGTAGGGATCGGGGAAGCAT,AGTAGGGATCGGGGAAGCAT,NGG,22,2:3 | 3:19,0.524281,0.228575,1,NC_000016.10:30926468-30926490,+,
+chr16:30926462-30926492,chr16:30926462-30926492.1,CAGTAGGGATCGGGGAAGCA,CAGTAGGGATCGGGGAAGCA,NGG,34,2:1 | 3:33,0.475818,0.17063,2,NC_000016.10:30926467-30926489,+,
+chr17:1771637-1771667,chr17:1771637-1771667.0,CAGGAGACGGTGGGAGGGGC,CAGGAGACGGTGGGAGGGGC,NGG,148,2:6 | 3:142,0.323014,0.0361961,1,NC_000017.11:1771639-1771661,+,
+chr17:1771637-1771667,chr17:1771637-1771667.1,AGGAGACGGTGGGAGGGGCA,AGGAGACGGTGGGAGGGGCA,NGG,180,2:12 | 3:168,0.517869,0.0335897,2,NC_000017.11:1771640-1771662,+,
+chr17:1771637-1771667,chr17:1771637-1771667.2,AGACGGTGGGAGGGGCAGGG,AGACGGTGGGAGGGGCAGGG,NGG,344,2:21 | 3:323,0.47525,0.0181051,3,NC_000017.11:1771643-1771665,+,
+chr17:1771637-1771667,chr17:1771637-1771667.3,GACGGTGGGAGGGGCAGGGA,GACGGTGGGAGGGGCAGGGA,NGG,520,2:35 | 3:485,0.424246,0.0128358,4,NC_000017.11:1771644-1771666,+,
+chr19:1032674-1032704,chr19:1032674-1032704.0,TCGCCCTGGCGGGGAAGGTG,TCGCCCTGGCGGGGAAGGTG,NGG,35,2:4 | 3:31,0.505068,0.165802,1,NC_000019.10:1032680-1032702,+,"calponin 2, transcript variant 4"
+chr19:1042794-1042824,chr19:1042794-1042824.0,GGCCGCTGAGGACCTGGCCC,GGCCGCTGAGGACCTGGCCC,NGG,65,2:1 | 3:64,0.479399,0.076691,1,NC_000019.10:1042802-1042824,+,"ATP binding cassette subfamily A member 7, transcript variant X11"
+chr19:44516782-44516812,chr19:44516782-44516812.0,TGTTGAATCCCAACCCCTAG,CTAGGGGTTGGGATTCAACA,NGG,13,2:0 | 3:13,0.63367,0.405722,1,NC_000019.10:44516786-44516808,-,
+chr19:44544847-44544877,chr19:44544847-44544877.0,GATCACCCTGGGTGTAATGC,GCATTACACCCAGGGTGATC,NGG,6,2:0 | 3:6,0.515971,0.650778,1,NC_000019.10:44544848-44544870,-,
+chr19:44658282-44658312,chr19:44658282-44658312.0,GGGCTCCAACCTTGTAACCC,GGGCTCCAACCTTGTAACCC,NGG,22,2:0 | 3:22,0.638003,0.356184,1,NC_000019.10:44658287-44658309,+,
+chr19:44658282-44658312,chr19:44658282-44658312.1,GGTTACAAGGTTGGAGCCCC,GGGGCTCCAACCTTGTAACC,NGG,28,2:0 | 3:28,0.364217,0.298059,2,NC_000019.10:44658283-44658305,-,
+chr19:44658905-44658935,chr19:44658905-44658935.0,GTGCTCAATTACGGCAGCTC,GAGCTGCCGTAATTGAGCAC,NGG,12,2:0 | 3:12,0.451213,0.506361,1,NC_000019.10:44658911-44658933,-,
+chr19:44663668-44663698,chr19:44663668-44663698.0,AAGCAAGACGCTAAATGAAG,AAGCAAGACGCTAAATGAAG,NGG,34,2:0 | 3:34,0.614684,0.133602,1,NC_000019.10:44663676-44663698,+,"PVR cell adhesion molecule, transcript variant 1"
+chr19:44684014-44684044,chr19:44684014-44684044.0,GGGAAGGGGTCCAGCAGCCG,CGGCTGCTGGACCCCTTCCC,NGG,56,2:0 | 3:56,0.564831,0.0727178,1,NC_000019.10:44684020-44684042,-,"CEA cell adhesion molecule 19, transcript variant 3"
+chr19:44697240-44697270,chr19:44697240-44697270.0,GCTCTGAGGCAGGCCCGGCA,GCTCTGAGGCAGGCCCGGCA,NGG,66,2:9 | 3:57,0.567964,0.108176,1,NC_000019.10:44697240-44697262,+,
+chr19:44698766-44698796,chr19:44698766-44698796.0,TCTTATGACCTGCATCCTGA,TCAGGATGCAGGTCATAAGA,NGG,39,2:3 | 3:36,0.536574,0.212502,1,NC_000019.10:44698766-44698788,-,
+chr19:44723875-44723905,chr19:44723875-44723905.0,TTCACCCTGCATGTGGCAGC,GCTGCCACATGCAGGGTGAA,NGG,36,2:1 | 3:35,0.286124,0.185404,1,NC_000019.10:44723880-44723902,-,
+chr19:44723875-44723905,chr19:44723875-44723905.1,ACCCTGCATGTGGCAGCTGG,CCAGCTGCCACATGCAGGGT,NGG,39,2:5 | 3:34,0.5102,0.154711,2,NC_000019.10:44723877-44723899,-,
+chr19:44723875-44723905,chr19:44723875-44723905.2,TCACCCTGCATGTGGCAGCT,AGCTGCCACATGCAGGGTGA,NGG,40,2:1 | 3:39,0.419078,0.200219,3,NC_000019.10:44723879-44723901,-,
+chr19:44723875-44723905,chr19:44723875-44723905.3,GCTGCCACATGCAGGGTGAA,GCTGCCACATGCAGGGTGAA,NGG,50,2:4 | 3:46,0.474436,0.10863,4,NC_000019.10:44723883-44723905,+,
+chr19:44723875-44723905,chr19:44723875-44723905.4,CACCCTGCATGTGGCAGCTG,CAGCTGCCACATGCAGGGTG,NGG,53,2:2 | 3:51,0.407736,0.127428,5,NC_000019.10:44723878-44723900,-,
+chr19:44723875-44723905,chr19:44723875-44723905.5,CTCCCCCAGCTGCCACATGC,CTCCCCCAGCTGCCACATGC,NGG,59,2:2 | 3:57,0.449521,0.153312,6,NC_000019.10:44723875-44723897,+,
+chr19:44723875-44723905,chr19:44723875-44723905.6,TCCCCCAGCTGCCACATGCA,TCCCCCAGCTGCCACATGCA,NGG,61,2:5 | 3:56,0.542966,0.183254,7,NC_000019.10:44723876-44723898,+,
+chr19:44737976-44738005,chr19:44737976-44738005.0,GGCACCGACTTCCAGGGAAA,GGCACCGACTTCCAGGGAAA,NGG,13,2:1 | 3:12,0.491937,0.309946,1,NC_000019.10:44737979-44738001,+,
+chr19:44737976-44738005,chr19:44737976-44738005.1,CCGACTTCCAGGGAAAAGGC,CCGACTTCCAGGGAAAAGGC,NGG,27,2:1 | 3:26,0.578558,0.181108,2,NC_000019.10:44737983-44738005,+,
+chr19:44737976-44738005,chr19:44737976-44738005.2,CCAGCCTTTTCCCTGGAAGT,ACTTCCAGGGAAAAGGCTGG,NGG,58,2:2 | 3:56,0.569512,0.0979795,3,NC_000019.10:44737983-44738005,-,
+chr19:44746388-44746418,chr19:44746388-44746418.0,GGGTGGAGGCGAGGTTTGGA,TCCAAACCTCGCCTCCACCC,NGG,75,2:4 | 3:71,0.541726,0.0794209,1,NC_000019.10:44746392-44746414,-,
+chr19:44746388-44746418,chr19:44746388-44746418.1,CTGAGGGTGGAGGCGAGGTT,AACCTCGCCTCCACCCTCAG,NGG,81,2:6 | 3:75,0.328527,0.142043,2,NC_000019.10:44746396-44746418,-,
+chr19:44746388-44746418,chr19:44746388-44746418.2,AGGGTGGAGGCGAGGTTTGG,CCAAACCTCGCCTCCACCCT,NGG,125,2:2 | 3:123,0.469364,0.0869157,3,NC_000019.10:44746393-44746415,-,
+chr19:44747883-44747913,chr19:44747883-44747913.0,TGTGTCTCTGCACTCGTTGG,CCAACGAGTGCAGAGACACA,NGG,13,2:1 | 3:12,0.608654,0.468392,1,NC_000019.10:44747890-44747912,-,"BCL3 transcription coactivator, transcript variant X2"
+chr19:44747883-44747913,chr19:44747883-44747913.1,TTGTGTCTCTGCACTCGTTG,CAACGAGTGCAGAGACACAA,NGG,14,2:0 | 3:14,0.560381,0.587901,2,NC_000019.10:44747891-44747913,-,"BCL3 transcription coactivator, transcript variant X2"
+chr19:44750218-44750248,chr19:44750218-44750248.0,AGTTTTCCCCGTCTGTGTGA,AGTTTTCCCCGTCTGTGTGA,NGG,26,2:0 | 3:26,0.417625,0.140488,1,NC_000019.10:44750225-44750247,+,
+chr19:44750218-44750248,chr19:44750218-44750248.1,GTTTTCCCCGTCTGTGTGAT,GTTTTCCCCGTCTGTGTGAT,NGG,29,2:2 | 3:27,0.487454,0.0978013,2,NC_000019.10:44750226-44750248,+,
+chr19:44750218-44750248,chr19:44750218-44750248.2,CACACAGACGGGGAAAACTG,CAGTTTTCCCCGTCTGTGTG,NGG,44,2:1 | 3:43,0.707197,0.0905963,3,NC_000019.10:44750221-44750243,-,
+chr19:44751993-44752023,chr19:44751993-44752023.0,TGTAAAACTATCACTGGACC,TGTAAAACTATCACTGGACC,NGG,27,2:3 | 3:24,0.581488,0.269655,1,NC_000019.10:44752001-44752023,+,
+chr19:44751993-44752023,chr19:44751993-44752023.1,TATACATGTAAAACTATCAC,TATACATGTAAAACTATCAC,NGG,65,2:3 | 3:62,0.480384,0.127407,2,NC_000019.10:44751995-44752017,+,
+chr19:44770799-44770829,chr19:44770799-44770829.0,AACTCCGTTCCCAAGGGAGG,AACTCCGTTCCCAAGGGAGG,NGG,18,2:0 | 3:18,0.553652,0.252979,1,NC_000019.10:44770804-44770826,+,
+chr19:44770799-44770829,chr19:44770799-44770829.1,AGAAACTCCGTTCCCAAGGG,AGAAACTCCGTTCCCAAGGG,NGG,38,2:0 | 3:38,0.613232,0.13982,2,NC_000019.10:44770801-44770823,+,
+chr19:44819471-44819501,chr19:44819471-44819501.0,GTCACTCACCGGTGCCGAAG,CTTCGGCACCGGTGAGTGAC,NGG,0,2:0 | 3:0,0.535063,0.980286,1,NC_000019.10:44819477-44819499,-,"basal cell adhesion molecule (Lutheran blood group), transcript variant 2"
+chr19:44820865-44820895,chr19:44820865-44820895.0,TGGAGCACGCCCGTGGGCAC,TGGAGCACGCCCGTGGGCAC,NGG,15,2:0 | 3:15,0.441348,0.455071,1,NC_000019.10:44820869-44820891,+,
+chr19:44839542-44839572,chr19:44839542-44839572.0,ACCAACTTCTCTTTACTTCC,GGAAGTAAAGAGAAGTTGGT,NGG,54,2:5 | 3:49,0.323236,0.0947512,1,NC_000019.10:44839544-44839566,-,
+chr19:44839542-44839572,chr19:44839542-44839572.1,TCCAGGAAGTAAAGAGAAGT,TCCAGGAAGTAAAGAGAAGT,NGG,111,2:14 | 3:97,0.495597,0.0805701,2,NC_000019.10:44839543-44839565,+,
+chr19:44840306-44840336,chr19:44840306-44840336.0,ATAAAACTGCGAACATAGCC,ATAAAACTGCGAACATAGCC,NGG,31,2:0 | 3:31,0.503524,0.236068,1,NC_000019.10:44840312-44840334,+,
+chr19:44848243-44848273,chr19:44848243-44848273.0,CCAAGCTAACAGTAGGCTCA,TGAGCCTACTGTTAGCTTGG,NGG,14,2:0 | 3:14,0.637052,0.301555,1,NC_000019.10:44848251-44848273,-,
+chr19:44848243-44848273,chr19:44848243-44848273.1,CTAACAGTAGGCTCAGGGTC,GACCCTGAGCCTACTGTTAG,NGG,15,2:0 | 3:15,0.543546,0.337077,2,NC_000019.10:44848246-44848268,-,
+chr19:44848243-44848273,chr19:44848243-44848273.2,CCCTGAGCCTACTGTTAGCT,CCCTGAGCCTACTGTTAGCT,NGG,26,2:1 | 3:25,0.425106,0.238931,3,NC_000019.10:44848251-44848273,+,
+chr19:44848243-44848273,chr19:44848243-44848273.3,ACAGTAGGCTCAGGGTCTGG,CCAGACCCTGAGCCTACTGT,NGG,42,2:5 | 3:37,0.4847,0.116756,4,NC_000019.10:44848243-44848265,-,
+chr19:44849146-44849176,chr19:44849146-44849176.0,GTCAGAGACACGTGTAGGAA,GTCAGAGACACGTGTAGGAA,NGG,18,2:0 | 3:18,0.523989,0.49982,1,NC_000019.10:44849149-44849171,+,
+chr19:44858373-44858403,chr19:44858373-44858403.0,CCAACATGGGCGATAGAATG,CATTCTATCGCCCATGTTGG,NGG,118,2:1 | 3:117,0.573555,0.0785796,1,NC_000019.10:44858373-44858395,-,
+chr19:44858373-44858403,chr19:44858373-44858403.1,CCTCATTCTATCGCCCATGT,CCTCATTCTATCGCCCATGT,NGG,299,2:11 | 3:288,0.558139,0.0215786,2,NC_000019.10:44858373-44858395,+,
+chr19:44860427-44860457,chr19:44860427-44860457.0,CTCACTGCAAACCGTCTCTG,CAGAGACGGTTTGCAGTGAG,NGG,31,2:0 | 3:31,0.644271,0.299969,1,NC_000019.10:44860435-44860457,-,
+chr19:44867668-44867698,chr19:44867668-44867698.0,ATGGGAGCTGGGCGCGTTCC,ATGGGAGCTGGGCGCGTTCC,NGG,10,2:0 | 3:10,0.317384,0.38124,1,NC_000019.10:44867670-44867692,+,
+chr19:44867668-44867698,chr19:44867668-44867698.1,AGCTGGGCGCGTTCCAGGAA,AGCTGGGCGCGTTCCAGGAA,NGG,31,2:0 | 3:31,0.456304,0.222805,2,NC_000019.10:44867675-44867697,+,
+chr19:44867915-44867945,chr19:44867915-44867945.0,TAGAAGGGAGCTGGGACGAG,TAGAAGGGAGCTGGGACGAG,NGG,51,2:0 | 3:51,0.44217,0.209815,1,NC_000019.10:44867915-44867937,+,
+chr19:44867915-44867945,chr19:44867915-44867945.1,AGAAGGGAGCTGGGACGAGA,AGAAGGGAGCTGGGACGAGA,NGG,101,2:6 | 3:95,0.475561,0.0581701,2,NC_000019.10:44867916-44867938,+,
+chr19:44867915-44867945,chr19:44867915-44867945.2,GAAGGGAGCTGGGACGAGAG,GAAGGGAGCTGGGACGAGAG,NGG,118,2:6 | 3:112,0.573264,0.10264,3,NC_000019.10:44867917-44867939,+,
+chr19:44872140-44872170,chr19:44872140-44872170.0,CTGTACGCTGTGAGTGTATC,CTGTACGCTGTGAGTGTATC,NGG,0,2:0 | 3:0,0.304099,1,1,NC_000019.10:44872141-44872163,+,
+chr19:44872140-44872170,chr19:44872140-44872170.1,TGTACGCTGTGAGTGTATCG,TGTACGCTGTGAGTGTATCG,NGG,2,2:0 | 3:2,0.596905,0.843431,2,NC_000019.10:44872142-44872164,+,
+chr19:44872140-44872170,chr19:44872140-44872170.2,GTACGCTGTGAGTGTATCGG,GTACGCTGTGAGTGTATCGG,NGG,2,2:0 | 3:2,0.679598,0.812772,3,NC_000019.10:44872143-44872165,+,
+chr19:44872140-44872170,chr19:44872140-44872170.3,TCTGTACGCTGTGAGTGTAT,TCTGTACGCTGTGAGTGTAT,NGG,8,2:0 | 3:8,0.430075,0.374311,4,NC_000019.10:44872140-44872162,+,
+chr19:44874871-44874901,chr19:44874871-44874901.0,TCCTCTTTGGCTCCGTGCCT,AGGCACGGAGCCAAAGAGGA,NGG,13,2:2 | 3:11,0.281656,0.308599,1,NC_000019.10:44874879-44874901,-,
+chr19:44874871-44874901,chr19:44874871-44874901.1,CTCTTTGGCTCCGTGCCTTG,CAAGGCACGGAGCCAAAGAG,NGG,17,2:0 | 3:17,0.504325,0.25066,2,NC_000019.10:44874877-44874899,-,
+chr19:44874871-44874901,chr19:44874871-44874901.2,TTGGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCCAA,NGG,26,2:0 | 3:26,0.39674,0.256884,3,NC_000019.10:44874873-44874895,-,
+chr19:44874871-44874901,chr19:44874871-44874901.3,CCCAAGGCACGGAGCCAAAG,CCCAAGGCACGGAGCCAAAG,NGG,28,2:0 | 3:28,0.527442,0.185455,4,NC_000019.10:44874878-44874900,+,
+chr19:44874871-44874901,chr19:44874871-44874901.4,CCTCTTTGGCTCCGTGCCTT,AAGGCACGGAGCCAAAGAGG,NGG,38,2:0 | 3:38,0.255401,0.224494,5,NC_000019.10:44874878-44874900,-,
+chr19:44875787-44875817,chr19:44875787-44875817.0,GGGAAAACAGACACCTCTTC,GGGAAAACAGACACCTCTTC,NGG,73,2:3 | 3:70,0.401742,0.144003,1,NC_000019.10:44875791-44875813,+,
+chr19:44875787-44875817,chr19:44875787-44875817.1,AAGAGGTGTCTGTTTTCCCT,AGGGAAAACAGACACCTCTT,NGG,74,2:5 | 3:69,0.429642,0.0923168,2,NC_000019.10:44875787-44875809,-,
+chr19:44879402-44879432,chr19:44879402-44879432.0,GTTGCTGGGGGTCTCGGGAG,GTTGCTGGGGGTCTCGGGAG,NGG,32,2:0 | 3:32,0.341265,0.265947,1,NC_000019.10:44879403-44879425,+,
+chr19:44879402-44879432,chr19:44879402-44879432.1,GGTTGCTGGGGGTCTCGGGA,GGTTGCTGGGGGTCTCGGGA,NGG,48,2:0 | 3:48,0.468292,0.136766,2,NC_000019.10:44879402-44879424,+,
+chr19:44879402-44879432,chr19:44879402-44879432.2,GCTGGGGGTCTCGGGAGGGG,GCTGGGGGTCTCGGGAGGGG,NGG,175,2:8 | 3:167,0.347365,0.0425738,3,NC_000019.10:44879406-44879428,+,
+chr19:44879402-44879432,chr19:44879402-44879432.3,CTGGGGGTCTCGGGAGGGGA,CTGGGGGTCTCGGGAGGGGA,NGG,198,2:12 | 3:186,0.438563,0.0371564,4,NC_000019.10:44879407-44879429,+,
+chr19:44879764-44879794,chr19:44879764-44879794.0,GGCTGTCGTGGGACCCAGTA,GGCTGTCGTGGGACCCAGTA,NGG,39,2:3 | 3:36,0.484192,0.20077,1,NC_000019.10:44879768-44879790,+,
+chr19:44882083-44882113,chr19:44882083-44882113.0,ATGTCCCCTGCCCATGGGAG,ATGTCCCCTGCCCATGGGAG,NGG,49,2:2 | 3:47,0.519807,0.108391,1,NC_000019.10:44882087-44882109,+,
+chr19:44882083-44882113,chr19:44882083-44882113.1,ATGTCCTCTCCCATGGGCAG,CTGCCCATGGGAGAGGACAT,NGG,49,2:3 | 3:46,0.502604,0.11867,2,NC_000019.10:44882091-44882113,-,
+chr19:44890938-44890968,chr19:44890938-44890968.0,GGGCGATGCCTCAGCGGGCG,GGGCGATGCCTCAGCGGGCG,NGG,9,2:0 | 3:9,0.364181,0.692746,1,NC_000019.10:44890945-44890967,+,
+chr19:44890938-44890968,chr19:44890938-44890968.1,GAGGCGGGGCGATGCCTCAG,GAGGCGGGGCGATGCCTCAG,NGG,20,2:1 | 3:19,0.64435,0.301062,2,NC_000019.10:44890939-44890961,+,
+chr19:44890938-44890968,chr19:44890938-44890968.2,AGGCGGGGCGATGCCTCAGC,AGGCGGGGCGATGCCTCAGC,NGG,23,2:0 | 3:23,0.509674,0.222511,3,NC_000019.10:44890940-44890962,+,
+chr19:44893392-44893422,chr19:44893392-44893422.0,TCAGTCCCCCCAACCCTGTC,GACAGGGTTGGGGGGACTGA,NGG,38,2:1 | 3:37,0.246353,0.150015,1,NC_000019.10:44893399-44893421,-,
+chr19:44893392-44893422,chr19:44893392-44893422.1,CAGTCCCCCCAACCCTGTCT,AGACAGGGTTGGGGGGACTG,NGG,39,2:1 | 3:38,0.421315,0.183028,2,NC_000019.10:44893398-44893420,-,
+chr19:44893392-44893422,chr19:44893392-44893422.2,TGGAGGCCCAGACAGGGTTG,TGGAGGCCCAGACAGGGTTG,NGG,87,2:6 | 3:81,0.423803,0.0651253,3,NC_000019.10:44893392-44893414,+,
+chr19:44899445-44899475,chr19:44899445-44899475.0,ACGTCCACCCCCTTAGTACC,ACGTCCACCCCCTTAGTACC,NGG,11,2:0 | 3:11,0.39942,0.736382,1,NC_000019.10:44899446-44899468,+,
+chr19:44899445-44899475,chr19:44899445-44899475.1,CGTCCACCCCCTTAGTACCT,CGTCCACCCCCTTAGTACCT,NGG,21,2:0 | 3:21,0.556629,0.298302,2,NC_000019.10:44899447-44899469,+,
+chr19:44899445-44899475,chr19:44899445-44899475.2,AGTCCCAGGTACTAAGGGGG,CCCCCTTAGTACCTGGGACT,NGG,1329,2:54 | 3:1275,0.615408,0.0116601,3,NC_000019.10:44899450-44899472,-,
+chr19:44901159-44901189,chr19:44901159-44901189.0,AATTAGCAAGTGGCCCCACC,GGTGGGGCCACTTGCTAATT,NGG,13,2:0 | 3:13,0.515832,0.450512,1,NC_000019.10:44901159-44901181,-,
+chr19:44901789-44901819,chr19:44901789-44901819.0,GTAGGTAGAGCAGCCAGGCG,GTAGGTAGAGCAGCCAGGCG,NGG,18,2:0 | 3:18,0.584331,0.233128,1,NC_000019.10:44901794-44901816,+,
+chr19:44901789-44901819,chr19:44901789-44901819.1,AAAAAGTAGGTAGAGCAGCC,AAAAAGTAGGTAGAGCAGCC,NGG,48,2:4 | 3:44,0.529511,0.0933511,2,NC_000019.10:44901789-44901811,+,
+chr19:44908668-44908698,chr19:44908668-44908698.0,GGAGGACGTGTGCGGCCGCC,GGAGGACGTGTGCGGCCGCC,NGG,19,2:0 | 3:19,0.415328,0.404294,1,NC_000019.10:44908674-44908696,+,"apolipoprotein E, transcript variant 1"
+chr19:44908806-44908836,chr19:44908806-44908836.0,CGATGACCTGCAGAAGCGCC,CGATGACCTGCAGAAGCGCC,NGG,8,2:0 | 3:8,0.46055,0.388152,1,NC_000019.10:44908806-44908828,+,"apolipoprotein E, transcript variant 1"
+chr19:44908806-44908836,chr19:44908806-44908836.1,ACACTGCCAGGCGCTTCTGC,GCAGAAGCGCCTGGCAGTGT,NGG,21,2:0 | 3:21,0.478205,0.211465,2,NC_000019.10:44908812-44908834,-,"apolipoprotein E, transcript variant 1"
+chr19:44912826-44912856,chr19:44912826-44912856.0,TATGCTATTCTTGTGGGGTC,TATGCTATTCTTGTGGGGTC,NGG,20,2:1 | 3:19,0.320912,0.394312,1,NC_000019.10:44912827-44912849,+,
+chr19:44912826-44912856,chr19:44912826-44912856.1,ATGCTATTCTTGTGGGGTCT,ATGCTATTCTTGTGGGGTCT,NGG,21,2:0 | 3:21,0.388747,0.209107,2,NC_000019.10:44912828-44912850,+,
+chr19:44915213-44915243,chr19:44915213-44915243.0,TAAGCTGGGTGGGGGGCTCT,TAAGCTGGGTGGGGGGCTCT,NGG,45,2:3 | 3:42,0.341943,0.103398,1,NC_000019.10:44915219-44915241,+,
+chr19:44915213-44915243,chr19:44915213-44915243.1,GTAAGCTGGGTGGGGGGCTC,GTAAGCTGGGTGGGGGGCTC,NGG,50,2:4 | 3:46,0.123898,0.0916766,2,NC_000019.10:44915218-44915240,+,
+chr19:44919288-44919318,chr19:44919288-44919318.0,TGCTGAGGACTCCCTCCATG,TGCTGAGGACTCCCTCCATG,NGG,49,2:2 | 3:47,0.617726,0.157479,1,NC_000019.10:44919290-44919312,+,"apolipoprotein C1, transcript variant 3"
+chr19:44924506-44924536,chr19:44924506-44924536.0,CCAAGGGGTCGAGTGGATGT,ACATCCACTCGACCCCTTGG,NGG,9,2:0 | 3:9,0.569147,0.44146,1,NC_000019.10:44924510-44924532,-,
+chr19:44924506-44924536,chr19:44924506-44924536.1,CCAACATCCACTCGACCCCT,CCAACATCCACTCGACCCCT,NGG,10,2:0 | 3:10,0.514857,0.69704,2,NC_000019.10:44924510-44924532,+,
+chr19:44924506-44924536,chr19:44924506-44924536.2,AGGGGTCGAGTGGATGTTGG,CCAACATCCACTCGACCCCT,NGG,24,2:0 | 3:24,0.547222,0.213829,3,NC_000019.10:44924507-44924529,-,
+chr19:44953559-44953589,chr19:44953559-44953589.0,TGAGTGACTTACCTCTCTGA,TCAGAGAGGTAAGTCACTCA,NGG,16,2:0 | 3:16,0.628362,0.343641,1,NC_000019.10:44953560-44953582,-,
+chr19:44953559-44953589,chr19:44953559-44953589.1,GTGAGTGACTTACCTCTCTG,CAGAGAGGTAAGTCACTCAC,NGG,40,2:0 | 3:40,0.619924,0.20166,2,NC_000019.10:44953561-44953583,-,
+chr19:44955190-44955220,chr19:44955190-44955220.0,GGCTGGGAGAAAGACGAGTA,GGCTGGGAGAAAGACGAGTA,NGG,36,2:5 | 3:31,0.631667,0.276153,1,NC_000019.10:44955196-44955218,+,
+chr19:44957734-44957764,chr19:44957734-44957764.0,TAAAGCAGCAGACTGTGCAG,CTGCACAGTCTGCTGCTTTA,NGG,58,2:3 | 3:55,0.599585,0.115607,1,NC_000019.10:44957741-44957763,-,
+chr19:44957734-44957764,chr19:44957734-44957764.1,AAAGCAGCAGACTGTGCAGA,TCTGCACAGTCTGCTGCTTT,NGG,69,2:4 | 3:65,0.5808,0.0835503,2,NC_000019.10:44957740-44957762,-,
+chr19:44973231-44973261,chr19:44973231-44973261.0,ACTTGGGAGGTGATGGGGTG,ACTTGGGAGGTGATGGGGTG,NGG,140,2:9 | 3:131,0.375274,0.0518958,1,NC_000019.10:44973234-44973256,+,
+chr19:44973231-44973261,chr19:44973231-44973261.1,GGGAGGTGATGGGGTGTGGA,GGGAGGTGATGGGGTGTGGA,NGG,338,2:18 | 3:320,0.348124,0.0250307,2,NC_000019.10:44973238-44973260,+,
+chr19:44975079-44975109,chr19:44975079-44975109.0,CTCTCATGCGATGTGGCCTT,AAGGCCACATCGCATGAGAG,NGG,16,2:0 | 3:16,0.408604,0.255234,1,NC_000019.10:44975079-44975101,-,
+chr19:44975079-44975109,chr19:44975079-44975109.1,TCTGAATCTCTCATGCGATG,CATCGCATGAGAGATTCAGA,NGG,19,2:0 | 3:19,0.657333,0.267407,2,NC_000019.10:44975086-44975108,-,
+chr19:44975079-44975109,chr19:44975079-44975109.2,TCTCTCATGCGATGTGGCCT,AGGCCACATCGCATGAGAGA,NGG,21,2:0 | 3:21,0.331851,0.291061,3,NC_000019.10:44975080-44975102,-,
+chr19:45001253-45001283,chr19:45001253-45001283.0,GCGCTCAGGAGGGGTTGGGC,GCCCAACCCCTCCTGAGCGC,NGG,42,2:2 | 3:40,0.447396,0.15924,1,NC_000019.10:45001260-45001282,-,
+chr19:45013440-45013469,chr19:45013440-45013469.0,CTCTTTGGTGTCTGTTAATC,CTCTTTGGTGTCTGTTAATC,NGG,94,2:4 | 3:90,0.2469,0.0897025,1,NC_000019.10:45013440-45013462,+,
+chr19:45019458-45019488,chr19:45019458-45019488.0,TAATGAGATTGTAGCTACAG,CTGTAGCTACAATCTCATTA,NGG,40,2:0 | 3:40,0.633877,0.145985,1,NC_000019.10:45019462-45019484,-,
+chr19:45029417-45029447,chr19:45029417-45029447.0,AAAAAGACAGCTGGTCACCG,AAAAAGACAGCTGGTCACCG,NGG,129,2:12 | 3:117,0.701495,0.162461,1,NC_000019.10:45029423-45029445,+,
+chr19:45045861-45045891,chr19:45045861-45045891.0,CTCTGCACCATCCCTCCACC,GGTGGAGGGATGGTGCAGAG,NGG,62,2:4 | 3:58,0.423437,0.135138,1,NC_000019.10:45045866-45045888,-,
+chr19:45045861-45045891,chr19:45045861-45045891.1,CAGGTGGAGGGATGGTGCAG,CAGGTGGAGGGATGGTGCAG,NGG,115,2:4 | 3:111,0.615373,0.0469067,2,NC_000019.10:45045867-45045889,+,
+chr19:45102034-45102064,chr19:45102034-45102064.0,AGCGTGTCCTTGGCCTGCTT,AGCGTGTCCTTGGCCTGCTT,NGG,15,2:3 | 3:12,0.39335,0.237408,1,NC_000019.10:45102036-45102058,+,
+chr19:45102034-45102064,chr19:45102034-45102064.1,CAAGCAGGCCAAGGACACGC,GCGTGTCCTTGGCCTGCTTG,NGG,30,2:1 | 3:29,0.602648,0.198836,2,NC_000019.10:45102034-45102056,-,
+chr19:45102034-45102064,chr19:45102034-45102064.2,CAGCGTGTCCTTGGCCTGCT,CAGCGTGTCCTTGGCCTGCT,NGG,32,2:1 | 3:31,0.269876,0.111736,3,NC_000019.10:45102035-45102057,+,
+chr19:45125830-45125860,chr19:45125830-45125860.0,GGAAGAGAAGTGGGCCATTC,GGAAGAGAAGTGGGCCATTC,NGG,34,2:1 | 3:33,0.29986,0.234551,1,NC_000019.10:45125830-45125852,+,
+chr19:45131580-45131610,chr19:45131580-45131610.0,ATTGTGCATGGAAAGTACTT,ATTGTGCATGGAAAGTACTT,NGG,48,2:1 | 3:47,0.544778,0.139185,1,NC_000019.10:45131583-45131605,+,
+chr19:45135558-45135588,chr19:45135558-45135588.0,GCTCCAGAGCTCCTGAGCCA,GCTCCAGAGCTCCTGAGCCA,NGG,74,2:0 | 3:74,0.470995,0.146014,1,NC_000019.10:45135563-45135585,+,
+chr19:45135558-45135588,chr19:45135558-45135588.1,AGCCCCTGGCTCAGGAGCTC,GAGCTCCTGAGCCAGGGGCT,NGG,84,2:5 | 3:79,0.32921,0.0962829,2,NC_000019.10:45135566-45135588,-,
+chr19:45135558-45135588,chr19:45135558-45135588.2,CTCCAGAGCTCCTGAGCCAG,CTCCAGAGCTCCTGAGCCAG,NGG,151,2:11 | 3:140,0.506965,0.0562859,3,NC_000019.10:45135564-45135586,+,
+chr19:45144946-45144976,chr19:45144946-45144976.0,CAGCGTGCTGCGCCTCGGGC,CAGCGTGCTGCGCCTCGGGC,NGG,8,2:0 | 3:8,0.333768,0.545082,1,NC_000019.10:45144949-45144971,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45144946-45144976,chr19:45144946-45144976.1,GCCCGAGGCGCAGCACGCTG,CAGCGTGCTGCGCCTCGGGC,NGG,15,2:0 | 3:15,0.535146,0.42583,2,NC_000019.10:45144946-45144968,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146564-45146594,chr19:45146564-45146594.0,CCGACCGGAAAAAGGGAACT,AGTTCCCTTTTTCCGGTCGG,NGG,4,2:0 | 3:4,0.447777,0.483391,1,NC_000019.10:45146566-45146588,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146564-45146594,chr19:45146564-45146594.1,CGACCGGAAAAAGGGAACTT,AAGTTCCCTTTTTCCGGTCG,NGG,5,2:0 | 3:5,0.515998,0.466166,2,NC_000019.10:45146565-45146587,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146564-45146594,chr19:45146564-45146594.2,CCAAGTTCCCTTTTTCCGGT,CCAAGTTCCCTTTTTCCGGT,NGG,13,2:0 | 3:13,0.496109,0.386389,3,NC_000019.10:45146566-45146588,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146564-45146594,chr19:45146564-45146594.3,GACCGGAAAAAGGGAACTTG,CAAGTTCCCTTTTTCCGGTC,NGG,16,2:2 | 3:14,0.667039,0.374103,4,NC_000019.10:45146564-45146586,-,
+chr19:45148805-45148835,chr19:45148805-45148835.0,CTGGGCCTTTCTTACTGTTG,CTGGGCCTTTCTTACTGTTG,NGG,26,2:3 | 3:23,0.45174,0.236606,1,NC_000019.10:45148810-45148832,+,
+chr19:45148805-45148835,chr19:45148805-45148835.1,AACTGGGCCTTTCTTACTGT,AACTGGGCCTTTCTTACTGT,NGG,34,2:0 | 3:34,0.352378,0.287489,2,NC_000019.10:45148808-45148830,+,
+chr19:45148805-45148835,chr19:45148805-45148835.2,ACTGGGCCTTTCTTACTGTT,ACTGGGCCTTTCTTACTGTT,NGG,34,2:0 | 3:34,0.345143,0.16501,3,NC_000019.10:45148809-45148831,+,
+chr19:45148805-45148835,chr19:45148805-45148835.3,TGGGCCTTTCTTACTGTTGG,TGGGCCTTTCTTACTGTTGG,NGG,35,2:0 | 3:35,0.526504,0.163349,4,NC_000019.10:45148811-45148833,+,
+chr19:45169204-45169234,chr19:45169204-45169234.0,GGTAAGTGCTGGGGCGGATC,GATCCGCCCCAGCACTTACC,NGG,13,2:0 | 3:13,0.344582,0.3915,1,NC_000019.10:45169212-45169234,-,
+chr19:45169204-45169234,chr19:45169204-45169234.1,GCTGGGGCGGATCTGGACCC,GGGTCCAGATCCGCCCCAGC,NGG,30,2:1 | 3:29,0.462823,0.195595,2,NC_000019.10:45169205-45169227,-,
+chr19:45187775-45187805,chr19:45187775-45187805.0,TGGGGCATCAGTGGGGGTCC,GGACCCCCACTGATGCCCCA,NGG,60,2:1 | 3:59,0.292531,0.107822,1,NC_000019.10:45187778-45187800,-,
+chr19:45193746-45193776,chr19:45193746-45193776.0,TTCAGTGACTACACAGCAAA,TTTGCTGTGTAGTCACTGAA,NGG,45,2:0 | 3:45,0.445257,0.19347,1,NC_000019.10:45193746-45193768,-,
+chr19:45233944-45233974,chr19:45233944-45233974.0,GGTGCCGGAGCTCTTATTCT,GGTGCCGGAGCTCTTATTCT,NGG,6,2:0 | 3:6,0.408255,0.594542,1,NC_000019.10:45233945-45233967,+,
+chr19:45233944-45233974,chr19:45233944-45233974.1,CAGTCCTAGAATAAGAGCTC,GAGCTCTTATTCTAGGACTG,NGG,18,2:0 | 3:18,0.549853,0.334418,2,NC_000019.10:45233949-45233971,-,
+chr19:45238820-45238850,chr19:45238820-45238850.0,TTCCGGCTGGGCTGGGCCCC,GGGGCCCAGCCCAGCCGGAA,NGG,53,2:0 | 3:53,0.287527,0.110951,1,NC_000019.10:45238825-45238847,-,exocyst complex component 3 like 2
+chr19:45238820-45238850,chr19:45238820-45238850.1,CGGGGCCCAGCCCAGCCGGA,CGGGGCCCAGCCCAGCCGGA,NGG,57,2:2 | 3:55,0.381568,0.11286,2,NC_000019.10:45238827-45238849,+,exocyst complex component 3 like 2
+chr19:45238820-45238850,chr19:45238820-45238850.2,GGGGCCCAGCCCAGCCGGAA,GGGGCCCAGCCCAGCCGGAA,NGG,69,2:22 | 3:47,0.32949,0.125382,3,NC_000019.10:45238828-45238850,+,exocyst complex component 3 like 2
+chr19:45238820-45238850,chr19:45238820-45238850.3,CTTCCGGCTGGGCTGGGCCC,GGGCCCAGCCCAGCCGGAAG,NGG,93,2:5 | 3:88,0.275578,0.086576,4,NC_000019.10:45238826-45238848,-,exocyst complex component 3 like 2
+chr19:45266475-45266505,chr19:45266475-45266505.0,GCGGATGGGGGGGAGGGGAC,GCGGATGGGGGGGAGGGGAC,NGG,226,2:2 | 3:224,0.354944,0.0274051,1,NC_000019.10:45266481-45266503,+,
+chr19:45266475-45266505,chr19:45266475-45266505.1,GGGGGAGCGGATGGGGGGGA,GGGGGAGCGGATGGGGGGGA,NGG,432,2:21 | 3:411,0.39697,0.0100107,2,NC_000019.10:45266475-45266497,+,
+chr19:45332930-45332960,chr19:45332930-45332960.0,TCTCTTTCTCGGTCCCGGCA,TGCCGGGACCGAGAAAGAGA,NGG,6,2:0 | 3:6,0.543829,0.627545,1,NC_000019.10:45332938-45332960,-,
+chr19:45341234-45341264,chr19:45341234-45341264.0,GTGTCAGGCTGTGGGTATGA,GTGTCAGGCTGTGGGTATGA,NGG,45,2:6 | 3:39,0.580588,0.145283,1,NC_000019.10:45341238-45341260,+,
+chr19:45341234-45341264,chr19:45341234-45341264.1,TGTGTCAGGCTGTGGGTATG,TGTGTCAGGCTGTGGGTATG,NGG,81,2:5 | 3:76,0.511821,0.121045,2,NC_000019.10:45341237-45341259,+,
+chr19:45451772-45451802,chr19:45451772-45451802.0,GTGGTTTGCACTTGTGTATC,GTGGTTTGCACTTGTGTATC,NGG,42,2:0 | 3:42,0.173599,0.255589,1,NC_000019.10:45451775-45451797,+,
+chr19:45451772-45451802,chr19:45451772-45451802.1,TGGTTTGCACTTGTGTATCT,TGGTTTGCACTTGTGTATCT,NGG,50,2:4 | 3:46,0.458738,0.255429,2,NC_000019.10:45451776-45451798,+,
+chr19:51224690-51224720,chr19:51224690-51224720.0,ACTAAACACCCCATGGATCT,ACTAAACACCCCATGGATCT,NGG,33,2:0 | 3:33,0.423653,0.289099,1,NC_000019.10:51224695-51224717,+,"CD33 molecule, transcript variant X2"
+chr2:127054664-127054694,chr2:127054664-127054694.0,CAGAACCACCCGGGGCACTT,CAGAACCACCCGGGGCACTT,NGG,18,2:0 | 3:18,0.545087,0.402611,1,NC_000002.12:127054669-127054691,+,
+chr2:127054664-127054694,chr2:127054664-127054694.1,TCAGAACCACCCGGGGCACT,TCAGAACCACCCGGGGCACT,NGG,23,2:3 | 3:20,0.367228,0.187601,2,NC_000002.12:127054668-127054690,+,
+chr2:127068941-127068971,chr2:127068941-127068971.0,CCTTCAAACTGCCAAAAAGA,TCTTTTTGGCAGTTTGAAGG,NGG,47,2:6 | 3:41,0.514893,0.145272,1,NC_000002.12:127068944-127068966,-,"bridging integrator 1, transcript variant 15"
+chr2:127068941-127068971,chr2:127068941-127068971.1,CTTCTTTTTGGCAGTTTGAA,CTTCTTTTTGGCAGTTTGAA,NGG,82,2:6 | 3:76,0.418752,0.0827677,2,NC_000002.12:127068945-127068967,+,"bridging integrator 1, transcript variant 15"
+chr2:127085015-127085045,chr2:127085015-127085045.0,CGGGGGATGGAGGGAGAACA,TGTTCTCCCTCCATCCCCCG,NGG,124,2:7 | 3:117,0.50273,0.0595081,1,NC_000002.12:127085016-127085038,-,
+chr2:127104174-127104204,chr2:127104174-127104204.0,TTGGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCCAA,NGG,14,2:0 | 3:14,0.500127,0.470201,1,NC_000002.12:127104177-127104199,-,
+chr2:127104174-127104204,chr2:127104174-127104204.1,GGCCTGACGCAGGCTGATGG,CCATCAGCCTGCGTCAGGCC,NGG,38,2:2 | 3:36,0.556309,0.211083,2,NC_000002.12:127104174-127104196,-,
+chr2:134707030-134707060,chr2:134707030-134707060.0,TCGTTCCCAAGCACACCCAC,TCGTTCCCAAGCACACCCAC,NGG,8,2:0 | 3:8,0.545964,0.581435,1,NC_000002.12:134707038-134707060,+,
+chr2:168235416-168235446,chr2:168235416-168235446.0,TTAGGGCAGAATCACGAGCC,TTAGGGCAGAATCACGAGCC,NGG,8,2:0 | 3:8,0.494537,0.523128,1,NC_000002.12:168235419-168235441,+,
+chr2:168235416-168235446,chr2:168235416-168235446.1,TAGGGCAGAATCACGAGCCT,TAGGGCAGAATCACGAGCCT,NGG,9,2:0 | 3:9,0.556263,0.335089,2,NC_000002.12:168235420-168235442,+,
+chr20:56411202-56411232,chr20:56411202-56411232.0,TTGAGCCTGGCTTGGAAGAA,TTGAGCCTGGCTTGGAAGAA,NGG,78,2:6 | 3:72,0.406867,0.0979908,1,NC_000020.11:56411209-56411231,+,
+chr20:56411202-56411232,chr20:56411202-56411232.1,TGAGCCTGGCTTGGAAGAAT,TGAGCCTGGCTTGGAAGAAT,NGG,80,2:1 | 3:79,0.438048,0.145274,2,NC_000020.11:56411210-56411232,+,
+chr21:44333218-44333248,chr21:44333218-44333248.0,GCACCGGCTCACAGGCTCCA,GCACCGGCTCACAGGCTCCA,NGG,34,2:4 | 3:30,0.570586,0.174553,1,NC_000021.9:44333223-44333245,+,"cilia and flagella associated protein 410, transcript variant X1"
+chr21:44333218-44333248,chr21:44333218-44333248.1,GGCACCGGCTCACAGGCTCC,GGCACCGGCTCACAGGCTCC,NGG,36,2:4 | 3:32,0.40113,0.143454,2,NC_000021.9:44333222-44333244,+,"cilia and flagella associated protein 410, transcript variant X1"
+chr21:44333218-44333248,chr21:44333218-44333248.2,CCGGCTCACAGGCTCCAGGG,CCGGCTCACAGGCTCCAGGG,NGG,58,2:4 | 3:54,0.688577,0.154843,3,NC_000021.9:44333226-44333248,+,"cilia and flagella associated protein 410, transcript variant X1"
+chr21:44333218-44333248,chr21:44333218-44333248.3,CCACCCTGGAGCCTGTGAGC,GCTCACAGGCTCCAGGGTGG,NGG,99,2:5 | 3:94,0.499058,0.0816407,4,NC_000021.9:44333226-44333248,-,"cilia and flagella associated protein 410, transcript variant X1"
+chr3:58232609-58232639,chr3:58232609-58232639.0,ATACTGAGGCCCTCATCACA,TGTGATGAGGGCCTCAGTAT,NGG,16,2:0 | 3:16,0.633511,0.393238,1,NC_000003.12:58232613-58232635,-,
+chr3:182990283-182990313,chr3:182990283-182990313.0,CCAACTACGGTGAAGTTACA,TGTAACTTCACCGTAGTTGG,NGG,8,2:0 | 3:8,0.449991,0.445935,1,NC_000003.12:182990284-182990306,-,
+chr4:881867-881897,chr4:881867-881897.0,GAGCTGTCCCCTGTCCCCGG,GAGCTGTCCCCTGTCCCCGG,NGG,27,2:2 | 3:25,0.624795,0.156403,1,NC_000004.12:881872-881894,+,
+chr4:881867-881897,chr4:881867-881897.1,AGCTGTCCCCTGTCCCCGGA,AGCTGTCCCCTGTCCCCGGA,NGG,29,2:0 | 3:29,0.573428,0.163055,2,NC_000004.12:881873-881895,+,
+chr4:881867-881897,chr4:881867-881897.2,ACAGAGCTGTCCCCTGTCCC,ACAGAGCTGTCCCCTGTCCC,NGG,85,2:3 | 3:82,0.507979,0.0783536,3,NC_000004.12:881869-881891,+,
+chr4:945283-945313,chr4:945283-945313.0,GACAGAGACGGCGGGGGCCT,AGGCCCCCGCCGTCTCTGTC,NGG,30,2:0 | 3:30,0.298226,0.184312,1,NC_000004.12:945287-945309,-,
+chr4:945283-945313,chr4:945283-945313.1,ACAGAGACGGCGGGGGCCTG,CAGGCCCCCGCCGTCTCTGT,NGG,36,2:1 | 3:35,0.310371,0.100642,2,NC_000004.12:945286-945308,-,
+chr4:945283-945313,chr4:945283-945313.2,AGACAGAGACGGCGGGGGCC,GGCCCCCGCCGTCTCTGTCT,NGG,40,2:3 | 3:37,0.287769,0.159264,3,NC_000004.12:945288-945310,-,
+chr4:945309-945339,chr4:945309-945339.0,GCAACAAACGGCGGGGAGTG,CACTCCCCGCCGTTTGTTGC,NGG,9,2:0 | 3:9,0.544418,0.400953,1,NC_000004.12:945311-945333,-,
+chr4:957236-957266,chr4:957236-957266.0,CATCGGGAAGTGAAGGACAG,CTGTCCTTCACTTCCCGATG,NGG,34,2:1 | 3:33,0.700879,0.153288,1,NC_000004.12:957238-957260,-,
+chr4:958143-958173,chr4:958143-958173.0,CCGTGGTCCACATGGCCAGC,GCTGGCCATGTGGACCACGG,NGG,20,2:0 | 3:20,0.488199,0.250671,1,NC_000004.12:958148-958170,-,"transmembrane protein 175, transcript variant X3;transmembrane protein 175, transcript variant X3"
+chr4:958143-958173,chr4:958143-958173.1,CCAGCTGGCCATGTGGACCA,CCAGCTGGCCATGTGGACCA,NGG,56,2:2 | 3:54,0.601148,0.180607,2,NC_000004.12:958148-958170,+,"transmembrane protein 175, transcript variant X3;transmembrane protein 175, transcript variant X3"
+chr4:982794-982824,chr4:982794-982824.0,CCCCAGGGTTTATTTCAGTG,CACTGAAATAAACCCTGGGG,NGG,23,2:0 | 3:23,0.612583,0.294009,1,NC_000004.12:982799-982821,-,
+chr4:982794-982824,chr4:982794-982824.1,ACCTCACTGAAATAAACCCT,ACCTCACTGAAATAAACCCT,NGG,28,2:2 | 3:26,0.492692,0.2652,2,NC_000004.12:982798-982820,+,
+chr4:982794-982824,chr4:982794-982824.2,CACCTCACTGAAATAAACCC,CACCTCACTGAAATAAACCC,NGG,30,2:1 | 3:29,0.52486,0.187367,3,NC_000004.12:982797-982819,+,
+chr4:982794-982824,chr4:982794-982824.3,GGGTTTATTTCAGTGAGGTG,CACCTCACTGAAATAAACCC,NGG,42,2:2 | 3:40,0.498538,0.198717,4,NC_000004.12:982794-982816,-,
+chr4:982794-982824,chr4:982794-982824.4,CCTCACTGAAATAAACCCTG,CCTCACTGAAATAAACCCTG,NGG,51,2:0 | 3:51,0.773843,0.140854,5,NC_000004.12:982799-982821,+,
+chr4:11021159-11021189,chr4:11021159-11021189.0,GGTCTGTGTGTATGCAGAAC,GGTCTGTGTGTATGCAGAAC,NGG,46,2:1 | 3:45,0.47714,0.0925846,1,NC_000004.12:11021165-11021187,+,
+chr4:15722022-15722052,chr4:15722022-15722052.0,GAAGTTCCAAGCCACCAGGA,TCCTGGTGGCTTGGAACTTC,NGG,22,2:2 | 3:20,0.656923,0.198947,1,NC_000004.12:15722027-15722049,-,
+chr4:15722022-15722052,chr4:15722022-15722052.1,AAGTTCCAAGCCACCAGGAG,CTCCTGGTGGCTTGGAACTT,NGG,27,2:0 | 3:27,0.599495,0.343418,2,NC_000004.12:15722026-15722048,-,
+chr4:15722022-15722052,chr4:15722022-15722052.2,TGAAGTTCCAAGCCACCAGG,CCTGGTGGCTTGGAACTTCA,NGG,43,2:2 | 3:41,0.674281,0.226414,3,NC_000004.12:15722028-15722050,-,
+chr4:15722022-15722052,chr4:15722022-15722052.3,TCCAAGCCACCAGGAGGGGA,TCCCCTCCTGGTGGCTTGGA,NGG,57,2:3 | 3:54,0.50192,0.0925385,4,NC_000004.12:15722022-15722044,-,
+chr4:89631753-89631783,chr4:89631753-89631783.0,CTCCATTCAACTATTACTCA,TGAGTAATAGTTGAATGGAG,NGG,21,2:0 | 3:21,0.502226,0.28123,1,NC_000004.12:89631761-89631783,-,
+chr4:89631753-89631783,chr4:89631753-89631783.1,AACCTTGAGTAATAGTTGAA,AACCTTGAGTAATAGTTGAA,NGG,27,2:0 | 3:27,0.478791,0.195097,2,NC_000004.12:89631759-89631781,+,
+chr4:89775990-89776020,chr4:89775990-89776020.0,AATATCTGTTATTGGTACTG,CAGTACCAATAACAGATATT,NGG,30,2:6 | 3:24,0.693501,0.239941,1,NC_000004.12:89775994-89776016,-,
+chr4:89781614-89781644,chr4:89781614-89781644.0,AGTAAATGTGAGCTGCAATC,GATTGCAGCTCACATTTACT,NGG,21,2:0 | 3:21,0.45527,0.357212,1,NC_000004.12:89781616-89781638,-,
+chr6:40897485-40897515,chr6:40897485-40897515.0,CATACGTCTAGAGCCACCCC,CATACGTCTAGAGCCACCCC,NGG,3,2:0 | 3:3,0.673258,0.452072,1,NC_000006.12:40897493-40897515,+,
+chr6:41161453-41161483,chr6:41161453-41161483.0,GTGCTGACCACACGCTGGCA,GTGCTGACCACACGCTGGCA,NGG,11,2:0 | 3:11,0.451294,0.472599,1,NC_000006.12:41161457-41161479,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+chr6:41161453-41161483,chr6:41161453-41161483.1,TGCTGACCACACGCTGGCAT,TGCTGACCACACGCTGGCAT,NGG,16,2:0 | 3:16,0.434833,0.357426,2,NC_000006.12:41161458-41161480,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+chr6:3727653-3727683,chr6:3727653-3727683.0,TTCTGAAAACCAAAGCAACA,TTCTGAAAACCAAAGCAACA,NGG,158,2:9 | 3:149,0.635553,0.059664,1,NC_000006.12:3727661-3727683,+,
+chr6:3738237-3738267,chr6:3738237-3738267.0,CTCATTACAGATGACGACCC,GGGTCGTCATCTGTAATGAG,NGG,15,2:0 | 3:15,0.573255,0.660497,1,NC_000006.12:3738237-3738259,-,
+chr6:3738237-3738267,chr6:3738237-3738267.1,CGTCATCTGTAATGAGATGT,CGTCATCTGTAATGAGATGT,NGG,17,2:0 | 3:17,0.530641,0.411154,2,NC_000006.12:3738244-3738266,+,
+chr6:3738237-3738267,chr6:3738237-3738267.2,GTCATCTGTAATGAGATGTC,GTCATCTGTAATGAGATGTC,NGG,27,2:3 | 3:24,0.543407,0.188877,3,NC_000006.12:3738245-3738267,+,
+chr6:3793253-3793283,chr6:3793253-3793283.0,AATCATGTCTTCACCCCATG,AATCATGTCTTCACCCCATG,NGG,20,2:0 | 3:20,0.672006,0.27761,1,NC_000006.12:3793256-3793278,+,
+chr6:3793253-3793283,chr6:3793253-3793283.1,CATGTCTTCACCCCATGGGG,CATGTCTTCACCCCATGGGG,NGG,25,2:1 | 3:24,0.579133,0.157068,2,NC_000006.12:3793259-3793281,+,
+chr6:3793253-3793283,chr6:3793253-3793283.2,CAATCATGTCTTCACCCCAT,CAATCATGTCTTCACCCCAT,NGG,29,2:0 | 3:29,0.555337,0.241421,3,NC_000006.12:3793255-3793277,+,
+chr6:3793253-3793283,chr6:3793253-3793283.3,ACAATCATGTCTTCACCCCA,ACAATCATGTCTTCACCCCA,NGG,37,2:1 | 3:36,0.569272,0.250682,4,NC_000006.12:3793254-3793276,+,
+chr6:3855742-3855772,chr6:3855742-3855772.0,AATATTCATTAAAATAAACC,AATATTCATTAAAATAAACC,NGG,244,2:9 | 3:235,0.630615,0.0395385,1,NC_000006.12:3855749-3855771,+,
+chr6:4026652-4026682,chr6:4026652-4026682.0,TGCTATAGATTAGATAATCT,TGCTATAGATTAGATAATCT,NGG,24,2:1 | 3:23,0.519096,0.298367,1,NC_000006.12:4026653-4026675,+,
+chr6:4032340-4032370,chr6:4032340-4032370.0,TCTACTTTCATTTATAATTG,CAATTATAAATGAAAGTAGA,NGG,120,2:14 | 3:106,0.525161,0.0523615,1,NC_000006.12:4032347-4032369,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:4034578-4034608,chr6:4034578-4034608.0,CAAAATACTATATGGTATCC,GGATACCATATAGTATTTTG,NGG,63,2:2 | 3:61,0.464984,0.0624729,1,NC_000006.12:4034583-4034605,-,
+chr6:4095266-4095296,chr6:4095266-4095296.0,ATTGTGTTTCAAGGTGTTAC,ATTGTGTTTCAAGGTGTTAC,NGG,37,2:0 | 3:37,0.293351,0.209671,1,NC_000006.12:4095269-4095291,+,
+chr6:4095266-4095296,chr6:4095266-4095296.1,TGTAACACCTTGAAACACAA,TTGTGTTTCAAGGTGTTACA,NGG,56,2:3 | 3:53,0.680984,0.159323,2,NC_000006.12:4095267-4095289,-,
+chr6:3613389-3613419,chr6:3613389-3613419.0,CCTTCTTACAACGAAGTAAT,ATTACTTCGTTGTAAGAAGG,NGG,10,2:0 | 3:10,0.202015,0.716406,1,NC_000006.12:3613391-3613413,-,
+chr6:3613389-3613419,chr6:3613389-3613419.1,CCAATTACTTCGTTGTAAGA,CCAATTACTTCGTTGTAAGA,NGG,11,2:0 | 3:11,0.462539,0.496243,2,NC_000006.12:3613391-3613413,+,
+chr6:3854553-3854583,chr6:3854553-3854583.0,AACCTGTCTGCCAGCAGTGC,GCACTGCTGGCAGACAGGTT,NGG,30,2:0 | 3:30,0.362752,0.137451,1,NC_000006.12:3854561-3854583,-,
+chr6:3854553-3854583,chr6:3854553-3854583.1,ACCTGTCTGCCAGCAGTGCT,AGCACTGCTGGCAGACAGGT,NGG,45,2:4 | 3:41,0.445756,0.129438,2,NC_000006.12:3854560-3854582,-,
+chr6:3854553-3854583,chr6:3854553-3854583.2,TCCCAGCACTGCTGGCAGAC,TCCCAGCACTGCTGGCAGAC,NGG,102,2:6 | 3:96,0.490728,0.12539,3,NC_000006.12:3854559-3854581,+,
+chr6:3854553-3854583,chr6:3854553-3854583.3,TCTGCCAGCAGTGCTGGGAG,CTCCCAGCACTGCTGGCAGA,NGG,118,2:3 | 3:115,0.471813,0.0552407,4,NC_000006.12:3854555-3854577,-,
+chr6:3919152-3919182,chr6:3919152-3919182.0,CTCACCTCCCAAGTATTAAC,GTTAATACTTGGGAGGTGAG,NGG,66,2:5 | 3:61,0.401654,0.101145,1,NC_000006.12:3919156-3919178,-,
+chr6:3919152-3919182,chr6:3919152-3919182.1,GTGGCCTGTTAATACTTGGG,GTGGCCTGTTAATACTTGGG,NGG,156,2:17 | 3:139,0.664541,0.0165412,2,NC_000006.12:3919152-3919174,+,
+chr6:3958449-3958479,chr6:3958449-3958479.0,CTAACTAGCTGTCTCCGTGT,ACACGGAGACAGCTAGTTAG,NGG,1,2:0 | 3:1,0.670168,0.919962,1,NC_000006.12:3958456-3958478,-,
+chr6:3958449-3958479,chr6:3958449-3958479.1,CTAGCTGTCTCCGTGTCGGC,GCCGACACGGAGACAGCTAG,NGG,3,2:0 | 3:3,0.504791,0.523968,2,NC_000006.12:3958452-3958474,-,
+chr6:3700415-3700445,chr6:3700415-3700445.0,GAGGAGGCAACCCACGCGAA,TTCGCGTGGGTTGCCTCCTC,NGG,7,2:0 | 3:7,0.606061,0.325122,1,NC_000006.12:3700420-3700442,-,
+chr6:3700415-3700445,chr6:3700415-3700445.1,AGAGGAGGCAACCCACGCGA,TCGCGTGGGTTGCCTCCTCT,NGG,10,2:0 | 3:10,0.579126,0.366529,2,NC_000006.12:3700421-3700443,-,
+chr6:3765263-3765293,chr6:3765263-3765293.0,GATTATTTGTTTCAGACAGA,TCTGTCTGAAACAAATAATC,NGG,64,2:3 | 3:61,0.53784,0.132731,1,NC_000006.12:3765266-3765288,-,
+chr6:3765263-3765293,chr6:3765263-3765293.1,ATTATTTGTTTCAGACAGAA,TTCTGTCTGAAACAAATAAT,NGG,149,2:6 | 3:143,0.549623,0.0406069,2,NC_000006.12:3765265-3765287,-,
+chr6:4021043-4021073,chr6:4021043-4021073.0,GGCTGTGGAGATTAGAAGTT,AACTTCTAATCTCCACAGCC,NGG,37,2:0 | 3:37,0.344317,0.194342,1,NC_000006.12:4021043-4021065,-,
+chr6:4028951-4028981,chr6:4028951-4028981.0,ATAATATATGGTTCTAGGAG,CTCCTAGAACCATATATTAT,NGG,31,2:1 | 3:30,0.59734,0.181515,1,NC_000006.12:4028956-4028978,-,
+chr6:4028951-4028981,chr6:4028951-4028981.1,TAATATATGGTTCTAGGAGT,ACTCCTAGAACCATATATTA,NGG,43,2:4 | 3:39,0.550991,0.167272,2,NC_000006.12:4028955-4028977,-,
+chr6:4101472-4101502,chr6:4101472-4101502.0,GTTGCAGGGGGCTTCGGTAC,GTTGCAGGGGGCTTCGGTAC,NGG,2,2:0 | 3:2,0.453494,0.891363,1,NC_000006.12:4101472-4101494,+,
+chr6:4101472-4101502,chr6:4101472-4101502.1,AGGGGGCTTCGGTACAGGAC,AGGGGGCTTCGGTACAGGAC,NGG,15,2:0 | 3:15,0.504232,0.357584,2,NC_000006.12:4101477-4101499,+,
+chr6:4101472-4101502,chr6:4101472-4101502.2,GGGCTTCGGTACAGGACAGG,GGGCTTCGGTACAGGACAGG,NGG,20,2:0 | 3:20,0.408894,0.321595,3,NC_000006.12:4101480-4101502,+,
+chr6:4135765-4135795,chr6:4135765-4135795.0,AGGAGCCTGGGGCATGGGCG,AGGAGCCTGGGGCATGGGCG,NGG,145,2:6 | 3:139,0.334815,0.0700108,1,NC_000006.12:4135771-4135793,+,
+chr6:4135765-4135795,chr6:4135765-4135795.1,CCATGCCCCAGGCTCCTGCC,GGCAGGAGCCTGGGGCATGG,NGG,161,2:4 | 3:157,0.340176,0.0522178,2,NC_000006.12:4135765-4135787,-,
+chr6:4135765-4135795,chr6:4135765-4135795.2,GCAGGAGCCTGGGGCATGGG,GCAGGAGCCTGGGGCATGGG,NGG,254,2:27 | 3:227,0.299538,0.0349287,3,NC_000006.12:4135769-4135791,+,
+chr6:4135765-4135795,chr6:4135765-4135795.3,CCAGGCAGGAGCCTGGGGCA,CCAGGCAGGAGCCTGGGGCA,NGG,531,2:47 | 3:484,0.406683,0.0176135,4,NC_000006.12:4135765-4135787,+,
+chr6:3737172-3737202,chr6:3737172-3737202.0,ACTTCCGATCTAGAATACTG,ACTTCCGATCTAGAATACTG,NGG,8,2:0 | 3:8,0.764152,0.432197,1,NC_000006.12:3737180-3737202,+,"PX domain containing 1, transcript variant X1"
+chr6:3737172-3737202,chr6:3737172-3737202.1,CAACTTCCGATCTAGAATAC,CAACTTCCGATCTAGAATAC,NGG,9,2:0 | 3:9,0.339525,0.58255,2,NC_000006.12:3737178-3737200,+,"PX domain containing 1, transcript variant X1"
+chr6:3737172-3737202,chr6:3737172-3737202.2,AACTTCCGATCTAGAATACT,AACTTCCGATCTAGAATACT,NGG,16,2:0 | 3:16,0.495177,0.29254,3,NC_000006.12:3737179-3737201,+,"PX domain containing 1, transcript variant X1"
+chr6:3747764-3747794,chr6:3747764-3747794.0,CTTGTTTATCTTGTTACTAT,CTTGTTTATCTTGTTACTAT,NGG,87,2:4 | 3:83,0.282363,0.107575,1,NC_000006.12:3747764-3747786,+,
+chr6:3973799-3973829,chr6:3973799-3973829.0,AAGCTGGAGTGGGGGTGTCC,GGACACCCCCACTCCAGCTT,NGG,66,2:3 | 3:63,0.456746,0.0954413,1,NC_000006.12:3973805-3973827,-,
+chr6:3595324-3595354,chr6:3595324-3595354.0,TTCTATCCTGGCTTGTGGCC,GGCCACAAGCCAGGATAGAA,NGG,28,2:0 | 3:28,0.372668,0.189309,1,NC_000006.12:3595332-3595354,-,
+chr6:3595324-3595354,chr6:3595324-3595354.1,GCACAGCCCGGCCACAAGCC,GCACAGCCCGGCCACAAGCC,NGG,34,2:0 | 3:34,0.523739,0.297345,2,NC_000006.12:3595326-3595348,+,
+chr6:3908594-3908624,chr6:3908594-3908624.0,AGAAGCGCACACATCCTGAG,CTCAGGATGTGTGCGCTTCT,NGG,17,2:1 | 3:16,0.735973,0.23595,1,NC_000006.12:3908595-3908617,-,uncharacterized LOC107986558
+chr6:3908594-3908624,chr6:3908594-3908624.1,GAGAAGCGCACACATCCTGA,TCAGGATGTGTGCGCTTCTC,NGG,25,2:2 | 3:23,0.607969,0.17976,2,NC_000006.12:3908596-3908618,-,uncharacterized LOC107986558
+chr6:3908594-3908624,chr6:3908594-3908624.2,AGAGAAGCGCACACATCCTG,CAGGATGTGTGCGCTTCTCT,NGG,31,2:7 | 3:24,0.614604,0.186523,3,NC_000006.12:3908597-3908619,-,uncharacterized LOC107986558
+chr6:3910714-3910744,chr6:3910714-3910744.0,GAAATCAGCTTGTTCACAGT,ACTGTGAACAAGCTGATTTC,NGG,38,2:6 | 3:32,0.542308,0.141988,1,NC_000006.12:3910716-3910738,-,
+chr6:3910714-3910744,chr6:3910714-3910744.1,AAATCAGCTTGTTCACAGTG,CACTGTGAACAAGCTGATTT,NGG,52,2:2 | 3:50,0.742599,0.121395,2,NC_000006.12:3910715-3910737,-,
+chr6:3910714-3910744,chr6:3910714-3910744.2,AGAAATCAGCTTGTTCACAG,CTGTGAACAAGCTGATTTCT,NGG,59,2:5 | 3:54,0.591491,0.139546,3,NC_000006.12:3910717-3910739,-,
+chr6:3711344-3711374,chr6:3711344-3711374.0,GCATAACTATAAGCCAGGCA,GCATAACTATAAGCCAGGCA,NGG,81,2:2 | 3:79,0.701466,0.0605129,1,NC_000006.12:3711347-3711369,+,
+chr6:3721936-3721966,chr6:3721936-3721966.0,GCTGAGCAGGGGATGAGGTT,GCTGAGCAGGGGATGAGGTT,NGG,65,2:2 | 3:63,0.360911,0.149928,1,NC_000006.12:3721936-3721958,+,
+chr6:3721936-3721966,chr6:3721936-3721966.1,CTGAGCAGGGGATGAGGTTG,CTGAGCAGGGGATGAGGTTG,NGG,119,2:3 | 3:116,0.418175,0.0657637,2,NC_000006.12:3721937-3721959,+,
+chr6:3732802-3732832,chr6:3732802-3732832.0,TGTCTCTGCTCTCATGATGT,ACATCATGAGAGCAGAGACA,NGG,52,2:0 | 3:52,0.502147,0.189962,1,NC_000006.12:3732802-3732824,-,
+chr6:3776294-3776324,chr6:3776294-3776324.0,TCTACTACATCAGTGTCTAT,TCTACTACATCAGTGTCTAT,NGG,25,2:1 | 3:24,0.585049,0.264915,1,NC_000006.12:3776297-3776319,+,
+chr6:3776294-3776324,chr6:3776294-3776324.1,ATCTACTACATCAGTGTCTA,ATCTACTACATCAGTGTCTA,NGG,30,2:0 | 3:30,0.254816,0.198122,2,NC_000006.12:3776296-3776318,+,
+chr6:4018256-4018286,chr6:4018256-4018286.0,AGCCTCGGGCAGGTACACTT,AGCCTCGGGCAGGTACACTT,NGG,3,2:0 | 3:3,0.567785,0.485999,1,NC_000006.12:4018258-4018280,+,
+chr6:4018256-4018286,chr6:4018256-4018286.1,AAAGTGTACCTGCCCGAGGC,GCCTCGGGCAGGTACACTTT,NGG,8,2:0 | 3:8,0.455036,0.771144,2,NC_000006.12:4018256-4018278,-,
+chr6:4018256-4018286,chr6:4018256-4018286.2,CACCAAAGTGTACCTGCCCG,CGGGCAGGTACACTTTGGTG,NGG,8,2:0 | 3:8,0.691495,0.474459,3,NC_000006.12:4018260-4018282,-,
+chr6:4018256-4018286,chr6:4018256-4018286.3,CGGGCAGGTACACTTTGGTG,CGGGCAGGTACACTTTGGTG,NGG,10,2:0 | 3:10,0.623168,0.503527,4,NC_000006.12:4018263-4018285,+,
+chr6:4018970-4019000,chr6:4018970-4019000.0,GTTACAATTAAAGCAAACAT,ATGTTTGCTTTAATTGTAAC,NGG,60,2:0 | 3:60,0.667469,0.150435,1,NC_000006.12:4018970-4018992,-,
+chr8:16840054-16840084,chr8:16840054-16840084.0,ATTCTTGGTTGGGGATTGAG,ATTCTTGGTTGGGGATTGAG,NGG,41,2:1 | 3:40,0.496252,0.112747,1,NC_000008.11:16840062-16840084,+,
+chr8:27369257-27369287,chr8:27369257-27369287.0,TCCCCCTACATGCCAGTGAA,TTCACTGGCATGTAGGGGGA,NGG,15,2:2 | 3:13,0.592527,0.261018,1,NC_000008.11:27369261-27369283,-,
+chr8:27369257-27369287,chr8:27369257-27369287.1,GTCCCCCTACATGCCAGTGA,TCACTGGCATGTAGGGGGAC,NGG,15,2:0 | 3:15,0.545018,0.246548,2,NC_000008.11:27369262-27369284,-,
+chr8:27369257-27369287,chr8:27369257-27369287.2,GATCCCTTCACTGGCATGTA,GATCCCTTCACTGGCATGTA,NGG,17,2:0 | 3:17,0.431524,0.347624,3,NC_000008.11:27369258-27369280,+,
+chr8:27369257-27369287,chr8:27369257-27369287.3,ATCCCTTCACTGGCATGTAG,ATCCCTTCACTGGCATGTAG,NGG,30,2:0 | 3:30,0.605535,0.245238,4,NC_000008.11:27369259-27369281,+,
+chr8:27369257-27369287,chr8:27369257-27369287.4,GGATCCCTTCACTGGCATGT,GGATCCCTTCACTGGCATGT,NGG,31,2:0 | 3:31,0.522998,0.211116,5,NC_000008.11:27369257-27369279,+,
+chr8:27558043-27558073,chr8:27558043-27558073.0,CTTGTGTTGGCCACAGCCCC,CTTGTGTTGGCCACAGCCCC,NGG,46,2:3 | 3:43,0.213663,0.181998,1,NC_000008.11:27558051-27558073,+,
+chr8:27572973-27573003,chr8:27572973-27573003.0,TGGAATGCTCCTGTCCTCGA,TCGAGGACAGGAGCATTCCA,NGG,6,2:0 | 3:6,0.564438,0.74068,1,NC_000008.11:27572975-27572997,-,
+chr8:27572973-27573003,chr8:27572973-27573003.1,CGAGGACAGGAGCATTCCAC,CGAGGACAGGAGCATTCCAC,NGG,8,2:0 | 3:8,0.528797,0.634385,2,NC_000008.11:27572979-27573001,+,
+chr8:27572973-27573003,chr8:27572973-27573003.2,TCGAGGACAGGAGCATTCCA,TCGAGGACAGGAGCATTCCA,NGG,13,2:2 | 3:11,0.569691,0.273222,3,NC_000008.11:27572978-27573000,+,
+chr8:27603959-27603989,chr8:27603959-27603989.0,CAGAATCACCGGGGAGTCCC,CAGAATCACCGGGGAGTCCC,NGG,36,2:0 | 3:36,0.349239,0.198049,1,NC_000008.11:27603967-27603989,+,
+chr8:27632426-27632456,chr8:27632426-27632456.0,GACATTGAAAGCCCACCTCT,AGAGGTGGGCTTTCAATGTC,NGG,16,2:0 | 3:16,0.478053,0.39443,1,NC_000008.11:27632431-27632453,-,
+chr8:27632426-27632456,chr8:27632426-27632456.1,ACATTGAAAGCCCACCTCTT,AAGAGGTGGGCTTTCAATGT,NGG,25,2:1 | 3:24,0.414887,0.315446,2,NC_000008.11:27632430-27632452,-,
+chr8:27632426-27632456,chr8:27632426-27632456.2,CATTGAAAGCCCACCTCTTG,CAAGAGGTGGGCTTTCAATG,NGG,27,2:3 | 3:24,0.545741,0.311931,3,NC_000008.11:27632429-27632451,-,
+chr8:27632426-27632456,chr8:27632426-27632456.3,AAGAGGTGGGCTTTCAATGT,AAGAGGTGGGCTTTCAATGT,NGG,37,2:2 | 3:35,0.576364,0.322885,4,NC_000008.11:27632433-27632455,+,
+chr8:143868121-143868151,chr8:143868121-143868151.0,GTCGAAGTAGCCGCAGCGGT,GTCGAAGTAGCCGCAGCGGT,NGG,16,2:5 | 3:11,0.645633,0.41051,1,NC_000008.11:143868121-143868143,+,"epiplakin 1, transcript variant X2"
+chr9:27491928-27491958,chr9:27491928-27491958.0,TTTGATATCACTACTTTTAT,TTTGATATCACTACTTTTAT,NGG,77,2:0 | 3:77,0.120513,0.122023,1,NC_000009.12:27491930-27491952,+,
+chr9:27511270-27511300,chr9:27511270-27511300.0,TAACAGTTTAATAGAAAATC,TAACAGTTTAATAGAAAATC,NGG,94,2:1 | 3:93,0.369319,0.0828511,1,NC_000009.12:27511278-27511300,+,

data/GuideScan2/GuideScan2_30bp_NGG.csv

@@ -0,0 +1,352 @@
+query,Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+rs147288664,chr1:152220435-152220465,chr1:152220435-152220465.0,GACGTGAGCTGGAGCCATGT,GACGTGAGCTGGAGCCATGT,NGG,18,2:0 | 3:18,0.602148,0.29527,1,NC_000001.11:152220443-152220465,+,hornerin
+rs147288664,chr1:152220435-152220465,chr1:152220435-152220465.0,GACGTGAGCTGGAGCCATGT,GACGTGAGCTGGAGCCATGT,NGG,18,2:0 | 3:18,0.602148,0.29527,1,NC_000001.11:152220443-152220465,+,hornerin
+rs147288664,chr1:152220435-152220465,chr1:152220435-152220465.0,GACGTGAGCTGGAGCCATGT,GACGTGAGCTGGAGCCATGT,NGG,18,2:0 | 3:18,0.602148,0.29527,1,NC_000001.11:152220443-152220465,+,hornerin
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.0,AGAGGTCTGGACCAGGGTAC,AGAGGTCTGGACCAGGGTAC,NGG,26,2:0 | 3:26,0.361226,0.28323,1,NC_000001.11:155135677-155135699,+,
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.1,GAGGTCTGGACCAGGGTACT,GAGGTCTGGACCAGGGTACT,NGG,38,2:1 | 3:37,0.500068,0.188367,2,NC_000001.11:155135678-155135700,+,
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.2,TCTGGACCAGGGTACTGGGA,TCTGGACCAGGGTACTGGGA,NGG,53,2:0 | 3:53,0.564113,0.0963628,3,NC_000001.11:155135682-155135704,+,
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.0,AGAGGTCTGGACCAGGGTAC,AGAGGTCTGGACCAGGGTAC,NGG,26,2:0 | 3:26,0.361226,0.28323,1,NC_000001.11:155135677-155135699,+,
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.1,GAGGTCTGGACCAGGGTACT,GAGGTCTGGACCAGGGTACT,NGG,38,2:1 | 3:37,0.500068,0.188367,2,NC_000001.11:155135678-155135700,+,
+rs12726330,chr1:155135675-155135705,chr1:155135675-155135705.2,TCTGGACCAGGGTACTGGGA,TCTGGACCAGGGTACTGGGA,NGG,53,2:0 | 3:53,0.564113,0.0963628,3,NC_000001.11:155135682-155135704,+,
+rs71630614,chr1:156102410-156102440,chr1:156102410-156102440.0,TGGTTCTGTCACCTCTGGTT,TGGTTCTGTCACCTCTGGTT,NGG,37,2:1 | 3:36,0.425775,0.231612,1,NC_000001.11:156102415-156102437,+,
+rs71630614,chr1:156102410-156102440,chr1:156102410-156102440.1,TAACCAGAGGTGACAGAACC,GGTTCTGTCACCTCTGGTTA,NGG,39,2:0 | 3:39,0.503448,0.196528,2,NC_000001.11:156102413-156102435,-,
+rs71630614,chr1:156102410-156102440,chr1:156102410-156102440.2,AGTCCTGGTTCTGTCACCTC,AGTCCTGGTTCTGTCACCTC,NGG,62,2:3 | 3:59,0.413392,0.181194,3,NC_000001.11:156102410-156102432,+,
+rs55636820,chr2:127054664-127054694,chr2:127054664-127054694.0,CAGAACCACCCGGGGCACTT,CAGAACCACCCGGGGCACTT,NGG,18,2:0 | 3:18,0.545087,0.402611,1,NC_000002.12:127054669-127054691,+,
+rs55636820,chr2:127054664-127054694,chr2:127054664-127054694.1,TCAGAACCACCCGGGGCACT,TCAGAACCACCCGGGGCACT,NGG,23,2:3 | 3:20,0.367228,0.187601,2,NC_000002.12:127054668-127054690,+,
+rs1060743,chr2:127068941-127068971,chr2:127068941-127068971.0,CCTTCAAACTGCCAAAAAGA,TCTTTTTGGCAGTTTGAAGG,NGG,47,2:6 | 3:41,0.514893,0.145272,1,NC_000002.12:127068944-127068966,-,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068941-127068971,chr2:127068941-127068971.1,CTTCTTTTTGGCAGTTTGAA,CTTCTTTTTGGCAGTTTGAA,NGG,82,2:6 | 3:76,0.418752,0.0827677,2,NC_000002.12:127068945-127068967,+,"bridging integrator 1, transcript variant 15"
+rs11694743,chr2:127085015-127085045,chr2:127085015-127085045.0,CGGGGGATGGAGGGAGAACA,TGTTCTCCCTCCATCCCCCG,NGG,124,2:7 | 3:117,0.50273,0.0595081,1,NC_000002.12:127085016-127085038,-,
+rs4663096,chr2:127104174-127104204,chr2:127104174-127104204.0,TTGGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCCAA,NGG,14,2:0 | 3:14,0.500127,0.470201,1,NC_000002.12:127104177-127104199,-,
+rs4663096,chr2:127104174-127104204,chr2:127104174-127104204.1,GGCCTGACGCAGGCTGATGG,CCATCAGCCTGCGTCAGGCC,NGG,38,2:2 | 3:36,0.556309,0.211083,2,NC_000002.12:127104174-127104196,-,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TCGTTCCCAAGCACACCCAC,TCGTTCCCAAGCACACCCAC,NGG,8,2:0 | 3:8,0.545964,0.581435,1,NC_000002.12:134707038-134707060,+,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TCGTTCCCAAGCACACCCAC,TCGTTCCCAAGCACACCCAC,NGG,8,2:0 | 3:8,0.545964,0.581435,1,NC_000002.12:134707038-134707060,+,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TCGTTCCCAAGCACACCCAC,TCGTTCCCAAGCACACCCAC,NGG,8,2:0 | 3:8,0.545964,0.581435,1,NC_000002.12:134707038-134707060,+,
+rs2390669,chr2:168235416-168235446,chr2:168235416-168235446.0,TTAGGGCAGAATCACGAGCC,TTAGGGCAGAATCACGAGCC,NGG,8,2:0 | 3:8,0.494537,0.523128,1,NC_000002.12:168235419-168235441,+,
+rs2390669,chr2:168235416-168235446,chr2:168235416-168235446.1,TAGGGCAGAATCACGAGCCT,TAGGGCAGAATCACGAGCCT,NGG,9,2:0 | 3:9,0.556263,0.335089,2,NC_000002.12:168235420-168235442,+,
+rs4488803,chr3:58232609-58232639,chr3:58232609-58232639.0,ATACTGAGGCCCTCATCACA,TGTGATGAGGGCCTCAGTAT,NGG,16,2:0 | 3:16,0.633511,0.393238,1,NC_000003.12:58232613-58232635,-,
+rs4488803,chr3:58232609-58232639,chr3:58232609-58232639.0,ATACTGAGGCCCTCATCACA,TGTGATGAGGGCCTCAGTAT,NGG,16,2:0 | 3:16,0.633511,0.393238,1,NC_000003.12:58232613-58232635,-,
+rs73177394,chr3:182990283-182990313,chr3:182990283-182990313.0,CCAACTACGGTGAAGTTACA,TGTAACTTCACCGTAGTTGG,NGG,8,2:0 | 3:8,0.449991,0.445935,1,NC_000003.12:182990284-182990306,-,
+rs45486093,chr4:881867-881897,chr4:881867-881897.0,GAGCTGTCCCCTGTCCCCGG,GAGCTGTCCCCTGTCCCCGG,NGG,27,2:2 | 3:25,0.624795,0.156403,1,NC_000004.12:881872-881894,+,
+rs45486093,chr4:881867-881897,chr4:881867-881897.1,AGCTGTCCCCTGTCCCCGGA,AGCTGTCCCCTGTCCCCGGA,NGG,29,2:0 | 3:29,0.573428,0.163055,2,NC_000004.12:881873-881895,+,
+rs45486093,chr4:881867-881897,chr4:881867-881897.2,ACAGAGCTGTCCCCTGTCCC,ACAGAGCTGTCCCCTGTCCC,NGG,85,2:3 | 3:82,0.507979,0.0783536,3,NC_000004.12:881869-881891,+,
+rs6599388,chr4:945283-945313,chr4:945283-945313.0,GACAGAGACGGCGGGGGCCT,AGGCCCCCGCCGTCTCTGTC,NGG,30,2:0 | 3:30,0.298226,0.184312,1,NC_000004.12:945287-945309,-,
+rs6599388,chr4:945283-945313,chr4:945283-945313.1,ACAGAGACGGCGGGGGCCTG,CAGGCCCCCGCCGTCTCTGT,NGG,36,2:1 | 3:35,0.310371,0.100642,2,NC_000004.12:945286-945308,-,
+rs6599388,chr4:945283-945313,chr4:945283-945313.2,AGACAGAGACGGCGGGGGCC,GGCCCCCGCCGTCTCTGTCT,NGG,40,2:3 | 3:37,0.287769,0.159264,3,NC_000004.12:945288-945310,-,
+rs6599389,chr4:945309-945339,chr4:945309-945339.0,GCAACAAACGGCGGGGAGTG,CACTCCCCGCCGTTTGTTGC,NGG,9,2:0 | 3:9,0.544418,0.400953,1,NC_000004.12:945311-945333,-,
+rs6599389,chr4:945309-945339,chr4:945309-945339.0,GCAACAAACGGCGGGGAGTG,CACTCCCCGCCGTTTGTTGC,NGG,9,2:0 | 3:9,0.544418,0.400953,1,NC_000004.12:945311-945333,-,
+rs3733344,chr4:957236-957266,chr4:957236-957266.0,CATCGGGAAGTGAAGGACAG,CTGTCCTTCACTTCCCGATG,NGG,34,2:1 | 3:33,0.700879,0.153288,1,NC_000004.12:957238-957260,-,
+rs3733344,chr4:957236-957266,chr4:957236-957266.0,CATCGGGAAGTGAAGGACAG,CTGTCCTTCACTTCCCGATG,NGG,34,2:1 | 3:33,0.700879,0.153288,1,NC_000004.12:957238-957260,-,
+rs3733344,chr4:957236-957266,chr4:957236-957266.0,CATCGGGAAGTGAAGGACAG,CTGTCCTTCACTTCCCGATG,NGG,34,2:1 | 3:33,0.700879,0.153288,1,NC_000004.12:957238-957260,-,
+rs34311866,chr4:958143-958173,chr4:958143-958173.0,CCGTGGTCCACATGGCCAGC,GCTGGCCATGTGGACCACGG,NGG,20,2:0 | 3:20,0.488199,0.250671,1,NC_000004.12:958148-958170,-,"transmembrane protein 175, transcript variant X3;transmembrane protein 175, transcript variant X3"
+rs34311866,chr4:958143-958173,chr4:958143-958173.1,CCAGCTGGCCATGTGGACCA,CCAGCTGGCCATGTGGACCA,NGG,56,2:2 | 3:54,0.601148,0.180607,2,NC_000004.12:958148-958170,+,"transmembrane protein 175, transcript variant X3;transmembrane protein 175, transcript variant X3"
+rs17783233,chr4:982794-982824,chr4:982794-982824.0,CCCCAGGGTTTATTTCAGTG,CACTGAAATAAACCCTGGGG,NGG,23,2:0 | 3:23,0.612583,0.294009,1,NC_000004.12:982799-982821,-,
+rs17783233,chr4:982794-982824,chr4:982794-982824.1,ACCTCACTGAAATAAACCCT,ACCTCACTGAAATAAACCCT,NGG,28,2:2 | 3:26,0.492692,0.2652,2,NC_000004.12:982798-982820,+,
+rs17783233,chr4:982794-982824,chr4:982794-982824.2,CACCTCACTGAAATAAACCC,CACCTCACTGAAATAAACCC,NGG,30,2:1 | 3:29,0.52486,0.187367,3,NC_000004.12:982797-982819,+,
+rs17783233,chr4:982794-982824,chr4:982794-982824.3,GGGTTTATTTCAGTGAGGTG,CACCTCACTGAAATAAACCC,NGG,42,2:2 | 3:40,0.498538,0.198717,4,NC_000004.12:982794-982816,-,
+rs17783233,chr4:982794-982824,chr4:982794-982824.4,CCTCACTGAAATAAACCCTG,CCTCACTGAAATAAACCCTG,NGG,51,2:0 | 3:51,0.773843,0.140854,5,NC_000004.12:982799-982821,+,
+rs4373155,chr4:11021159-11021189,chr4:11021159-11021189.0,GGTCTGTGTGTATGCAGAAC,GGTCTGTGTGTATGCAGAAC,NGG,46,2:1 | 3:45,0.47714,0.0925846,1,NC_000004.12:11021165-11021187,+,
+rs4373155,chr4:11021159-11021189,chr4:11021159-11021189.0,GGTCTGTGTGTATGCAGAAC,GGTCTGTGTGTATGCAGAAC,NGG,46,2:1 | 3:45,0.47714,0.0925846,1,NC_000004.12:11021165-11021187,+,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.0,GAAGTTCCAAGCCACCAGGA,TCCTGGTGGCTTGGAACTTC,NGG,22,2:2 | 3:20,0.656923,0.198947,1,NC_000004.12:15722027-15722049,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.1,AAGTTCCAAGCCACCAGGAG,CTCCTGGTGGCTTGGAACTT,NGG,27,2:0 | 3:27,0.599495,0.343418,2,NC_000004.12:15722026-15722048,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.2,TGAAGTTCCAAGCCACCAGG,CCTGGTGGCTTGGAACTTCA,NGG,43,2:2 | 3:41,0.674281,0.226414,3,NC_000004.12:15722028-15722050,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.3,TCCAAGCCACCAGGAGGGGA,TCCCCTCCTGGTGGCTTGGA,NGG,57,2:3 | 3:54,0.50192,0.0925385,4,NC_000004.12:15722022-15722044,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.0,GAAGTTCCAAGCCACCAGGA,TCCTGGTGGCTTGGAACTTC,NGG,22,2:2 | 3:20,0.656923,0.198947,1,NC_000004.12:15722027-15722049,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.1,AAGTTCCAAGCCACCAGGAG,CTCCTGGTGGCTTGGAACTT,NGG,27,2:0 | 3:27,0.599495,0.343418,2,NC_000004.12:15722026-15722048,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.2,TGAAGTTCCAAGCCACCAGG,CCTGGTGGCTTGGAACTTCA,NGG,43,2:2 | 3:41,0.674281,0.226414,3,NC_000004.12:15722028-15722050,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.3,TCCAAGCCACCAGGAGGGGA,TCCCCTCCTGGTGGCTTGGA,NGG,57,2:3 | 3:54,0.50192,0.0925385,4,NC_000004.12:15722022-15722044,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.0,GAAGTTCCAAGCCACCAGGA,TCCTGGTGGCTTGGAACTTC,NGG,22,2:2 | 3:20,0.656923,0.198947,1,NC_000004.12:15722027-15722049,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.1,AAGTTCCAAGCCACCAGGAG,CTCCTGGTGGCTTGGAACTT,NGG,27,2:0 | 3:27,0.599495,0.343418,2,NC_000004.12:15722026-15722048,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.2,TGAAGTTCCAAGCCACCAGG,CCTGGTGGCTTGGAACTTCA,NGG,43,2:2 | 3:41,0.674281,0.226414,3,NC_000004.12:15722028-15722050,-,
+rs9291637,chr4:15722022-15722052,chr4:15722022-15722052.3,TCCAAGCCACCAGGAGGGGA,TCCCCTCCTGGTGGCTTGGA,NGG,57,2:3 | 3:54,0.50192,0.0925385,4,NC_000004.12:15722022-15722044,-,
+rs1430961,chr4:89631753-89631783,chr4:89631753-89631783.0,CTCCATTCAACTATTACTCA,TGAGTAATAGTTGAATGGAG,NGG,21,2:0 | 3:21,0.502226,0.28123,1,NC_000004.12:89631761-89631783,-,
+rs1430961,chr4:89631753-89631783,chr4:89631753-89631783.1,AACCTTGAGTAATAGTTGAA,AACCTTGAGTAATAGTTGAA,NGG,27,2:0 | 3:27,0.478791,0.195097,2,NC_000004.12:89631759-89631781,+,
+rs1430961,chr4:89631753-89631783,chr4:89631753-89631783.0,CTCCATTCAACTATTACTCA,TGAGTAATAGTTGAATGGAG,NGG,21,2:0 | 3:21,0.502226,0.28123,1,NC_000004.12:89631761-89631783,-,
+rs1430961,chr4:89631753-89631783,chr4:89631753-89631783.1,AACCTTGAGTAATAGTTGAA,AACCTTGAGTAATAGTTGAA,NGG,27,2:0 | 3:27,0.478791,0.195097,2,NC_000004.12:89631759-89631781,+,
+rs356162,chr4:89775990-89776020,chr4:89775990-89776020.0,AATATCTGTTATTGGTACTG,CAGTACCAATAACAGATATT,NGG,30,2:6 | 3:24,0.693501,0.239941,1,NC_000004.12:89775994-89776016,-,
+rs3775434,chr4:89781614-89781644,chr4:89781614-89781644.0,AGTAAATGTGAGCTGCAATC,GATTGCAGCTCACATTTACT,NGG,21,2:0 | 3:21,0.45527,0.357212,1,NC_000004.12:89781616-89781638,-,
+rs143202663,chr6:40897485-40897515,chr6:40897485-40897515.0,CATACGTCTAGAGCCACCCC,CATACGTCTAGAGCCACCCC,NGG,3,2:0 | 3:3,0.673258,0.452072,1,NC_000006.12:40897493-40897515,+,
+rs143332484,chr6:41161453-41161483,chr6:41161453-41161483.0,GTGCTGACCACACGCTGGCA,GTGCTGACCACACGCTGGCA,NGG,11,2:0 | 3:11,0.451294,0.472599,1,NC_000006.12:41161457-41161479,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+rs143332484,chr6:41161453-41161483,chr6:41161453-41161483.1,TGCTGACCACACGCTGGCAT,TGCTGACCACACGCTGGCAT,NGG,16,2:0 | 3:16,0.434833,0.357426,2,NC_000006.12:41161458-41161480,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+rs143332484,chr6:41161453-41161483,chr6:41161453-41161483.0,GTGCTGACCACACGCTGGCA,GTGCTGACCACACGCTGGCA,NGG,11,2:0 | 3:11,0.451294,0.472599,1,NC_000006.12:41161457-41161479,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+rs143332484,chr6:41161453-41161483,chr6:41161453-41161483.1,TGCTGACCACACGCTGGCAT,TGCTGACCACACGCTGGCAT,NGG,16,2:0 | 3:16,0.434833,0.357426,2,NC_000006.12:41161458-41161480,+,"triggering receptor expressed on myeloid cells 2, transcript variant 2"
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,ATTCTTGGTTGGGGATTGAG,ATTCTTGGTTGGGGATTGAG,NGG,41,2:1 | 3:40,0.496252,0.112747,1,NC_000008.11:16840062-16840084,+,
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,ATTCTTGGTTGGGGATTGAG,ATTCTTGGTTGGGGATTGAG,NGG,41,2:1 | 3:40,0.496252,0.112747,1,NC_000008.11:16840062-16840084,+,
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,ATTCTTGGTTGGGGATTGAG,ATTCTTGGTTGGGGATTGAG,NGG,41,2:1 | 3:40,0.496252,0.112747,1,NC_000008.11:16840062-16840084,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.0,TCCCCCTACATGCCAGTGAA,TTCACTGGCATGTAGGGGGA,NGG,15,2:2 | 3:13,0.592527,0.261018,1,NC_000008.11:27369261-27369283,-,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.1,GTCCCCCTACATGCCAGTGA,TCACTGGCATGTAGGGGGAC,NGG,15,2:0 | 3:15,0.545018,0.246548,2,NC_000008.11:27369262-27369284,-,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.2,GATCCCTTCACTGGCATGTA,GATCCCTTCACTGGCATGTA,NGG,17,2:0 | 3:17,0.431524,0.347624,3,NC_000008.11:27369258-27369280,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.3,ATCCCTTCACTGGCATGTAG,ATCCCTTCACTGGCATGTAG,NGG,30,2:0 | 3:30,0.605535,0.245238,4,NC_000008.11:27369259-27369281,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.4,GGATCCCTTCACTGGCATGT,GGATCCCTTCACTGGCATGT,NGG,31,2:0 | 3:31,0.522998,0.211116,5,NC_000008.11:27369257-27369279,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.0,TCCCCCTACATGCCAGTGAA,TTCACTGGCATGTAGGGGGA,NGG,15,2:2 | 3:13,0.592527,0.261018,1,NC_000008.11:27369261-27369283,-,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.1,GTCCCCCTACATGCCAGTGA,TCACTGGCATGTAGGGGGAC,NGG,15,2:0 | 3:15,0.545018,0.246548,2,NC_000008.11:27369262-27369284,-,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.2,GATCCCTTCACTGGCATGTA,GATCCCTTCACTGGCATGTA,NGG,17,2:0 | 3:17,0.431524,0.347624,3,NC_000008.11:27369258-27369280,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.3,ATCCCTTCACTGGCATGTAG,ATCCCTTCACTGGCATGTAG,NGG,30,2:0 | 3:30,0.605535,0.245238,4,NC_000008.11:27369259-27369281,+,
+rs755951,chr8:27369257-27369287,chr8:27369257-27369287.4,GGATCCCTTCACTGGCATGT,GGATCCCTTCACTGGCATGT,NGG,31,2:0 | 3:31,0.522998,0.211116,5,NC_000008.11:27369257-27369279,+,
+rs2640724,chr8:27558043-27558073,chr8:27558043-27558073.0,CTTGTGTTGGCCACAGCCCC,CTTGTGTTGGCCACAGCCCC,NGG,46,2:3 | 3:43,0.213663,0.181998,1,NC_000008.11:27558051-27558073,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.0,TGGAATGCTCCTGTCCTCGA,TCGAGGACAGGAGCATTCCA,NGG,6,2:0 | 3:6,0.564438,0.74068,1,NC_000008.11:27572975-27572997,-,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.1,CGAGGACAGGAGCATTCCAC,CGAGGACAGGAGCATTCCAC,NGG,8,2:0 | 3:8,0.528797,0.634385,2,NC_000008.11:27572979-27573001,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.2,TCGAGGACAGGAGCATTCCA,TCGAGGACAGGAGCATTCCA,NGG,13,2:2 | 3:11,0.569691,0.273222,3,NC_000008.11:27572978-27573000,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.0,TGGAATGCTCCTGTCCTCGA,TCGAGGACAGGAGCATTCCA,NGG,6,2:0 | 3:6,0.564438,0.74068,1,NC_000008.11:27572975-27572997,-,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.1,CGAGGACAGGAGCATTCCAC,CGAGGACAGGAGCATTCCAC,NGG,8,2:0 | 3:8,0.528797,0.634385,2,NC_000008.11:27572979-27573001,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.2,TCGAGGACAGGAGCATTCCA,TCGAGGACAGGAGCATTCCA,NGG,13,2:2 | 3:11,0.569691,0.273222,3,NC_000008.11:27572978-27573000,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.0,TGGAATGCTCCTGTCCTCGA,TCGAGGACAGGAGCATTCCA,NGG,6,2:0 | 3:6,0.564438,0.74068,1,NC_000008.11:27572975-27572997,-,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.1,CGAGGACAGGAGCATTCCAC,CGAGGACAGGAGCATTCCAC,NGG,8,2:0 | 3:8,0.528797,0.634385,2,NC_000008.11:27572979-27573001,+,
+rs7831810,chr8:27572973-27573003,chr8:27572973-27573003.2,TCGAGGACAGGAGCATTCCA,TCGAGGACAGGAGCATTCCA,NGG,13,2:2 | 3:11,0.569691,0.273222,3,NC_000008.11:27572978-27573000,+,
+rs4732729,chr8:27603959-27603989,chr8:27603959-27603989.0,CAGAATCACCGGGGAGTCCC,CAGAATCACCGGGGAGTCCC,NGG,36,2:0 | 3:36,0.349239,0.198049,1,NC_000008.11:27603967-27603989,+,
+rs4732729,chr8:27603959-27603989,chr8:27603959-27603989.0,CAGAATCACCGGGGAGTCCC,CAGAATCACCGGGGAGTCCC,NGG,36,2:0 | 3:36,0.349239,0.198049,1,NC_000008.11:27603967-27603989,+,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.0,GACATTGAAAGCCCACCTCT,AGAGGTGGGCTTTCAATGTC,NGG,16,2:0 | 3:16,0.478053,0.39443,1,NC_000008.11:27632431-27632453,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.1,ACATTGAAAGCCCACCTCTT,AAGAGGTGGGCTTTCAATGT,NGG,25,2:1 | 3:24,0.414887,0.315446,2,NC_000008.11:27632430-27632452,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.2,CATTGAAAGCCCACCTCTTG,CAAGAGGTGGGCTTTCAATG,NGG,27,2:3 | 3:24,0.545741,0.311931,3,NC_000008.11:27632429-27632451,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.3,AAGAGGTGGGCTTTCAATGT,AAGAGGTGGGCTTTCAATGT,NGG,37,2:2 | 3:35,0.576364,0.322885,4,NC_000008.11:27632433-27632455,+,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.0,GACATTGAAAGCCCACCTCT,AGAGGTGGGCTTTCAATGTC,NGG,16,2:0 | 3:16,0.478053,0.39443,1,NC_000008.11:27632431-27632453,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.1,ACATTGAAAGCCCACCTCTT,AAGAGGTGGGCTTTCAATGT,NGG,25,2:1 | 3:24,0.414887,0.315446,2,NC_000008.11:27632430-27632452,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.2,CATTGAAAGCCCACCTCTTG,CAAGAGGTGGGCTTTCAATG,NGG,27,2:3 | 3:24,0.545741,0.311931,3,NC_000008.11:27632429-27632451,-,
+rs485902,chr8:27632426-27632456,chr8:27632426-27632456.3,AAGAGGTGGGCTTTCAATGT,AAGAGGTGGGCTTTCAATGT,NGG,37,2:2 | 3:35,0.576364,0.322885,4,NC_000008.11:27632433-27632455,+,
+rs112136718,chr8:143868121-143868151,chr8:143868121-143868151.0,GTCGAAGTAGCCGCAGCGGT,GTCGAAGTAGCCGCAGCGGT,NGG,16,2:5 | 3:11,0.645633,0.41051,1,NC_000008.11:143868121-143868143,+,"epiplakin 1, transcript variant X2"
+rs112136718,chr8:143868121-143868151,chr8:143868121-143868151.0,GTCGAAGTAGCCGCAGCGGT,GTCGAAGTAGCCGCAGCGGT,NGG,16,2:5 | 3:11,0.645633,0.41051,1,NC_000008.11:143868121-143868143,+,"epiplakin 1, transcript variant X2"
+rs139185008,chr9:27491928-27491958,chr9:27491928-27491958.0,TTTGATATCACTACTTTTAT,TTTGATATCACTACTTTTAT,NGG,77,2:0 | 3:77,0.120513,0.122023,1,NC_000009.12:27491930-27491952,+,
+rs2484314,chr9:27511270-27511300,chr9:27511270-27511300.0,TAACAGTTTAATAGAAAATC,TAACAGTTTAATAGAAAATC,NGG,94,2:1 | 3:93,0.369319,0.0828511,1,NC_000009.12:27511278-27511300,+,
+rs7912495,chr10:11676698-11676728,chr10:11676698-11676728.0,GAAGTGCTTACCGCATATCC,GAAGTGCTTACCGCATATCC,NGG,3,2:0 | 3:3,0.5317,0.566244,1,NC_000010.11:11676700-11676722,+,
+rs7912495,chr10:11676698-11676728,chr10:11676698-11676728.0,GAAGTGCTTACCGCATATCC,GAAGTGCTTACCGCATATCC,NGG,3,2:0 | 3:3,0.5317,0.566244,1,NC_000010.11:11676700-11676722,+,
+rs188789342,chr10:119612800-119612830,chr10:119612800-119612830.0,CAGGCGCCCGCCACCTGTTC,GAACAGGTGGCGGGCGCCTG,NGG,2708,2:53 | 3:2655,0.287138,0.00641668,1,NC_000010.11:119612803-119612825,-,
+rs10769263,chr11:47395616-47395646,chr11:47395616-47395646.0,TCATGGCTATAATAAATCAA,TCATGGCTATAATAAATCAA,NGG,60,2:3 | 3:57,0.513797,0.144882,1,NC_000011.10:47395624-47395646,+,"Spi-1 proto-oncogene, transcript variant X1"
+rs55661415,chr11:60184827-60184857,chr11:60184827-60184857.0,TTCTACCAACCTAACTACAA,TTCTACCAACCTAACTACAA,NGG,15,2:0 | 3:15,0.653775,0.399656,1,NC_000011.10:60184833-60184855,+,
+rs55661415,chr11:60184827-60184857,chr11:60184827-60184857.1,ATTCTACCAACCTAACTACA,ATTCTACCAACCTAACTACA,NGG,30,2:0 | 3:30,0.550719,0.220943,2,NC_000011.10:60184832-60184854,+,
+rs67598967,chr11:86132139-86132169,chr11:86132139-86132169.0,TGACCAGGCCCGGCCGGGCA,TGCCCGGCCGGGCCTGGTCA,NGG,65,2:6 | 3:59,0.526278,0.0755237,1,NC_000011.10:86132147-86132169,-,
+rs11218343,chr11:121564862-121564892,chr11:121564862-121564892.0,TAAAATACTCTATTACCGGC,GCCGGTAATAGAGTATTTTA,NGG,13,2:0 | 3:13,0.47751,0.238824,1,NC_000011.10:121564867-121564889,-,
+rs11218343,chr11:121564862-121564892,chr11:121564862-121564892.1,AAAATACTCTATTACCGGCT,AGCCGGTAATAGAGTATTTT,NGG,31,2:0 | 3:31,0.51914,0.156044,2,NC_000011.10:121564866-121564888,-,
+rs11218343,chr11:121564862-121564892,chr11:121564862-121564892.0,TAAAATACTCTATTACCGGC,GCCGGTAATAGAGTATTTTA,NGG,13,2:0 | 3:13,0.47751,0.238824,1,NC_000011.10:121564867-121564889,-,
+rs11218343,chr11:121564862-121564892,chr11:121564862-121564892.1,AAAATACTCTATTACCGGCT,AGCCGGTAATAGAGTATTTT,NGG,31,2:0 | 3:31,0.51914,0.156044,2,NC_000011.10:121564866-121564888,-,
+rs11223616,chr11:133902927-133902957,chr11:133902927-133902957.0,TGGGGTTTTCATATAAGCCA,TGGCTTATATGAAAACCCCA,NGG,25,2:0 | 3:25,0.527661,0.273097,1,NC_000011.10:133902933-133902955,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902927-133902957,chr11:133902927-133902957.1,GTTTTCATATAAGCCATGGG,CCCATGGCTTATATGAAAAC,NGG,31,2:0 | 3:31,0.689368,0.279263,2,NC_000011.10:133902929-133902951,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902927-133902957,chr11:133902927-133902957.2,GGGGTTTTCATATAAGCCAT,ATGGCTTATATGAAAACCCC,NGG,35,2:2 | 3:33,0.589318,0.213089,3,NC_000011.10:133902932-133902954,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902927-133902957,chr11:133902927-133902957.3,TTTCATATAAGCCATGGGAG,CTCCCATGGCTTATATGAAA,NGG,38,2:0 | 3:38,0.537071,0.164118,4,NC_000011.10:133902927-133902949,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902927-133902957,chr11:133902927-133902957.4,TTTTCATATAAGCCATGGGA,TCCCATGGCTTATATGAAAA,NGG,48,2:1 | 3:47,0.586167,0.139321,5,NC_000011.10:133902928-133902950,-,immunoglobulin superfamily member 9B
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.0,GTTTGGTTTCCCCCTGTATT,AATACAGGGGGAAACCAAAC,NGG,21,2:1 | 3:20,0.19908,0.349993,1,NC_000011.10:133949510-133949532,-,
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.1,TTTGGTTTCCCCCTGTATTT,AAATACAGGGGGAAACCAAA,NGG,130,2:1 | 3:129,0.312179,0.0515104,2,NC_000011.10:133949509-133949531,-,
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.0,GTTTGGTTTCCCCCTGTATT,AATACAGGGGGAAACCAAAC,NGG,21,2:1 | 3:20,0.19908,0.349993,1,NC_000011.10:133949510-133949532,-,
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.1,TTTGGTTTCCCCCTGTATTT,AAATACAGGGGGAAACCAAA,NGG,130,2:1 | 3:129,0.312179,0.0515104,2,NC_000011.10:133949509-133949531,-,
+rs1491942,chr12:40226990-40227020,chr12:40226990-40227020.0,AGTGCTATACTTGACAACCC,AGTGCTATACTTGACAACCC,NGG,9,2:0 | 3:9,0.701704,0.591361,1,NC_000012.12:40226992-40227014,+,
+rs1491942,chr12:40226990-40227020,chr12:40226990-40227020.1,GTGCTATACTTGACAACCCA,GTGCTATACTTGACAACCCA,NGG,14,2:0 | 3:14,0.614097,0.49424,2,NC_000012.12:40226993-40227015,+,
+rs1491942,chr12:40226990-40227020,chr12:40226990-40227020.2,TGCTATACTTGACAACCCAG,TGCTATACTTGACAACCCAG,NGG,14,2:0 | 3:14,0.749446,0.359774,3,NC_000012.12:40226994-40227016,+,
+rs75505347,chr12:40491731-40491761,chr12:40491731-40491761.0,ATTCGTCTTACGATCATAAT,ATTATGATCGTAAGACGAAT,NGG,0,2:0 | 3:0,0.191562,0.995923,1,NC_000012.12:40491736-40491758,-,
+rs1002038473,chr12:41036413-41036443,chr12:41036413-41036443.0,TTAGAGAACCAAGCCAAATG,TTAGAGAACCAAGCCAAATG,NGG,107,2:5 | 3:102,0.601051,0.0924406,1,NC_000012.12:41036416-41036438,+,
+rs1002038473,chr12:41036413-41036443,chr12:41036413-41036443.0,TTAGAGAACCAAGCCAAATG,TTAGAGAACCAAGCCAAATG,NGG,107,2:5 | 3:102,0.601051,0.0924406,1,NC_000012.12:41036416-41036438,+,
+rs764179564,chr12:41195597-41195627,chr12:41195597-41195627.0,ATAAATCAAAGTTTTTTTTT,AAAAAAAAACTTTGATTTAT,NGG,551,2:35 | 3:516,0.124,0.0157566,1,NC_000012.12:41195603-41195625,-,
+rs764179564,chr12:41195597-41195627,chr12:41195597-41195627.0,ATAAATCAAAGTTTTTTTTT,AAAAAAAAACTTTGATTTAT,NGG,551,2:35 | 3:516,0.124,0.0157566,1,NC_000012.12:41195603-41195625,-,
+rs117027576,chr12:56922803-56922833,chr12:56922803-56922833.0,GTGTTAAGTTACTTATTCTA,GTGTTAAGTTACTTATTCTA,NGG,48,2:0 | 3:48,0.29911,0.16097,1,NC_000012.12:56922804-56922826,+,
+rs41292019,chr12:64455920-64455950,chr12:64455920-64455950.0,GCTACTGCAAATGTCTTTCG,GCTACTGCAAATGTCTTTCG,NGG,12,2:0 | 3:12,0.541531,0.413703,1,NC_000012.12:64455925-64455947,+,"TANK binding kinase 1, transcript variant X3"
+rs73124200,chr12:64555452-64555482,chr12:64555452-64555482.0,ATAGAAAGCCTCTACCGGCC,ATAGAAAGCCTCTACCGGCC,NGG,12,2:0 | 3:12,0.613849,0.417137,1,NC_000012.12:64555452-64555474,+,
+rs73124200,chr12:64555452-64555482,chr12:64555452-64555482.1,AAGCCTCTACCGGCCGGGCA,AAGCCTCTACCGGCCGGGCA,NGG,90,2:5 | 3:85,0.566983,0.0518375,2,NC_000012.12:64555457-64555479,+,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.0,CCACGCTTCAGCTCTCTTGC,CCACGCTTCAGCTCTCTTGC,NGG,27,2:0 | 3:27,0.334898,0.162426,1,NC_000014.9:52845271-52845293,+,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.1,CAGCAAGAGAGCTGAAGCGT,ACGCTTCAGCTCTCTTGCTG,NGG,31,2:1 | 3:30,0.623894,0.188239,2,NC_000014.9:52845270-52845292,-,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.2,CCAGCAAGAGAGCTGAAGCG,CGCTTCAGCTCTCTTGCTGG,NGG,36,2:2 | 3:34,0.612947,0.175732,3,NC_000014.9:52845271-52845293,-,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.0,CCACGCTTCAGCTCTCTTGC,CCACGCTTCAGCTCTCTTGC,NGG,27,2:0 | 3:27,0.334898,0.162426,1,NC_000014.9:52845271-52845293,+,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.1,CAGCAAGAGAGCTGAAGCGT,ACGCTTCAGCTCTCTTGCTG,NGG,31,2:1 | 3:30,0.623894,0.188239,2,NC_000014.9:52845270-52845292,-,
+rs12589020,chr14:52845268-52845298,chr14:52845268-52845298.2,CCAGCAAGAGAGCTGAAGCG,CGCTTCAGCTCTCTTGCTGG,NGG,36,2:2 | 3:34,0.612947,0.175732,3,NC_000014.9:52845271-52845293,-,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.0,CCCCTCTGTCCGAGCCTGGC,CCCCTCTGTCCGAGCCTGGC,NGG,25,2:0 | 3:25,0.275128,0.241697,1,NC_000014.9:52951107-52951129,+,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.1,CCAGCCAGGCTCGGACAGAG,CTCTGTCCGAGCCTGGCTGG,NGG,36,2:0 | 3:36,0.635084,0.201945,2,NC_000014.9:52951107-52951129,-,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.2,TGTCCGAGCCTGGCTGGGCT,TGTCCGAGCCTGGCTGGGCT,NGG,51,2:0 | 3:51,0.356169,0.133692,3,NC_000014.9:52951113-52951135,+,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.3,CTGTCCGAGCCTGGCTGGGC,CTGTCCGAGCCTGGCTGGGC,NGG,56,2:2 | 3:54,0.213404,0.0788235,4,NC_000014.9:52951112-52951134,+,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.0,CCCCTCTGTCCGAGCCTGGC,CCCCTCTGTCCGAGCCTGGC,NGG,25,2:0 | 3:25,0.275128,0.241697,1,NC_000014.9:52951107-52951129,+,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.1,CCAGCCAGGCTCGGACAGAG,CTCTGTCCGAGCCTGGCTGG,NGG,36,2:0 | 3:36,0.635084,0.201945,2,NC_000014.9:52951107-52951129,-,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.2,TGTCCGAGCCTGGCTGGGCT,TGTCCGAGCCTGGCTGGGCT,NGG,51,2:0 | 3:51,0.356169,0.133692,3,NC_000014.9:52951113-52951135,+,
+rs147767029,chr14:52951105-52951135,chr14:52951105-52951135.3,CTGTCCGAGCCTGGCTGGGC,CTGTCCGAGCCTGGCTGGGC,NGG,56,2:2 | 3:54,0.213404,0.0788235,4,NC_000014.9:52951112-52951134,+,
+rs3098199,chr15:50529045-50529075,chr15:50529045-50529075.0,CTCCATGCTTTCTTTCCTTC,CTCCATGCTTTCTTTCCTTC,NGG,164,2:15 | 3:149,0.279124,0.0512295,1,NC_000015.10:50529046-50529068,+,
+rs117618017,chr15:63277687-63277717,chr15:63277687-63277717.0,ACGCAACGGCTCGGTGGCGA,TCGCCACCGAGCCGTTGCGT,NGG,1,2:0 | 3:1,0.491463,0.50564,1,NC_000015.10:63277694-63277716,-,"aph-1 homolog B, gamma-secretase subunit, transcript variant X1"
+rs8050588,chr16:30926462-30926492,chr16:30926462-30926492.0,AGTAGGGATCGGGGAAGCAT,AGTAGGGATCGGGGAAGCAT,NGG,22,2:3 | 3:19,0.524281,0.228575,1,NC_000016.10:30926468-30926490,+,
+rs8050588,chr16:30926462-30926492,chr16:30926462-30926492.1,CAGTAGGGATCGGGGAAGCA,CAGTAGGGATCGGGGAAGCA,NGG,34,2:1 | 3:33,0.475818,0.17063,2,NC_000016.10:30926467-30926489,+,
+rs1141534,chr19:1032674-1032704,chr19:1032674-1032704.0,TCGCCCTGGCGGGGAAGGTG,TCGCCCTGGCGGGGAAGGTG,NGG,35,2:4 | 3:31,0.505068,0.165802,1,NC_000019.10:1032680-1032702,+,"calponin 2, transcript variant 4"
+rs1141534,chr19:1032674-1032704,chr19:1032674-1032704.0,TCGCCCTGGCGGGGAAGGTG,TCGCCCTGGCGGGGAAGGTG,NGG,35,2:4 | 3:31,0.505068,0.165802,1,NC_000019.10:1032680-1032702,+,"calponin 2, transcript variant 4"
+rs3764645,chr19:1042794-1042824,chr19:1042794-1042824.0,GGCCGCTGAGGACCTGGCCC,GGCCGCTGAGGACCTGGCCC,NGG,65,2:1 | 3:64,0.479399,0.076691,1,NC_000019.10:1042802-1042824,+,"ATP binding cassette subfamily A member 7, transcript variant X11"
+rs80257887,chr19:44516782-44516812,chr19:44516782-44516812.0,TGTTGAATCCCAACCCCTAG,CTAGGGGTTGGGATTCAACA,NGG,13,2:0 | 3:13,0.63367,0.405722,1,NC_000019.10:44516786-44516808,-,
+rs75161053,chr19:44544847-44544877,chr19:44544847-44544877.0,GATCACCCTGGGTGTAATGC,GCATTACACCCAGGGTGATC,NGG,6,2:0 | 3:6,0.515971,0.650778,1,NC_000019.10:44544848-44544870,-,
+rs203709,chr19:44658282-44658312,chr19:44658282-44658312.0,GGGCTCCAACCTTGTAACCC,GGGCTCCAACCTTGTAACCC,NGG,22,2:0 | 3:22,0.638003,0.356184,1,NC_000019.10:44658287-44658309,+,
+rs203709,chr19:44658282-44658312,chr19:44658282-44658312.1,GGTTACAAGGTTGGAGCCCC,GGGGCTCCAACCTTGTAACC,NGG,28,2:0 | 3:28,0.364217,0.298059,2,NC_000019.10:44658283-44658305,-,
+rs203709,chr19:44658282-44658312,chr19:44658282-44658312.0,GGGCTCCAACCTTGTAACCC,GGGCTCCAACCTTGTAACCC,NGG,22,2:0 | 3:22,0.638003,0.356184,1,NC_000019.10:44658287-44658309,+,
+rs203709,chr19:44658282-44658312,chr19:44658282-44658312.1,GGTTACAAGGTTGGAGCCCC,GGGGCTCCAACCTTGTAACC,NGG,28,2:0 | 3:28,0.364217,0.298059,2,NC_000019.10:44658283-44658305,-,
+rs35385129,chr19:44658905-44658935,chr19:44658905-44658935.0,GTGCTCAATTACGGCAGCTC,GAGCTGCCGTAATTGAGCAC,NGG,12,2:0 | 3:12,0.451213,0.506361,1,NC_000019.10:44658911-44658933,-,
+rs35385129,chr19:44658905-44658935,chr19:44658905-44658935.0,GTGCTCAATTACGGCAGCTC,GAGCTGCCGTAATTGAGCAC,NGG,12,2:0 | 3:12,0.451213,0.506361,1,NC_000019.10:44658911-44658933,-,
+rs111780744,chr19:44663668-44663698,chr19:44663668-44663698.0,AAGCAAGACGCTAAATGAAG,AAGCAAGACGCTAAATGAAG,NGG,34,2:0 | 3:34,0.614684,0.133602,1,NC_000019.10:44663676-44663698,+,"PVR cell adhesion molecule, transcript variant 1"
+rs2289495,chr19:44684014-44684044,chr19:44684014-44684044.0,GGGAAGGGGTCCAGCAGCCG,CGGCTGCTGGACCCCTTCCC,NGG,56,2:0 | 3:56,0.564831,0.0727178,1,NC_000019.10:44684020-44684042,-,"CEA cell adhesion molecule 19, transcript variant 3"
+rs2289495,chr19:44684014-44684044,chr19:44684014-44684044.0,GGGAAGGGGTCCAGCAGCCG,CGGCTGCTGGACCCCTTCCC,NGG,56,2:0 | 3:56,0.564831,0.0727178,1,NC_000019.10:44684020-44684042,-,"CEA cell adhesion molecule 19, transcript variant 3"
+rs2965163,chr19:44697240-44697270,chr19:44697240-44697270.0,GCTCTGAGGCAGGCCCGGCA,GCTCTGAGGCAGGCCCGGCA,NGG,66,2:9 | 3:57,0.567964,0.108176,1,NC_000019.10:44697240-44697262,+,
+rs2965164,chr19:44698766-44698796,chr19:44698766-44698796.0,TCTTATGACCTGCATCCTGA,TCAGGATGCAGGTCATAAGA,NGG,39,2:3 | 3:36,0.536574,0.212502,1,NC_000019.10:44698766-44698788,-,
+rs2965164,chr19:44698766-44698796,chr19:44698766-44698796.0,TCTTATGACCTGCATCCTGA,TCAGGATGCAGGTCATAAGA,NGG,39,2:3 | 3:36,0.536574,0.212502,1,NC_000019.10:44698766-44698788,-,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.0,TTCACCCTGCATGTGGCAGC,GCTGCCACATGCAGGGTGAA,NGG,36,2:1 | 3:35,0.286124,0.185404,1,NC_000019.10:44723880-44723902,-,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.1,ACCCTGCATGTGGCAGCTGG,CCAGCTGCCACATGCAGGGT,NGG,39,2:5 | 3:34,0.5102,0.154711,2,NC_000019.10:44723877-44723899,-,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.2,TCACCCTGCATGTGGCAGCT,AGCTGCCACATGCAGGGTGA,NGG,40,2:1 | 3:39,0.419078,0.200219,3,NC_000019.10:44723879-44723901,-,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.3,GCTGCCACATGCAGGGTGAA,GCTGCCACATGCAGGGTGAA,NGG,50,2:4 | 3:46,0.474436,0.10863,4,NC_000019.10:44723883-44723905,+,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.4,CACCCTGCATGTGGCAGCTG,CAGCTGCCACATGCAGGGTG,NGG,53,2:2 | 3:51,0.407736,0.127428,5,NC_000019.10:44723878-44723900,-,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.5,CTCCCCCAGCTGCCACATGC,CTCCCCCAGCTGCCACATGC,NGG,59,2:2 | 3:57,0.449521,0.153312,6,NC_000019.10:44723875-44723897,+,
+rs150820726,chr19:44723875-44723905,chr19:44723875-44723905.6,TCCCCCAGCTGCCACATGCA,TCCCCCAGCTGCCACATGCA,NGG,61,2:5 | 3:56,0.542966,0.183254,7,NC_000019.10:44723876-44723898,+,
+rs12459810,chr19:44746388-44746418,chr19:44746388-44746418.0,GGGTGGAGGCGAGGTTTGGA,TCCAAACCTCGCCTCCACCC,NGG,75,2:4 | 3:71,0.541726,0.0794209,1,NC_000019.10:44746392-44746414,-,
+rs12459810,chr19:44746388-44746418,chr19:44746388-44746418.1,CTGAGGGTGGAGGCGAGGTT,AACCTCGCCTCCACCCTCAG,NGG,81,2:6 | 3:75,0.328527,0.142043,2,NC_000019.10:44746396-44746418,-,
+rs12459810,chr19:44746388-44746418,chr19:44746388-44746418.2,AGGGTGGAGGCGAGGTTTGG,CCAAACCTCGCCTCCACCCT,NGG,125,2:2 | 3:123,0.469364,0.0869157,3,NC_000019.10:44746393-44746415,-,
+rs2965169,chr19:44747883-44747913,chr19:44747883-44747913.0,TGTGTCTCTGCACTCGTTGG,CCAACGAGTGCAGAGACACA,NGG,13,2:1 | 3:12,0.608654,0.468392,1,NC_000019.10:44747890-44747912,-,"BCL3 transcription coactivator, transcript variant X2"
+rs2965169,chr19:44747883-44747913,chr19:44747883-44747913.1,TTGTGTCTCTGCACTCGTTG,CAACGAGTGCAGAGACACAA,NGG,14,2:0 | 3:14,0.560381,0.587901,2,NC_000019.10:44747891-44747913,-,"BCL3 transcription coactivator, transcript variant X2"
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.0,AGTTTTCCCCGTCTGTGTGA,AGTTTTCCCCGTCTGTGTGA,NGG,26,2:0 | 3:26,0.417625,0.140488,1,NC_000019.10:44750225-44750247,+,
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.1,GTTTTCCCCGTCTGTGTGAT,GTTTTCCCCGTCTGTGTGAT,NGG,29,2:2 | 3:27,0.487454,0.0978013,2,NC_000019.10:44750226-44750248,+,
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.2,CACACAGACGGGGAAAACTG,CAGTTTTCCCCGTCTGTGTG,NGG,44,2:1 | 3:43,0.707197,0.0905963,3,NC_000019.10:44750221-44750243,-,
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.0,AGTTTTCCCCGTCTGTGTGA,AGTTTTCCCCGTCTGTGTGA,NGG,26,2:0 | 3:26,0.417625,0.140488,1,NC_000019.10:44750225-44750247,+,
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.1,GTTTTCCCCGTCTGTGTGAT,GTTTTCCCCGTCTGTGTGAT,NGG,29,2:2 | 3:27,0.487454,0.0978013,2,NC_000019.10:44750226-44750248,+,
+rs10401176,chr19:44750218-44750248,chr19:44750218-44750248.2,CACACAGACGGGGAAAACTG,CAGTTTTCCCCGTCTGTGTG,NGG,44,2:1 | 3:43,0.707197,0.0905963,3,NC_000019.10:44750221-44750243,-,
+rs62117205,chr19:44751993-44752023,chr19:44751993-44752023.0,TGTAAAACTATCACTGGACC,TGTAAAACTATCACTGGACC,NGG,27,2:3 | 3:24,0.581488,0.269655,1,NC_000019.10:44752001-44752023,+,
+rs62117205,chr19:44751993-44752023,chr19:44751993-44752023.1,TATACATGTAAAACTATCAC,TATACATGTAAAACTATCAC,NGG,65,2:3 | 3:62,0.480384,0.127407,2,NC_000019.10:44751995-44752017,+,
+rs62117205,chr19:44751993-44752023,chr19:44751993-44752023.0,TGTAAAACTATCACTGGACC,TGTAAAACTATCACTGGACC,NGG,27,2:3 | 3:24,0.581488,0.269655,1,NC_000019.10:44752001-44752023,+,
+rs62117205,chr19:44751993-44752023,chr19:44751993-44752023.1,TATACATGTAAAACTATCAC,TATACATGTAAAACTATCAC,NGG,65,2:3 | 3:62,0.480384,0.127407,2,NC_000019.10:44751995-44752017,+,
+rs140414737,chr19:44770799-44770829,chr19:44770799-44770829.0,AACTCCGTTCCCAAGGGAGG,AACTCCGTTCCCAAGGGAGG,NGG,18,2:0 | 3:18,0.553652,0.252979,1,NC_000019.10:44770804-44770826,+,
+rs140414737,chr19:44770799-44770829,chr19:44770799-44770829.1,AGAAACTCCGTTCCCAAGGG,AGAAACTCCGTTCCCAAGGG,NGG,38,2:0 | 3:38,0.613232,0.13982,2,NC_000019.10:44770801-44770823,+,
+rs1135062,chr19:44819471-44819501,chr19:44819471-44819501.0,GTCACTCACCGGTGCCGAAG,CTTCGGCACCGGTGAGTGAC,NGG,0,2:0 | 3:0,0.535063,0.980286,1,NC_000019.10:44819477-44819499,-,"basal cell adhesion molecule (Lutheran blood group), transcript variant 2"
+rs28399637,chr19:44820865-44820895,chr19:44820865-44820895.0,TGGAGCACGCCCGTGGGCAC,TGGAGCACGCCCGTGGGCAC,NGG,15,2:0 | 3:15,0.441348,0.455071,1,NC_000019.10:44820869-44820891,+,
+rs1466435,chr19:44839542-44839572,chr19:44839542-44839572.0,ACCAACTTCTCTTTACTTCC,GGAAGTAAAGAGAAGTTGGT,NGG,54,2:5 | 3:49,0.323236,0.0947512,1,NC_000019.10:44839544-44839566,-,
+rs1466435,chr19:44839542-44839572,chr19:44839542-44839572.1,TCCAGGAAGTAAAGAGAAGT,TCCAGGAAGTAAAGAGAAGT,NGG,111,2:14 | 3:97,0.495597,0.0805701,2,NC_000019.10:44839543-44839565,+,
+rs55840414,chr19:44840306-44840336,chr19:44840306-44840336.0,ATAAAACTGCGAACATAGCC,ATAAAACTGCGAACATAGCC,NGG,31,2:0 | 3:31,0.503524,0.236068,1,NC_000019.10:44840312-44840334,+,
+rs41289512,chr19:44848243-44848273,chr19:44848243-44848273.0,CCAAGCTAACAGTAGGCTCA,TGAGCCTACTGTTAGCTTGG,NGG,14,2:0 | 3:14,0.637052,0.301555,1,NC_000019.10:44848251-44848273,-,
+rs41289512,chr19:44848243-44848273,chr19:44848243-44848273.1,CTAACAGTAGGCTCAGGGTC,GACCCTGAGCCTACTGTTAG,NGG,15,2:0 | 3:15,0.543546,0.337077,2,NC_000019.10:44848246-44848268,-,
+rs41289512,chr19:44848243-44848273,chr19:44848243-44848273.2,CCCTGAGCCTACTGTTAGCT,CCCTGAGCCTACTGTTAGCT,NGG,26,2:1 | 3:25,0.425106,0.238931,3,NC_000019.10:44848251-44848273,+,
+rs41289512,chr19:44848243-44848273,chr19:44848243-44848273.3,ACAGTAGGCTCAGGGTCTGG,CCAGACCCTGAGCCTACTGT,NGG,42,2:5 | 3:37,0.4847,0.116756,4,NC_000019.10:44848243-44848265,-,
+rs7255063,chr19:44849146-44849176,chr19:44849146-44849176.0,GTCAGAGACACGTGTAGGAA,GTCAGAGACACGTGTAGGAA,NGG,18,2:0 | 3:18,0.523989,0.49982,1,NC_000019.10:44849149-44849171,+,
+rs365653,chr19:44858373-44858403,chr19:44858373-44858403.0,CCAACATGGGCGATAGAATG,CATTCTATCGCCCATGTTGG,NGG,118,2:1 | 3:117,0.573555,0.0785796,1,NC_000019.10:44858373-44858395,-,
+rs365653,chr19:44858373-44858403,chr19:44858373-44858403.1,CCTCATTCTATCGCCCATGT,CCTCATTCTATCGCCCATGT,NGG,299,2:11 | 3:288,0.558139,0.0215786,2,NC_000019.10:44858373-44858395,+,
+rs12978931,chr19:44860427-44860457,chr19:44860427-44860457.0,CTCACTGCAAACCGTCTCTG,CAGAGACGGTTTGCAGTGAG,NGG,31,2:0 | 3:31,0.644271,0.299969,1,NC_000019.10:44860435-44860457,-,
+rs12978931,chr19:44860427-44860457,chr19:44860427-44860457.0,CTCACTGCAAACCGTCTCTG,CAGAGACGGTTTGCAGTGAG,NGG,31,2:0 | 3:31,0.644271,0.299969,1,NC_000019.10:44860435-44860457,-,
+rs41290100,chr19:44867668-44867698,chr19:44867668-44867698.0,ATGGGAGCTGGGCGCGTTCC,ATGGGAGCTGGGCGCGTTCC,NGG,10,2:0 | 3:10,0.317384,0.38124,1,NC_000019.10:44867670-44867692,+,
+rs41290100,chr19:44867668-44867698,chr19:44867668-44867698.1,AGCTGGGCGCGTTCCAGGAA,AGCTGGGCGCGTTCCAGGAA,NGG,31,2:0 | 3:31,0.456304,0.222805,2,NC_000019.10:44867675-44867697,+,
+rs41290102,chr19:44867915-44867945,chr19:44867915-44867945.0,TAGAAGGGAGCTGGGACGAG,TAGAAGGGAGCTGGGACGAG,NGG,51,2:0 | 3:51,0.44217,0.209815,1,NC_000019.10:44867915-44867937,+,
+rs41290102,chr19:44867915-44867945,chr19:44867915-44867945.1,AGAAGGGAGCTGGGACGAGA,AGAAGGGAGCTGGGACGAGA,NGG,101,2:6 | 3:95,0.475561,0.0581701,2,NC_000019.10:44867916-44867938,+,
+rs41290102,chr19:44867915-44867945,chr19:44867915-44867945.2,GAAGGGAGCTGGGACGAGAG,GAAGGGAGCTGGGACGAGAG,NGG,118,2:6 | 3:112,0.573264,0.10264,3,NC_000019.10:44867917-44867939,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.0,CTGTACGCTGTGAGTGTATC,CTGTACGCTGTGAGTGTATC,NGG,0,2:0 | 3:0,0.304099,1.0,1,NC_000019.10:44872141-44872163,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.1,TGTACGCTGTGAGTGTATCG,TGTACGCTGTGAGTGTATCG,NGG,2,2:0 | 3:2,0.596905,0.843431,2,NC_000019.10:44872142-44872164,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.2,GTACGCTGTGAGTGTATCGG,GTACGCTGTGAGTGTATCGG,NGG,2,2:0 | 3:2,0.679598,0.812772,3,NC_000019.10:44872143-44872165,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.3,TCTGTACGCTGTGAGTGTAT,TCTGTACGCTGTGAGTGTAT,NGG,8,2:0 | 3:8,0.430075,0.374311,4,NC_000019.10:44872140-44872162,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.0,CTGTACGCTGTGAGTGTATC,CTGTACGCTGTGAGTGTATC,NGG,0,2:0 | 3:0,0.304099,1.0,1,NC_000019.10:44872141-44872163,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.1,TGTACGCTGTGAGTGTATCG,TGTACGCTGTGAGTGTATCG,NGG,2,2:0 | 3:2,0.596905,0.843431,2,NC_000019.10:44872142-44872164,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.2,GTACGCTGTGAGTGTATCGG,GTACGCTGTGAGTGTATCGG,NGG,2,2:0 | 3:2,0.679598,0.812772,3,NC_000019.10:44872143-44872165,+,
+rs71352236,chr19:44872140-44872170,chr19:44872140-44872170.3,TCTGTACGCTGTGAGTGTAT,TCTGTACGCTGTGAGTGTAT,NGG,8,2:0 | 3:8,0.430075,0.374311,4,NC_000019.10:44872140-44872162,+,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.0,TCCTCTTTGGCTCCGTGCCT,AGGCACGGAGCCAAAGAGGA,NGG,13,2:2 | 3:11,0.281656,0.308599,1,NC_000019.10:44874879-44874901,-,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.1,CTCTTTGGCTCCGTGCCTTG,CAAGGCACGGAGCCAAAGAG,NGG,17,2:0 | 3:17,0.504325,0.25066,2,NC_000019.10:44874877-44874899,-,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.2,TTGGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCCAA,NGG,26,2:0 | 3:26,0.39674,0.256884,3,NC_000019.10:44874873-44874895,-,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.3,CCCAAGGCACGGAGCCAAAG,CCCAAGGCACGGAGCCAAAG,NGG,28,2:0 | 3:28,0.527442,0.185455,4,NC_000019.10:44874878-44874900,+,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.4,CCTCTTTGGCTCCGTGCCTT,AAGGCACGGAGCCAAAGAGG,NGG,38,2:0 | 3:38,0.255401,0.224494,5,NC_000019.10:44874878-44874900,-,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.0,GGGAAAACAGACACCTCTTC,GGGAAAACAGACACCTCTTC,NGG,73,2:3 | 3:70,0.401742,0.144003,1,NC_000019.10:44875791-44875813,+,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.1,AAGAGGTGTCTGTTTTCCCT,AGGGAAAACAGACACCTCTT,NGG,74,2:5 | 3:69,0.429642,0.0923168,2,NC_000019.10:44875787-44875809,-,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.0,GGGAAAACAGACACCTCTTC,GGGAAAACAGACACCTCTTC,NGG,73,2:3 | 3:70,0.401742,0.144003,1,NC_000019.10:44875791-44875813,+,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.1,AAGAGGTGTCTGTTTTCCCT,AGGGAAAACAGACACCTCTT,NGG,74,2:5 | 3:69,0.429642,0.0923168,2,NC_000019.10:44875787-44875809,-,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.0,GGGAAAACAGACACCTCTTC,GGGAAAACAGACACCTCTTC,NGG,73,2:3 | 3:70,0.401742,0.144003,1,NC_000019.10:44875791-44875813,+,
+rs387976,chr19:44875787-44875817,chr19:44875787-44875817.1,AAGAGGTGTCTGTTTTCCCT,AGGGAAAACAGACACCTCTT,NGG,74,2:5 | 3:69,0.429642,0.0923168,2,NC_000019.10:44875787-44875809,-,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.0,GTTGCTGGGGGTCTCGGGAG,GTTGCTGGGGGTCTCGGGAG,NGG,32,2:0 | 3:32,0.341265,0.265947,1,NC_000019.10:44879403-44879425,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.1,GGTTGCTGGGGGTCTCGGGA,GGTTGCTGGGGGTCTCGGGA,NGG,48,2:0 | 3:48,0.468292,0.136766,2,NC_000019.10:44879402-44879424,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.2,GCTGGGGGTCTCGGGAGGGG,GCTGGGGGTCTCGGGAGGGG,NGG,175,2:8 | 3:167,0.347365,0.0425738,3,NC_000019.10:44879406-44879428,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.3,CTGGGGGTCTCGGGAGGGGA,CTGGGGGTCTCGGGAGGGGA,NGG,198,2:12 | 3:186,0.438563,0.0371564,4,NC_000019.10:44879407-44879429,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.0,GTTGCTGGGGGTCTCGGGAG,GTTGCTGGGGGTCTCGGGAG,NGG,32,2:0 | 3:32,0.341265,0.265947,1,NC_000019.10:44879403-44879425,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.1,GGTTGCTGGGGGTCTCGGGA,GGTTGCTGGGGGTCTCGGGA,NGG,48,2:0 | 3:48,0.468292,0.136766,2,NC_000019.10:44879402-44879424,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.2,GCTGGGGGTCTCGGGAGGGG,GCTGGGGGTCTCGGGAGGGG,NGG,175,2:8 | 3:167,0.347365,0.0425738,3,NC_000019.10:44879406-44879428,+,
+rs41290120,chr19:44879402-44879432,chr19:44879402-44879432.3,CTGGGGGTCTCGGGAGGGGA,CTGGGGGTCTCGGGAGGGGA,NGG,198,2:12 | 3:186,0.438563,0.0371564,4,NC_000019.10:44879407-44879429,+,
+rs11673139,chr19:44879764-44879794,chr19:44879764-44879794.0,GGCTGTCGTGGGACCCAGTA,GGCTGTCGTGGGACCCAGTA,NGG,39,2:3 | 3:36,0.484192,0.20077,1,NC_000019.10:44879768-44879790,+,
+rs144261139,chr19:44882083-44882113,chr19:44882083-44882113.0,ATGTCCCCTGCCCATGGGAG,ATGTCCCCTGCCCATGGGAG,NGG,49,2:2 | 3:47,0.519807,0.108391,1,NC_000019.10:44882087-44882109,+,
+rs144261139,chr19:44882083-44882113,chr19:44882083-44882113.1,ATGTCCTCTCCCATGGGCAG,CTGCCCATGGGAGAGGACAT,NGG,49,2:3 | 3:46,0.502604,0.11867,2,NC_000019.10:44882091-44882113,-,
+rs144261139,chr19:44882083-44882113,chr19:44882083-44882113.0,ATGTCCCCTGCCCATGGGAG,ATGTCCCCTGCCCATGGGAG,NGG,49,2:2 | 3:47,0.519807,0.108391,1,NC_000019.10:44882087-44882109,+,
+rs144261139,chr19:44882083-44882113,chr19:44882083-44882113.1,ATGTCCTCTCCCATGGGCAG,CTGCCCATGGGAGAGGACAT,NGG,49,2:3 | 3:46,0.502604,0.11867,2,NC_000019.10:44882091-44882113,-,
+rs76692773,chr19:44890938-44890968,chr19:44890938-44890968.0,GGGCGATGCCTCAGCGGGCG,GGGCGATGCCTCAGCGGGCG,NGG,9,2:0 | 3:9,0.364181,0.692746,1,NC_000019.10:44890945-44890967,+,
+rs76692773,chr19:44890938-44890968,chr19:44890938-44890968.1,GAGGCGGGGCGATGCCTCAG,GAGGCGGGGCGATGCCTCAG,NGG,20,2:1 | 3:19,0.64435,0.301062,2,NC_000019.10:44890939-44890961,+,
+rs76692773,chr19:44890938-44890968,chr19:44890938-44890968.2,AGGCGGGGCGATGCCTCAGC,AGGCGGGGCGATGCCTCAGC,NGG,23,2:0 | 3:23,0.509674,0.222511,3,NC_000019.10:44890940-44890962,+,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.0,TCAGTCCCCCCAACCCTGTC,GACAGGGTTGGGGGGACTGA,NGG,38,2:1 | 3:37,0.246353,0.150015,1,NC_000019.10:44893399-44893421,-,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.1,CAGTCCCCCCAACCCTGTCT,AGACAGGGTTGGGGGGACTG,NGG,39,2:1 | 3:38,0.421315,0.183028,2,NC_000019.10:44893398-44893420,-,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.2,TGGAGGCCCAGACAGGGTTG,TGGAGGCCCAGACAGGGTTG,NGG,87,2:6 | 3:81,0.423803,0.0651253,3,NC_000019.10:44893392-44893414,+,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.0,TCAGTCCCCCCAACCCTGTC,GACAGGGTTGGGGGGACTGA,NGG,38,2:1 | 3:37,0.246353,0.150015,1,NC_000019.10:44893399-44893421,-,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.1,CAGTCCCCCCAACCCTGTCT,AGACAGGGTTGGGGGGACTG,NGG,39,2:1 | 3:38,0.421315,0.183028,2,NC_000019.10:44893398-44893420,-,
+rs59007384,chr19:44893392-44893422,chr19:44893392-44893422.2,TGGAGGCCCAGACAGGGTTG,TGGAGGCCCAGACAGGGTTG,NGG,87,2:6 | 3:81,0.423803,0.0651253,3,NC_000019.10:44893392-44893414,+,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.0,ACGTCCACCCCCTTAGTACC,ACGTCCACCCCCTTAGTACC,NGG,11,2:0 | 3:11,0.39942,0.736382,1,NC_000019.10:44899446-44899468,+,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.1,CGTCCACCCCCTTAGTACCT,CGTCCACCCCCTTAGTACCT,NGG,21,2:0 | 3:21,0.556629,0.298302,2,NC_000019.10:44899447-44899469,+,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.2,AGTCCCAGGTACTAAGGGGG,CCCCCTTAGTACCTGGGACT,NGG,1329,2:54 | 3:1275,0.615408,0.0116601,3,NC_000019.10:44899450-44899472,-,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.0,ACGTCCACCCCCTTAGTACC,ACGTCCACCCCCTTAGTACC,NGG,11,2:0 | 3:11,0.39942,0.736382,1,NC_000019.10:44899446-44899468,+,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.1,CGTCCACCCCCTTAGTACCT,CGTCCACCCCCTTAGTACCT,NGG,21,2:0 | 3:21,0.556629,0.298302,2,NC_000019.10:44899447-44899469,+,
+rs35568738,chr19:44899445-44899475,chr19:44899445-44899475.2,AGTCCCAGGTACTAAGGGGG,CCCCCTTAGTACCTGGGACT,NGG,1329,2:54 | 3:1275,0.615408,0.0116601,3,NC_000019.10:44899450-44899472,-,
+rs117264457,chr19:44901159-44901189,chr19:44901159-44901189.0,AATTAGCAAGTGGCCCCACC,GGTGGGGCCACTTGCTAATT,NGG,13,2:0 | 3:13,0.515832,0.450512,1,NC_000019.10:44901159-44901181,-,
+rs1038026,chr19:44901789-44901819,chr19:44901789-44901819.0,GTAGGTAGAGCAGCCAGGCG,GTAGGTAGAGCAGCCAGGCG,NGG,18,2:0 | 3:18,0.584331,0.233128,1,NC_000019.10:44901794-44901816,+,
+rs1038026,chr19:44901789-44901819,chr19:44901789-44901819.1,AAAAAGTAGGTAGAGCAGCC,AAAAAGTAGGTAGAGCAGCC,NGG,48,2:4 | 3:44,0.529511,0.0933511,2,NC_000019.10:44901789-44901811,+,
+rs1038026,chr19:44901789-44901819,chr19:44901789-44901819.0,GTAGGTAGAGCAGCCAGGCG,GTAGGTAGAGCAGCCAGGCG,NGG,18,2:0 | 3:18,0.584331,0.233128,1,NC_000019.10:44901794-44901816,+,
+rs1038026,chr19:44901789-44901819,chr19:44901789-44901819.1,AAAAAGTAGGTAGAGCAGCC,AAAAAGTAGGTAGAGCAGCC,NGG,48,2:4 | 3:44,0.529511,0.0933511,2,NC_000019.10:44901789-44901811,+,
+rs7412,chr19:44908806-44908836,chr19:44908806-44908836.0,CGATGACCTGCAGAAGCGCC,CGATGACCTGCAGAAGCGCC,NGG,8,2:0 | 3:8,0.46055,0.388152,1,NC_000019.10:44908806-44908828,+,"apolipoprotein E, transcript variant 1"
+rs7412,chr19:44908806-44908836,chr19:44908806-44908836.1,ACACTGCCAGGCGCTTCTGC,GCAGAAGCGCCTGGCAGTGT,NGG,21,2:0 | 3:21,0.478205,0.211465,2,NC_000019.10:44908812-44908834,-,"apolipoprotein E, transcript variant 1"
+rs429358,chr19:44908668-44908698,chr19:44908668-44908698.0,GGAGGACGTGTGCGGCCGCC,GGAGGACGTGTGCGGCCGCC,NGG,19,2:0 | 3:19,0.415328,0.404294,1,NC_000019.10:44908674-44908696,+,"apolipoprotein E, transcript variant 1"
+rs72654437,chr19:44912826-44912856,chr19:44912826-44912856.0,TATGCTATTCTTGTGGGGTC,TATGCTATTCTTGTGGGGTC,NGG,20,2:1 | 3:19,0.320912,0.394312,1,NC_000019.10:44912827-44912849,+,
+rs72654437,chr19:44912826-44912856,chr19:44912826-44912856.1,ATGCTATTCTTGTGGGGTCT,ATGCTATTCTTGTGGGGTCT,NGG,21,2:0 | 3:21,0.388747,0.209107,2,NC_000019.10:44912828-44912850,+,
+rs12691088,chr19:44915213-44915243,chr19:44915213-44915243.0,TAAGCTGGGTGGGGGGCTCT,TAAGCTGGGTGGGGGGCTCT,NGG,45,2:3 | 3:42,0.341943,0.103398,1,NC_000019.10:44915219-44915241,+,
+rs12691088,chr19:44915213-44915243,chr19:44915213-44915243.1,GTAAGCTGGGTGGGGGGCTC,GTAAGCTGGGTGGGGGGCTC,NGG,50,2:4 | 3:46,0.123898,0.0916766,2,NC_000019.10:44915218-44915240,+,
+rs12691088,chr19:44915213-44915243,chr19:44915213-44915243.0,TAAGCTGGGTGGGGGGCTCT,TAAGCTGGGTGGGGGGCTCT,NGG,45,2:3 | 3:42,0.341943,0.103398,1,NC_000019.10:44915219-44915241,+,
+rs12691088,chr19:44915213-44915243,chr19:44915213-44915243.1,GTAAGCTGGGTGGGGGGCTC,GTAAGCTGGGTGGGGGGCTC,NGG,50,2:4 | 3:46,0.123898,0.0916766,2,NC_000019.10:44915218-44915240,+,
+rs1064725,chr19:44919288-44919318,chr19:44919288-44919318.0,TGCTGAGGACTCCCTCCATG,TGCTGAGGACTCCCTCCATG,NGG,49,2:2 | 3:47,0.617726,0.157479,1,NC_000019.10:44919290-44919312,+,"apolipoprotein C1, transcript variant 3"
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.0,CCAAGGGGTCGAGTGGATGT,ACATCCACTCGACCCCTTGG,NGG,9,2:0 | 3:9,0.569147,0.44146,1,NC_000019.10:44924510-44924532,-,
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.1,CCAACATCCACTCGACCCCT,CCAACATCCACTCGACCCCT,NGG,10,2:0 | 3:10,0.514857,0.69704,2,NC_000019.10:44924510-44924532,+,
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.2,AGGGGTCGAGTGGATGTTGG,CCAACATCCACTCGACCCCT,NGG,24,2:0 | 3:24,0.547222,0.213829,3,NC_000019.10:44924507-44924529,-,
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.0,CCAAGGGGTCGAGTGGATGT,ACATCCACTCGACCCCTTGG,NGG,9,2:0 | 3:9,0.569147,0.44146,1,NC_000019.10:44924510-44924532,-,
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.1,CCAACATCCACTCGACCCCT,CCAACATCCACTCGACCCCT,NGG,10,2:0 | 3:10,0.514857,0.69704,2,NC_000019.10:44924510-44924532,+,
+rs117664574,chr19:44924506-44924536,chr19:44924506-44924536.2,AGGGGTCGAGTGGATGTTGG,CCAACATCCACTCGACCCCT,NGG,24,2:0 | 3:24,0.547222,0.213829,3,NC_000019.10:44924507-44924529,-,
+rs12983572,chr19:44953559-44953589,chr19:44953559-44953589.0,TGAGTGACTTACCTCTCTGA,TCAGAGAGGTAAGTCACTCA,NGG,16,2:0 | 3:16,0.628362,0.343641,1,NC_000019.10:44953560-44953582,-,
+rs12983572,chr19:44953559-44953589,chr19:44953559-44953589.1,GTGAGTGACTTACCTCTCTG,CAGAGAGGTAAGTCACTCAC,NGG,40,2:0 | 3:40,0.619924,0.20166,2,NC_000019.10:44953561-44953583,-,
+rs12983572,chr19:44953559-44953589,chr19:44953559-44953589.0,TGAGTGACTTACCTCTCTGA,TCAGAGAGGTAAGTCACTCA,NGG,16,2:0 | 3:16,0.628362,0.343641,1,NC_000019.10:44953560-44953582,-,
+rs12983572,chr19:44953559-44953589,chr19:44953559-44953589.1,GTGAGTGACTTACCTCTCTG,CAGAGAGGTAAGTCACTCAC,NGG,40,2:0 | 3:40,0.619924,0.20166,2,NC_000019.10:44953561-44953583,-,
+rs8102895,chr19:44955190-44955220,chr19:44955190-44955220.0,GGCTGGGAGAAAGACGAGTA,GGCTGGGAGAAAGACGAGTA,NGG,36,2:5 | 3:31,0.631667,0.276153,1,NC_000019.10:44955196-44955218,+,
+rs75178253,chr19:44957734-44957764,chr19:44957734-44957764.0,TAAAGCAGCAGACTGTGCAG,CTGCACAGTCTGCTGCTTTA,NGG,58,2:3 | 3:55,0.599585,0.115607,1,NC_000019.10:44957741-44957763,-,
+rs75178253,chr19:44957734-44957764,chr19:44957734-44957764.1,AAAGCAGCAGACTGTGCAGA,TCTGCACAGTCTGCTGCTTT,NGG,69,2:4 | 3:65,0.5808,0.0835503,2,NC_000019.10:44957740-44957762,-,
+rs73558179,chr19:44973231-44973261,chr19:44973231-44973261.0,ACTTGGGAGGTGATGGGGTG,ACTTGGGAGGTGATGGGGTG,NGG,140,2:9 | 3:131,0.375274,0.0518958,1,NC_000019.10:44973234-44973256,+,
+rs73558179,chr19:44973231-44973261,chr19:44973231-44973261.1,GGGAGGTGATGGGGTGTGGA,GGGAGGTGATGGGGTGTGGA,NGG,338,2:18 | 3:320,0.348124,0.0250307,2,NC_000019.10:44973238-44973260,+,
+rs146390218,chr19:44975079-44975109,chr19:44975079-44975109.0,CTCTCATGCGATGTGGCCTT,AAGGCCACATCGCATGAGAG,NGG,16,2:0 | 3:16,0.408604,0.255234,1,NC_000019.10:44975079-44975101,-,
+rs146390218,chr19:44975079-44975109,chr19:44975079-44975109.1,TCTGAATCTCTCATGCGATG,CATCGCATGAGAGATTCAGA,NGG,19,2:0 | 3:19,0.657333,0.267407,2,NC_000019.10:44975086-44975108,-,
+rs146390218,chr19:44975079-44975109,chr19:44975079-44975109.2,TCTCTCATGCGATGTGGCCT,AGGCCACATCGCATGAGAGA,NGG,21,2:0 | 3:21,0.331851,0.291061,3,NC_000019.10:44975080-44975102,-,
+rs117612135,chr19:45001253-45001283,chr19:45001253-45001283.0,GCGCTCAGGAGGGGTTGGGC,GCCCAACCCCTCCTGAGCGC,NGG,42,2:2 | 3:40,0.447396,0.15924,1,NC_000019.10:45001260-45001282,-,
+rs117612135,chr19:45001253-45001283,chr19:45001253-45001283.0,GCGCTCAGGAGGGGTTGGGC,GCCCAACCCCTCCTGAGCGC,NGG,42,2:2 | 3:40,0.447396,0.15924,1,NC_000019.10:45001260-45001282,-,
+rs35912475,chr19:45019458-45019488,chr19:45019458-45019488.0,TAATGAGATTGTAGCTACAG,CTGTAGCTACAATCTCATTA,NGG,40,2:0 | 3:40,0.633877,0.145985,1,NC_000019.10:45019462-45019484,-,
+rs186313460,chr19:45029417-45029447,chr19:45029417-45029447.0,AAAAAGACAGCTGGTCACCG,AAAAAGACAGCTGGTCACCG,NGG,129,2:12 | 3:117,0.701495,0.162461,1,NC_000019.10:45029423-45029445,+,
+rs112481437,chr19:45045861-45045891,chr19:45045861-45045891.0,CTCTGCACCATCCCTCCACC,GGTGGAGGGATGGTGCAGAG,NGG,62,2:4 | 3:58,0.423437,0.135138,1,NC_000019.10:45045866-45045888,-,
+rs112481437,chr19:45045861-45045891,chr19:45045861-45045891.1,CAGGTGGAGGGATGGTGCAG,CAGGTGGAGGGATGGTGCAG,NGG,115,2:4 | 3:111,0.615373,0.0469067,2,NC_000019.10:45045867-45045889,+,
+rs112481437,chr19:45045861-45045891,chr19:45045861-45045891.0,CTCTGCACCATCCCTCCACC,GGTGGAGGGATGGTGCAGAG,NGG,62,2:4 | 3:58,0.423437,0.135138,1,NC_000019.10:45045866-45045888,-,
+rs112481437,chr19:45045861-45045891,chr19:45045861-45045891.1,CAGGTGGAGGGATGGTGCAG,CAGGTGGAGGGATGGTGCAG,NGG,115,2:4 | 3:111,0.615373,0.0469067,2,NC_000019.10:45045867-45045889,+,
+rs12461065,chr19:45102034-45102064,chr19:45102034-45102064.0,AGCGTGTCCTTGGCCTGCTT,AGCGTGTCCTTGGCCTGCTT,NGG,15,2:3 | 3:12,0.39335,0.237408,1,NC_000019.10:45102036-45102058,+,
+rs12461065,chr19:45102034-45102064,chr19:45102034-45102064.1,CAAGCAGGCCAAGGACACGC,GCGTGTCCTTGGCCTGCTTG,NGG,30,2:1 | 3:29,0.602648,0.198836,2,NC_000019.10:45102034-45102056,-,
+rs12461065,chr19:45102034-45102064,chr19:45102034-45102064.2,CAGCGTGTCCTTGGCCTGCT,CAGCGTGTCCTTGGCCTGCT,NGG,32,2:1 | 3:31,0.269876,0.111736,3,NC_000019.10:45102035-45102057,+,
+rs145903417,chr19:45125830-45125860,chr19:45125830-45125860.0,GGAAGAGAAGTGGGCCATTC,GGAAGAGAAGTGGGCCATTC,NGG,34,2:1 | 3:33,0.29986,0.234551,1,NC_000019.10:45125830-45125852,+,
+rs145903417,chr19:45125830-45125860,chr19:45125830-45125860.0,GGAAGAGAAGTGGGCCATTC,GGAAGAGAAGTGGGCCATTC,NGG,34,2:1 | 3:33,0.29986,0.234551,1,NC_000019.10:45125830-45125852,+,
+rs79018068,chr19:45131580-45131610,chr19:45131580-45131610.0,ATTGTGCATGGAAAGTACTT,ATTGTGCATGGAAAGTACTT,NGG,48,2:1 | 3:47,0.544778,0.139185,1,NC_000019.10:45131583-45131605,+,
+rs75463276,chr19:45135558-45135588,chr19:45135558-45135588.0,GCTCCAGAGCTCCTGAGCCA,GCTCCAGAGCTCCTGAGCCA,NGG,74,2:0 | 3:74,0.470995,0.146014,1,NC_000019.10:45135563-45135585,+,
+rs75463276,chr19:45135558-45135588,chr19:45135558-45135588.1,AGCCCCTGGCTCAGGAGCTC,GAGCTCCTGAGCCAGGGGCT,NGG,84,2:5 | 3:79,0.32921,0.0962829,2,NC_000019.10:45135566-45135588,-,
+rs75463276,chr19:45135558-45135588,chr19:45135558-45135588.2,CTCCAGAGCTCCTGAGCCAG,CTCCAGAGCTCCTGAGCCAG,NGG,151,2:11 | 3:140,0.506965,0.0562859,3,NC_000019.10:45135564-45135586,+,
+rs146723120,chr19:45144946-45144976,chr19:45144946-45144976.0,CAGCGTGCTGCGCCTCGGGC,CAGCGTGCTGCGCCTCGGGC,NGG,8,2:0 | 3:8,0.333768,0.545082,1,NC_000019.10:45144949-45144971,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs146723120,chr19:45144946-45144976,chr19:45144946-45144976.1,GCCCGAGGCGCAGCACGCTG,CAGCGTGCTGCGCCTCGGGC,NGG,15,2:0 | 3:15,0.535146,0.42583,2,NC_000019.10:45144946-45144968,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146564-45146594,chr19:45146564-45146594.0,CCGACCGGAAAAAGGGAACT,AGTTCCCTTTTTCCGGTCGG,NGG,4,2:0 | 3:4,0.447777,0.483391,1,NC_000019.10:45146566-45146588,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146564-45146594,chr19:45146564-45146594.1,CGACCGGAAAAAGGGAACTT,AAGTTCCCTTTTTCCGGTCG,NGG,5,2:0 | 3:5,0.515998,0.466166,2,NC_000019.10:45146565-45146587,-,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146564-45146594,chr19:45146564-45146594.2,CCAAGTTCCCTTTTTCCGGT,CCAAGTTCCCTTTTTCCGGT,NGG,13,2:0 | 3:13,0.496109,0.386389,3,NC_000019.10:45146566-45146588,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146564-45146594,chr19:45146564-45146594.3,GACCGGAAAAAGGGAACTTG,CAAGTTCCCTTTTTCCGGTC,NGG,16,2:2 | 3:14,0.667039,0.374103,4,NC_000019.10:45146564-45146586,-,
+rs1005451,chr19:45148805-45148835,chr19:45148805-45148835.0,CTGGGCCTTTCTTACTGTTG,CTGGGCCTTTCTTACTGTTG,NGG,26,2:3 | 3:23,0.45174,0.236606,1,NC_000019.10:45148810-45148832,+,
+rs1005451,chr19:45148805-45148835,chr19:45148805-45148835.1,AACTGGGCCTTTCTTACTGT,AACTGGGCCTTTCTTACTGT,NGG,34,2:0 | 3:34,0.352378,0.287489,2,NC_000019.10:45148808-45148830,+,
+rs1005451,chr19:45148805-45148835,chr19:45148805-45148835.2,ACTGGGCCTTTCTTACTGTT,ACTGGGCCTTTCTTACTGTT,NGG,34,2:0 | 3:34,0.345143,0.16501,3,NC_000019.10:45148809-45148831,+,
+rs1005451,chr19:45148805-45148835,chr19:45148805-45148835.3,TGGGCCTTTCTTACTGTTGG,TGGGCCTTTCTTACTGTTGG,NGG,35,2:0 | 3:35,0.526504,0.163349,4,NC_000019.10:45148811-45148833,+,
+rs149553138,chr19:45169204-45169234,chr19:45169204-45169234.0,GGTAAGTGCTGGGGCGGATC,GATCCGCCCCAGCACTTACC,NGG,13,2:0 | 3:13,0.344582,0.3915,1,NC_000019.10:45169212-45169234,-,
+rs149553138,chr19:45169204-45169234,chr19:45169204-45169234.1,GCTGGGGCGGATCTGGACCC,GGGTCCAGATCCGCCCCAGC,NGG,30,2:1 | 3:29,0.462823,0.195595,2,NC_000019.10:45169205-45169227,-,
+rs62118471,chr19:45187775-45187805,chr19:45187775-45187805.0,TGGGGCATCAGTGGGGGTCC,GGACCCCCACTGATGCCCCA,NGG,60,2:1 | 3:59,0.292531,0.107822,1,NC_000019.10:45187778-45187800,-,
+rs73566243,chr19:45193746-45193776,chr19:45193746-45193776.0,TTCAGTGACTACACAGCAAA,TTTGCTGTGTAGTCACTGAA,NGG,45,2:0 | 3:45,0.445257,0.19347,1,NC_000019.10:45193746-45193768,-,
+rs346750,chr19:45233944-45233974,chr19:45233944-45233974.0,GGTGCCGGAGCTCTTATTCT,GGTGCCGGAGCTCTTATTCT,NGG,6,2:0 | 3:6,0.408255,0.594542,1,NC_000019.10:45233945-45233967,+,
+rs346750,chr19:45233944-45233974,chr19:45233944-45233974.1,CAGTCCTAGAATAAGAGCTC,GAGCTCTTATTCTAGGACTG,NGG,18,2:0 | 3:18,0.549853,0.334418,2,NC_000019.10:45233949-45233971,-,
+rs11673093,chr19:45238820-45238850,chr19:45238820-45238850.0,TTCCGGCTGGGCTGGGCCCC,GGGGCCCAGCCCAGCCGGAA,NGG,53,2:0 | 3:53,0.287527,0.110951,1,NC_000019.10:45238825-45238847,-,exocyst complex component 3 like 2
+rs11673093,chr19:45238820-45238850,chr19:45238820-45238850.1,CGGGGCCCAGCCCAGCCGGA,CGGGGCCCAGCCCAGCCGGA,NGG,57,2:2 | 3:55,0.381568,0.11286,2,NC_000019.10:45238827-45238849,+,exocyst complex component 3 like 2
+rs11673093,chr19:45238820-45238850,chr19:45238820-45238850.2,GGGGCCCAGCCCAGCCGGAA,GGGGCCCAGCCCAGCCGGAA,NGG,69,2:22 | 3:47,0.32949,0.125382,3,NC_000019.10:45238828-45238850,+,exocyst complex component 3 like 2
+rs11673093,chr19:45238820-45238850,chr19:45238820-45238850.3,CTTCCGGCTGGGCTGGGCCC,GGGCCCAGCCCAGCCGGAAG,NGG,93,2:5 | 3:88,0.275578,0.086576,4,NC_000019.10:45238826-45238848,-,exocyst complex component 3 like 2
+rs345421,chr19:45266475-45266505,chr19:45266475-45266505.0,GCGGATGGGGGGGAGGGGAC,GCGGATGGGGGGGAGGGGAC,NGG,226,2:2 | 3:224,0.354944,0.0274051,1,NC_000019.10:45266481-45266503,+,
+rs345421,chr19:45266475-45266505,chr19:45266475-45266505.1,GGGGGAGCGGATGGGGGGGA,GGGGGAGCGGATGGGGGGGA,NGG,432,2:21 | 3:411,0.39697,0.0100107,2,NC_000019.10:45266475-45266497,+,
+rs345421,chr19:45266475-45266505,chr19:45266475-45266505.0,GCGGATGGGGGGGAGGGGAC,GCGGATGGGGGGGAGGGGAC,NGG,226,2:2 | 3:224,0.354944,0.0274051,1,NC_000019.10:45266481-45266503,+,
+rs345421,chr19:45266475-45266505,chr19:45266475-45266505.1,GGGGGAGCGGATGGGGGGGA,GGGGGAGCGGATGGGGGGGA,NGG,432,2:21 | 3:411,0.39697,0.0100107,2,NC_000019.10:45266475-45266497,+,
+rs12973246,chr19:45332930-45332960,chr19:45332930-45332960.0,TCTCTTTCTCGGTCCCGGCA,TGCCGGGACCGAGAAAGAGA,NGG,6,2:0 | 3:6,0.543829,0.627545,1,NC_000019.10:45332938-45332960,-,
+rs12973246,chr19:45332930-45332960,chr19:45332930-45332960.0,TCTCTTTCTCGGTCCCGGCA,TGCCGGGACCGAGAAAGAGA,NGG,6,2:0 | 3:6,0.543829,0.627545,1,NC_000019.10:45332938-45332960,-,
+rs77988534,chr19:45341234-45341264,chr19:45341234-45341264.0,GTGTCAGGCTGTGGGTATGA,GTGTCAGGCTGTGGGTATGA,NGG,45,2:6 | 3:39,0.580588,0.145283,1,NC_000019.10:45341238-45341260,+,
+rs77988534,chr19:45341234-45341264,chr19:45341234-45341264.1,TGTGTCAGGCTGTGGGTATG,TGTGTCAGGCTGTGGGTATG,NGG,81,2:5 | 3:76,0.511821,0.121045,2,NC_000019.10:45341237-45341259,+,
+rs10423015,chr19:45451772-45451802,chr19:45451772-45451802.0,GTGGTTTGCACTTGTGTATC,GTGGTTTGCACTTGTGTATC,NGG,42,2:0 | 3:42,0.173599,0.255589,1,NC_000019.10:45451775-45451797,+,
+rs10423015,chr19:45451772-45451802,chr19:45451772-45451802.1,TGGTTTGCACTTGTGTATCT,TGGTTTGCACTTGTGTATCT,NGG,50,2:4 | 3:46,0.458738,0.255429,2,NC_000019.10:45451776-45451798,+,
+rs3865444,chr19:51224690-51224720,chr19:51224690-51224720.0,ACTAAACACCCCATGGATCT,ACTAAACACCCCATGGATCT,NGG,33,2:0 | 3:33,0.423653,0.289099,1,NC_000019.10:51224695-51224717,+,"CD33 molecule, transcript variant X2"
+rs6127744,chr20:56411202-56411232,chr20:56411202-56411232.0,TTGAGCCTGGCTTGGAAGAA,TTGAGCCTGGCTTGGAAGAA,NGG,78,2:6 | 3:72,0.406867,0.0979908,1,NC_000020.11:56411209-56411231,+,
+rs6127744,chr20:56411202-56411232,chr20:56411202-56411232.1,TGAGCCTGGCTTGGAAGAAT,TGAGCCTGGCTTGGAAGAAT,NGG,80,2:1 | 3:79,0.438048,0.145274,2,NC_000020.11:56411210-56411232,+,
+rs75087725,chr21:44333218-44333248,chr21:44333218-44333248.0,GCACCGGCTCACAGGCTCCA,GCACCGGCTCACAGGCTCCA,NGG,34,2:4 | 3:30,0.570586,0.174553,1,NC_000021.9:44333223-44333245,+,"cilia and flagella associated protein 410, transcript variant X1"
+rs75087725,chr21:44333218-44333248,chr21:44333218-44333248.1,GGCACCGGCTCACAGGCTCC,GGCACCGGCTCACAGGCTCC,NGG,36,2:4 | 3:32,0.40113,0.143454,2,NC_000021.9:44333222-44333244,+,"cilia and flagella associated protein 410, transcript variant X1"
+rs75087725,chr21:44333218-44333248,chr21:44333218-44333248.2,CCGGCTCACAGGCTCCAGGG,CCGGCTCACAGGCTCCAGGG,NGG,58,2:4 | 3:54,0.688577,0.154843,3,NC_000021.9:44333226-44333248,+,"cilia and flagella associated protein 410, transcript variant X1"
+rs75087725,chr21:44333218-44333248,chr21:44333218-44333248.3,CCACCCTGGAGCCTGTGAGC,GCTCACAGGCTCCAGGGTGG,NGG,99,2:5 | 3:94,0.499058,0.0816407,4,NC_000021.9:44333226-44333248,-,"cilia and flagella associated protein 410, transcript variant X1"

data/GuideScan2/GuideScan2_30bp_cpf1-.csv

@@ -0,0 +1,62 @@
+Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+chr1:161185586-161185616,chr1:161185586-161185616.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,N/A,N/A,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+chr10:59908043-59908073,chr10:59908043-59908073.0,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,N/A,N/A,1,NC_000010.11:59908047-59908070,-,
+chr11:47395616-47395646,chr11:47395616-47395646.0,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,N/A,N/A,1,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:47395616-47395646,chr11:47395616-47395646.1,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,N/A,N/A,2,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:86158679-86158709,chr11:86158679-86158709.0,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,N/A,N/A,1,NC_000011.10:86158686-86158709,-,
+chr11:86163264-86163294,chr11:86163264-86163294.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,N/A,N/A,1,NC_000011.10:86163269-86163292,+,
+chr11:86163264-86163294,chr11:86163264-86163294.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,N/A,N/A,2,NC_000011.10:86163270-86163293,+,
+chr11:86163264-86163294,chr11:86163264-86163294.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,N/A,N/A,3,NC_000011.10:86163264-86163287,+,
+chr11:133949506-133949536,chr11:133949506-133949536.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,N/A,N/A,1,NC_000011.10:133949507-133949530,-,
+chr12:40259692-40259722,chr12:40259692-40259722.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,N/A,N/A,1,NC_000012.12:40259693-40259716,-,
+chr12:40259692-40259722,chr12:40259692-40259722.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,N/A,N/A,2,NC_000012.12:40259699-40259722,-,
+chr14:92464085-92464115,chr14:92464085-92464115.0,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,N/A,N/A,1,NC_000014.9:92464085-92464108,-,
+chr14:92464085-92464115,chr14:92464085-92464115.1,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,N/A,N/A,2,NC_000014.9:92464092-92464115,+,
+chr15:50529045-50529075,chr15:50529045-50529075.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,N/A,N/A,1,NC_000015.10:50529047-50529070,-,
+chr19:44839542-44839572,chr19:44839542-44839572.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,N/A,N/A,1,NC_000019.10:44839548-44839571,-,
+chr19:44874871-44874901,chr19:44874871-44874901.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44874872-44874895,-,
+chr19:44877697-44877727,chr19:44877697-44877727.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,N/A,N/A,1,NC_000019.10:44877704-44877727,+,
+chr19:44924375-44924405,chr19:44924375-44924405.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:44924380-44924403,-,
+chr19:44924375-44924405,chr19:44924375-44924405.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,N/A,N/A,2,NC_000019.10:44924381-44924404,-,
+chr19:45040481-45040511,chr19:45040481-45040511.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:45040485-45040508,+,
+chr19:45193746-45193776,chr19:45193746-45193776.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,N/A,N/A,1,NC_000019.10:45193747-45193770,+,
+chr19:45193746-45193776,chr19:45193746-45193776.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,N/A,N/A,2,NC_000019.10:45193748-45193771,+,
+chr19:45212918-45212948,chr19:45212918-45212948.0,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,N/A,N/A,1,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+chr19:45303279-45303309,chr19:45303279-45303309.0,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,N/A,N/A,1,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45303279-45303309,chr19:45303279-45303309.1,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,N/A,N/A,2,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45332930-45332960,chr19:45332930-45332960.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45332932-45332955,-,
+chr19:45341234-45341264,chr19:45341234-45341264.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,N/A,N/A,1,NC_000019.10:45341241-45341264,-,
+chr19:45451772-45451802,chr19:45451772-45451802.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:45451778-45451801,+,
+chr2:127068941-127068971,chr2:127068941-127068971.0,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+chr2:127104174-127104204,chr2:127104174-127104204.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127104176-127104199,-,
+chr2:127115976-127116006,chr2:127115976-127116006.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,N/A,N/A,1,NC_000002.12:127115976-127115999,+,
+chr2:127133341-127133371,chr2:127133341-127133371.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,N/A,N/A,1,NC_000002.12:127133344-127133367,-,
+chr2:134707030-134707060,chr2:134707030-134707060.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,N/A,N/A,1,NC_000002.12:134707033-134707056,+,
+chr4:89689160-89689190,chr4:89689160-89689190.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,N/A,N/A,1,NC_000004.12:89689164-89689187,-,
+chr4:89781614-89781644,chr4:89781614-89781644.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,N/A,N/A,1,NC_000004.12:89781620-89781643,-,
+chr6:4032340-4032370,chr6:4032340-4032370.0,TTNATTTATAATTGGGGATT,AATCCCCAATTATAAATNAA,TTT,78,2:3 | 3:75,N/A,N/A,1,NC_000006.12:4032340-4032363,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:3657961-3657991,chr6:3657961-3657991.0,TTTNTACAAGGAGGCAGTGA,TTTNTACAAGGAGGCAGTGA,CTC,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:3657965-3657988,+,
+chr6:3852310-3852340,chr6:3852310-3852340.0,TTTNAACTTCCCAATTCAAA,TTTNAACTTCCCAATTCAAA,GGT,7,2:1 | 3:6,N/A,N/A,1,NC_000006.12:3852315-3852338,+,
+chr6:3852310-3852340,chr6:3852310-3852340.1,TTNAATTGGGAAGTTTAAAA,TTTTAAACTTCCCAATTNAA,GCT,22,2:1 | 3:21,N/A,N/A,2,NC_000006.12:3852311-3852334,-,
+chr6:3852310-3852340,chr6:3852310-3852340.2,TTTNAAACTTCCCAATTCAA,TTTNAAACTTCCCAATTCAA,AGG,23,2:1 | 3:22,N/A,N/A,3,NC_000006.12:3852314-3852337,+,
+chr6:3711026-3711056,chr6:3711026-3711056.0,TTNTGGAACAATCCATATTA,TAATATGGATTGTTCCANAA,GAG,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3711029-3711052,-,
+chr6:3711026-3711056,chr6:3711026-3711056.1,TTNGGAACAATCCATATTAG,CTAATATGGATTGTTCCNAA,AGA,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3711028-3711051,-,
+chr6:3711026-3711056,chr6:3711026-3711056.2,TTNGAACAATCCATATTAGA,TCTAATATGGATTGTTCNAA,GAT,9,2:1 | 3:8,N/A,N/A,3,NC_000006.12:3711027-3711050,-,
+chr6:3721895-3721925,chr6:3721895-3721925.0,TTNCTGTTACTAGTCCGTGC,GCACGGACTAGTAACAGNAA,GCA,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3721896-3721919,-,
+chr6:3721895-3721925,chr6:3721895-3721925.1,TTNACTGTTACTAGTCCGTG,CACGGACTAGTAACAGTNAA,CGC,0,2:0 | 3:0,N/A,N/A,2,NC_000006.12:3721897-3721920,-,
+chr6:4029661-4029691,chr6:4029661-4029691.0,TTNCTGAGAAAGGACAGGGA,TCCCTGTCCTTTCTCAGNAA,TTA,14,2:0 | 3:14,N/A,N/A,1,NC_000006.12:4029666-4029689,-,
+chr6:3747764-3747794,chr6:3747764-3747794.0,TTTNTCTTGTTACTATTGGA,TTTNTCTTGTTACTATTGGA,TTT,32,2:0 | 3:32,N/A,N/A,1,NC_000006.12:3747767-3747790,+,
+chr6:3595324-3595354,chr6:3595324-3595354.0,TTNTATCCTGGCTTGTGGCC,GGCCACAAGCCAGGATANAA,GGG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3595331-3595354,-,
+chr6:3816261-3816291,chr6:3816261-3816291.0,TTTNTAATATGTCACAGTTT,TTTNTAATATGTCACAGTTT,TGA,48,2:1 | 3:47,N/A,N/A,1,NC_000006.12:3816268-3816291,+,
+chr6:3876230-3876260,chr6:3876230-3876260.0,TTNGCCCTGAAGAGCCAAGA,TCTTGGCTCTTCAGGGCNAA,TGT,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:3876231-3876254,-,
+chr6:3721936-3721966,chr6:3721936-3721966.0,TTNGCTCCCCAACCTCATCC,GGATGAGGTTGGGGAGCNAA,CCT,5,2:0 | 3:5,N/A,N/A,1,NC_000006.12:3721942-3721965,-,
+chr6:4018970-4019000,chr6:4018970-4019000.0,TTTNCTTTAATTGTAACTCC,TTTNCTTTAATTGTAACTCC,CCC,7,2:0 | 3:7,N/A,N/A,1,NC_000006.12:4018975-4018998,+,
+chr6:4113608-4113638,chr6:4113608-4113638.0,TTTNCTAAACAGTCTCACTG,TTTNCTAAACAGTCTCACTG,CAG,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:4113613-4113636,+,
+chr7:23229430-23229460,chr7:23229430-23229460.0,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,N/A,N/A,1,NC_000007.14:23229434-23229457,+,
+chr8:16840054-16840084,chr8:16840054-16840084.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,N/A,N/A,1,NC_000008.11:16840056-16840079,+,
+chr9:27491928-27491958,chr9:27491928-27491958.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,N/A,N/A,1,NC_000009.12:27491929-27491952,+,
+chr9:27511270-27511300,chr9:27511270-27511300.0,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,N/A,N/A,1,NC_000009.12:27511271-27511294,-,
+chr9:27511270-27511300,chr9:27511270-27511300.1,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,N/A,N/A,2,NC_000009.12:27511270-27511293,-,
+chr9:27543615-27543645,chr9:27543615-27543645.0,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,N/A,N/A,1,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+chr9:27543615-27543645,chr9:27543615-27543645.1,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,N/A,N/A,2,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+chr9:27584045-27584075,chr9:27584045-27584075.0,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,N/A,N/A,1,NC_000009.12:27584050-27584073,+,

data/GuideScan2/GuideScan2_30bp_cpf1.csv

@@ -0,0 +1,56 @@
+query,Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+rs4575098,chr1:161185586-161185616,chr1:161185586-161185616.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,,,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+rs1060743,chr2:127068941-127068971,chr2:127068941-127068971.0,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,,,1,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+rs4663096,chr2:127104174-127104204,chr2:127104174-127104204.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,,,1,NC_000002.12:127104176-127104199,-,
+rs7594230,chr2:127115976-127116006,chr2:127115976-127116006.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs7594230,chr2:127115976-127116006,chr2:127115976-127116006.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs35968837,chr2:127133341-127133371,chr2:127133341-127133371.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,,,1,NC_000002.12:127133344-127133367,-,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707030-134707060,chr2:134707030-134707060.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs114088559,chr4:89689160-89689190,chr4:89689160-89689190.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,,,1,NC_000004.12:89689164-89689187,-,
+rs3775434,chr4:89781614-89781644,chr4:89781614-89781644.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,,,1,NC_000004.12:89781620-89781643,-,
+rs1637190,chr7:23229430-23229460,chr7:23229430-23229460.0,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,,,1,NC_000007.14:23229434-23229457,+,
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840054-16840084,chr8:16840054-16840084.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs139185008,chr9:27491928-27491958,chr9:27491928-27491958.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,,,1,NC_000009.12:27491929-27491952,+,
+rs2484314,chr9:27511270-27511300,chr9:27511270-27511300.0,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,,,1,NC_000009.12:27511271-27511294,-,
+rs2484314,chr9:27511270-27511300,chr9:27511270-27511300.1,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,,,2,NC_000009.12:27511270-27511293,-,
+rs147599399,chr9:27543615-27543645,chr9:27543615-27543645.0,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,,,1,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+rs147599399,chr9:27543615-27543645,chr9:27543615-27543645.1,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,,,2,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+rs34555425,chr9:27584045-27584075,chr9:27584045-27584075.0,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,,,1,NC_000009.12:27584050-27584073,+,
+rs1171832,chr10:59908043-59908073,chr10:59908043-59908073.0,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,1,NC_000010.11:59908047-59908070,-,
+rs1171832,chr10:59908043-59908073,chr10:59908043-59908073.0,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,1,NC_000010.11:59908047-59908070,-,
+rs10769263,chr11:47395616-47395646,chr11:47395616-47395646.0,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,,,1,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+rs10769263,chr11:47395616-47395646,chr11:47395616-47395646.1,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,,,2,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+rs7113976,chr11:86158679-86158709,chr11:86158679-86158709.0,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,1,NC_000011.10:86158686-86158709,-,
+rs7113976,chr11:86158679-86158709,chr11:86158679-86158709.0,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,1,NC_000011.10:86158686-86158709,-,
+rs11603136,chr11:86163264-86163294,chr11:86163264-86163294.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,,,1,NC_000011.10:86163269-86163292,+,
+rs11603136,chr11:86163264-86163294,chr11:86163264-86163294.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,,,2,NC_000011.10:86163270-86163293,+,
+rs11603136,chr11:86163264-86163294,chr11:86163264-86163294.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,,,3,NC_000011.10:86163264-86163287,+,
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs564123,chr11:133949506-133949536,chr11:133949506-133949536.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs28903073,chr12:40259692-40259722,chr12:40259692-40259722.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,,,1,NC_000012.12:40259693-40259716,-,
+rs28903073,chr12:40259692-40259722,chr12:40259692-40259722.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,,,2,NC_000012.12:40259699-40259722,-,
+rs61977311,chr14:92464085-92464115,chr14:92464085-92464115.0,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,,,1,NC_000014.9:92464085-92464108,-,
+rs61977311,chr14:92464085-92464115,chr14:92464085-92464115.1,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,,,2,NC_000014.9:92464092-92464115,+,
+rs3098199,chr15:50529045-50529075,chr15:50529045-50529075.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,,,1,NC_000015.10:50529047-50529070,-,
+rs1466435,chr19:44839542-44839572,chr19:44839542-44839572.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,,,1,NC_000019.10:44839548-44839571,-,
+rs34278513,chr19:44874871-44874901,chr19:44874871-44874901.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,,,1,NC_000019.10:44874872-44874895,-,
+rs11668861,chr19:44877697-44877727,chr19:44877697-44877727.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs11668861,chr19:44877697-44877727,chr19:44877697-44877727.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs4803771,chr19:44924375-44924405,chr19:44924375-44924405.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924375-44924405,chr19:44924375-44924405.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs4803771,chr19:44924375-44924405,chr19:44924375-44924405.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924375-44924405,chr19:44924375-44924405.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs76856627,chr19:45040481-45040511,chr19:45040481-45040511.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,,,1,NC_000019.10:45040485-45040508,+,
+rs73566243,chr19:45193746-45193776,chr19:45193746-45193776.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,,,1,NC_000019.10:45193747-45193770,+,
+rs73566243,chr19:45193746-45193776,chr19:45193746-45193776.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,,,2,NC_000019.10:45193748-45193771,+,
+rs11667509,chr19:45212918-45212948,chr19:45212918-45212948.0,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,,,1,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+rs183442275,chr19:45303279-45303309,chr19:45303279-45303309.0,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,,,1,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs183442275,chr19:45303279-45303309,chr19:45303279-45303309.1,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,,,2,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs12973246,chr19:45332930-45332960,chr19:45332930-45332960.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs12973246,chr19:45332930-45332960,chr19:45332930-45332960.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs77988534,chr19:45341234-45341264,chr19:45341234-45341264.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,,,1,NC_000019.10:45341241-45341264,-,
+rs10423015,chr19:45451772-45451802,chr19:45451772-45451802.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,,,1,NC_000019.10:45451778-45451801,+,

data/GuideScan2/GuideScan2_40bp_cpf1-.csv

@@ -0,0 +1,165 @@
+Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+chr1:156102405-156102445,chr1:156102405-156102445.0,TTTNAGTCCTGGTTCTGTCA,TTTNAGTCCTGGTTCTGTCA,CCT,70,2:2 | 3:68,N/A,N/A,1,NC_000001.11:156102405-156102428,+,
+chr1:161185581-161185621,chr1:161185581-161185621.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,N/A,N/A,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+chr10:59908038-59908078,chr10:59908038-59908078.0,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,N/A,N/A,1,NC_000010.11:59908052-59908075,+,
+chr10:59908038-59908078,chr10:59908038-59908078.1,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,N/A,N/A,2,NC_000010.11:59908053-59908076,+,
+chr10:59908038-59908078,chr10:59908038-59908078.2,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,N/A,N/A,3,NC_000010.11:59908047-59908070,-,
+chr10:119612795-119612835,chr10:119612795-119612835.0,TTTNCTGAACAGGTGGCGGG,TTTNCTGAACAGGTGGCGGG,CGC,0,2:0 | 3:0,N/A,N/A,1,NC_000010.11:119612799-119612822,+,
+chr11:47395611-47395651,chr11:47395611-47395651.0,TTNTTATAGCCATGAAATGC,GCATTTCATGGCTATAANAA,TCT,14,2:0 | 3:14,N/A,N/A,1,NC_000011.10:47395615-47395638,-,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:47395611-47395651,chr11:47395611-47395651.1,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,N/A,N/A,2,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:47395611-47395651,chr11:47395611-47395651.2,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,N/A,N/A,3,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:60202553-60202593,chr11:60202553-60202593.0,TTNCGGTTTGGGTAATAGCT,AGCTATTACCCAAACCGNAA,CTC,2,2:0 | 3:2,N/A,N/A,1,NC_000011.10:60202555-60202578,-,
+chr11:60202553-60202593,chr11:60202553-60202593.1,TTNGGTTTGGGTAATAGCTC,GAGCTATTACCCAAACCNAA,TCA,4,2:0 | 3:4,N/A,N/A,2,NC_000011.10:60202554-60202577,-,
+chr11:60322885-60322925,chr11:60322885-60322925.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,N/A,N/A,1,NC_000011.10:60322902-60322925,-,
+chr11:86158674-86158714,chr11:86158674-86158714.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,N/A,N/A,1,NC_000011.10:86158687-86158710,-,
+chr11:86158674-86158714,chr11:86158674-86158714.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,N/A,N/A,2,NC_000011.10:86158686-86158709,-,
+chr11:86158674-86158714,chr11:86158674-86158714.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,N/A,N/A,3,NC_000011.10:86158688-86158711,-,
+chr11:86163259-86163299,chr11:86163259-86163299.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,N/A,N/A,1,NC_000011.10:86163269-86163292,+,
+chr11:86163259-86163299,chr11:86163259-86163299.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,N/A,N/A,2,NC_000011.10:86163270-86163293,+,
+chr11:86163259-86163299,chr11:86163259-86163299.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,N/A,N/A,3,NC_000011.10:86163264-86163287,+,
+chr11:133902922-133902962,chr11:133902922-133902962.0,TTNATATAAGCCATGGGAGG,CCTCCCATGGCTTATATNAA,GGC,1,2:0 | 3:1,N/A,N/A,1,NC_000011.10:133902925-133902948,-,immunoglobulin superfamily member 9B
+chr11:133902922-133902962,chr11:133902922-133902962.1,TTNCATATAAGCCATGGGAG,CTCCCATGGCTTATATGNAA,GGG,1,2:0 | 3:1,N/A,N/A,2,NC_000011.10:133902926-133902949,-,immunoglobulin superfamily member 9B
+chr11:133949501-133949541,chr11:133949501-133949541.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,N/A,N/A,1,NC_000011.10:133949507-133949530,-,
+chr11:133949501-133949541,chr11:133949501-133949541.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,N/A,N/A,2,NC_000011.10:133949502-133949525,-,
+chr12:39936290-39936330,chr12:39936290-39936330.0,TTNGAGGTACTTCTAGTTCA,TGAACTAGAAGTACCTCNAA,AGC,2,2:0 | 3:2,N/A,N/A,1,NC_000012.12:39936307-39936330,-,
+chr12:40259687-40259727,chr12:40259687-40259727.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,N/A,N/A,1,NC_000012.12:40259693-40259716,-,
+chr12:40259687-40259727,chr12:40259687-40259727.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,N/A,N/A,2,NC_000012.12:40259699-40259722,-,
+chr12:40259687-40259727,chr12:40259687-40259727.2,TTTNTGTCGACTAAATGTAA,TTTNTGTCGACTAAATGTAA,ATC,5,2:0 | 3:5,N/A,N/A,3,NC_000012.12:40259702-40259725,+,
+chr12:41036408-41036448,chr12:41036408-41036448.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,N/A,N/A,1,NC_000012.12:41036409-41036432,-,
+chr12:41195592-41195632,chr12:41195592-41195632.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,N/A,N/A,1,NC_000012.12:41195608-41195631,-,
+chr14:92464080-92464120,chr14:92464080-92464120.0,TTTNAGAGACCAAATAGAGC,TTTNAGAGACCAAATAGAGC,ATC,5,2:0 | 3:5,N/A,N/A,1,NC_000014.9:92464095-92464118,+,
+chr14:92464080-92464120,chr14:92464080-92464120.1,TTTNAAGAGACCAAATAGAG,TTTNAAGAGACCAAATAGAG,CAT,8,2:0 | 3:8,N/A,N/A,2,NC_000014.9:92464094-92464117,+,
+chr14:92464080-92464120,chr14:92464080-92464120.2,TTTNTAAGAGACCAAATAGA,TTTNTAAGAGACCAAATAGA,GCA,10,2:0 | 3:10,N/A,N/A,3,NC_000014.9:92464093-92464116,+,
+chr14:92464080-92464120,chr14:92464080-92464120.3,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,N/A,N/A,4,NC_000014.9:92464085-92464108,-,
+chr14:92464080-92464120,chr14:92464080-92464120.4,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,N/A,N/A,5,NC_000014.9:92464092-92464115,+,
+chr15:50529040-50529080,chr15:50529040-50529080.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,N/A,N/A,1,NC_000015.10:50529047-50529070,-,
+chr15:50529040-50529080,chr15:50529040-50529080.1,TTTNCTTCAGGAAATCTTTA,TTTNCTTCAGGAAATCTTTA,TTG,124,2:4 | 3:120,N/A,N/A,2,NC_000015.10:50529057-50529080,+,
+chr17:781779-781819,chr17:781779-781819.0,TTNATGTAGATAAAATCAGC,GCTGATTTTATCTACATNAA,GTA,5,2:0 | 3:5,N/A,N/A,1,NC_000017.11:781779-781802,-,
+chr19:44575184-44575224,chr19:44575184-44575224.0,TTTNAGCAATAGGCGCTAAT,TTTNAGCAATAGGCGCTAAT,ATT,6,2:0 | 3:6,N/A,N/A,1,NC_000019.10:44575186-44575209,+,
+chr19:44663663-44663703,chr19:44663663-44663703.0,TTNGCGTCTTGCTTCCATGC,GCATGGAAGCAAGACGCNAA,CTC,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44663666-44663689,-,"PVR cell adhesion molecule, transcript variant 1"
+chr19:44732668-44732708,chr19:44732668-44732708.0,TTNCACAGGATGGAACCTGA,TCAGGTTCCATCCTGTGNAA,GGA,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:44732681-44732704,-,
+chr19:44737971-44738010,chr19:44737971-44738010.0,TTNCCTGGAAGTCGGTGCCT,AGGCACCGACTTCCAGGNAA,CCC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44737974-44737997,-,
+chr19:44737971-44738010,chr19:44737971-44738010.1,TTNCCCTGGAAGTCGGTGCC,GGCACCGACTTCCAGGGNAA,TCC,2,2:0 | 3:2,N/A,N/A,2,NC_000019.10:44737975-44737998,-,
+chr19:44751988-44752028,chr19:44751988-44752028.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,N/A,N/A,1,NC_000019.10:44752005-44752028,-,
+chr19:44839537-44839577,chr19:44839537-44839577.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,N/A,N/A,1,NC_000019.10:44839548-44839571,-,
+chr19:44867663-44867703,chr19:44867663-44867703.0,TTNCATTCCTGGAACGCGCC,GGCGCGTTCCAGGAATGNAA,CAG,3,2:0 | 3:3,N/A,N/A,1,NC_000019.10:44867676-44867699,-,
+chr19:44874866-44874906,chr19:44874866-44874906.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44874872-44874895,-,
+chr19:44874866-44874906,chr19:44874866-44874906.1,TTNCTCTTTGGCTCCGTGCC,GGCACGGAGCCAAAGAGNAA,TTG,1,2:0 | 3:1,N/A,N/A,2,NC_000019.10:44874879-44874902,-,
+chr19:44874866-44874906,chr19:44874866-44874906.2,TTNCCTCTTTGGCTCCGTGC,GCACGGAGCCAAAGAGGNAA,CTT,11,2:0 | 3:11,N/A,N/A,3,NC_000019.10:44874880-44874903,-,
+chr19:44876468-44876508,chr19:44876468-44876508.0,TTNTGCAGGCATTATCTGAA,TTCAGATAATGCCTGCANAA,GGC,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44876482-44876505,-,
+chr19:44877692-44877732,chr19:44877692-44877732.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,N/A,N/A,1,NC_000019.10:44877704-44877727,+,
+chr19:44890933-44890973,chr19:44890933-44890973.0,TTNGCCACGCCCGCTGAGGC,GCCTCAGCGGGCGTGGCNAA,ATC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44890948-44890971,-,
+chr19:44890933-44890973,chr19:44890933-44890973.1,TTNCCACGCCCGCTGAGGCA,TGCCTCAGCGGGCGTGGNAA,TCG,2,2:0 | 3:2,N/A,N/A,2,NC_000019.10:44890947-44890970,-,
+chr19:44910298-44910338,chr19:44910298-44910338.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,N/A,N/A,1,NC_000019.10:44910300-44910323,+,
+chr19:44924370-44924410,chr19:44924370-44924410.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:44924380-44924403,-,
+chr19:44924370-44924410,chr19:44924370-44924410.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,N/A,N/A,2,NC_000019.10:44924381-44924404,-,
+chr19:44956573-44956613,chr19:44956573-44956613.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,N/A,N/A,1,NC_000019.10:44956576-44956599,-,
+chr19:44965851-44965891,chr19:44965851-44965891.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44965851-44965874,+,
+chr19:45040476-45040516,chr19:45040476-45040516.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:45040485-45040508,+,
+chr19:45045856-45045896,chr19:45045856-45045896.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:45045858-45045881,+,
+chr19:45146559-45146599,chr19:45146559-45146599.0,TTTNTCCGGTCGGTCTGCGA,TTTNTCCGGTCGGTCTGCGA,TGA,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45146575-45146598,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146559-45146599,chr19:45146559-45146599.1,TTTNCCGGTCGGTCTGCGAT,TTTNCCGGTCGGTCTGCGAT,GAG,0,2:0 | 3:0,N/A,N/A,2,NC_000019.10:45146576-45146599,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45148800-45148840,chr19:45148800-45148840.0,TTTNTTACTGTTGGGGGTTG,TTTNTTACTGTTGGGGGTTG,AAT,34,2:1 | 3:33,N/A,N/A,1,NC_000019.10:45148816-45148839,+,
+chr19:45193741-45193781,chr19:45193741-45193781.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,N/A,N/A,1,NC_000019.10:45193747-45193770,+,
+chr19:45193741-45193781,chr19:45193741-45193781.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,N/A,N/A,2,NC_000019.10:45193748-45193771,+,
+chr19:45195908-45195948,chr19:45195908-45195948.0,TTNATTCTGATTAGAATGCT,AGCATTCTAATCAGAATNAA,CTC,19,2:0 | 3:19,N/A,N/A,1,NC_000019.10:45195922-45195945,-,
+chr19:45195908-45195948,chr19:45195908-45195948.1,TTNCATTCTGATTAGAATGC,GCATTCTAATCAGAATGNAA,TCT,33,2:3 | 3:30,N/A,N/A,2,NC_000019.10:45195923-45195946,-,
+chr19:45212913-45212953,chr19:45212913-45212953.0,TTNACCCAACCCCAAACTCC,GGAGTTTGGGGTTGGGTNAA,CTG,6,2:1 | 3:5,N/A,N/A,1,NC_000019.10:45212916-45212939,-,exocyst complex component 3 like 2
+chr19:45212913-45212953,chr19:45212913-45212953.1,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,N/A,N/A,2,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+chr19:45212913-45212953,chr19:45212913-45212953.2,TTNCACCCAACCCCAAACTC,GAGTTTGGGGTTGGGTGNAA,CCT,7,2:0 | 3:7,N/A,N/A,3,NC_000019.10:45212917-45212940,-,exocyst complex component 3 like 2
+chr19:45303274-45303314,chr19:45303274-45303314.0,TTTNTAAGTTATTACACCCC,TTTNTAAGTTATTACACCCC,GAC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45303278-45303301,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45303274-45303314,chr19:45303274-45303314.1,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,N/A,N/A,2,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45303274-45303314,chr19:45303274-45303314.2,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,N/A,N/A,3,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45332925-45332965,chr19:45332925-45332965.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45332932-45332955,-,
+chr19:45341229-45341269,chr19:45341229-45341269.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,N/A,N/A,1,NC_000019.10:45341241-45341264,-,
+chr19:45451767-45451807,chr19:45451767-45451807.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:45451778-45451801,+,
+chr19:45451767-45451807,chr19:45451767-45451807.1,TTTNTGTGGTTTGCACTTGT,TTTNTGTGGTTTGCACTTGT,GTA,24,2:1 | 3:23,N/A,N/A,2,NC_000019.10:45451769-45451792,+,
+chr2:127054659-127054699,chr2:127054659-127054699.0,TTNAACCCAAGTGCCCCGGG,CCCGGGGCACTTGGGTTNAA,TGG,1,2:0 | 3:1,N/A,N/A,1,NC_000002.12:127054673-127054696,-,
+chr2:127054659-127054699,chr2:127054659-127054699.1,TTNACCCAAGTGCCCCGGGT,ACCCGGGGCACTTGGGTNAA,GGT,2,2:0 | 3:2,N/A,N/A,2,NC_000002.12:127054672-127054695,-,
+chr2:127068936-127068976,chr2:127068936-127068976.0,TTTNGGCAGTTTGAAGGGAC,TTTNGGCAGTTTGAAGGGAC,TCG,0,2:0 | 3:0,N/A,N/A,1,NC_000002.12:127068949-127068972,+,"bridging integrator 1, transcript variant 15"
+chr2:127068936-127068976,chr2:127068936-127068976.1,TTTNGCAGTTTGAAGGGACT,TTTNGCAGTTTGAAGGGACT,CGT,0,2:0 | 3:0,N/A,N/A,2,NC_000002.12:127068950-127068973,+,"bridging integrator 1, transcript variant 15"
+chr2:127068936-127068976,chr2:127068936-127068976.2,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,N/A,N/A,3,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+chr2:127084565-127084605,chr2:127084565-127084605.0,TTTNAGCGTTCCCTCATGCT,TTTNAGCGTTCCCTCATGCT,CAG,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127084581-127084604,+,
+chr2:127104169-127104209,chr2:127104169-127104209.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127104176-127104199,-,
+chr2:127115971-127116011,chr2:127115971-127116011.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,N/A,N/A,1,NC_000002.12:127115976-127115999,+,
+chr2:127133336-127133376,chr2:127133336-127133376.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,N/A,N/A,1,NC_000002.12:127133344-127133367,-,
+chr2:134707025-134707065,chr2:134707025-134707065.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,N/A,N/A,1,NC_000002.12:134707033-134707056,+,
+chr21:26775851-26775891,chr21:26775851-26775891.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,N/A,N/A,1,NC_000021.9:26775853-26775876,-,
+chr21:26775851-26775891,chr21:26775851-26775891.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,N/A,N/A,2,NC_000021.9:26775852-26775875,-,
+chr21:26775851-26775891,chr21:26775851-26775891.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,N/A,N/A,3,NC_000021.9:26775851-26775874,-,
+chr4:982789-982829,chr4:982789-982829.0,TTNTTTCAGTGAGGTGTGGG,CCCACACCTCACTGAAANAA,GAG,17,2:1 | 3:16,N/A,N/A,1,NC_000004.12:982789-982812,-,
+chr4:89657339-89657379,chr4:89657339-89657379.0,TTNATTGTTCACTGAATCTT,AAGATTCAGTGAACAATNAA,AAA,28,2:0 | 3:28,N/A,N/A,1,NC_000004.12:89657343-89657366,-,
+chr4:89657339-89657379,chr4:89657339-89657379.1,TTTNAGATTCAGTGAACAAT,TTTNAGATTCAGTGAACAAT,GAA,29,2:1 | 3:28,N/A,N/A,2,NC_000004.12:89657343-89657366,+,
+chr4:89689155-89689195,chr4:89689155-89689195.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,N/A,N/A,1,NC_000004.12:89689164-89689187,-,
+chr4:89781609-89781649,chr4:89781609-89781649.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,N/A,N/A,1,NC_000004.12:89781620-89781643,-,
+chr4:89860483-89860523,chr4:89860483-89860523.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,N/A,N/A,1,NC_000004.12:89860499-89860522,-,
+chr6:32613942-32613982,chr6:32613942-32613982.0,TTTNCATTGTTGGAAAAAAA,TTTNCATTGTTGGAAAAAAA,ATA,116,2:6 | 3:110,N/A,N/A,1,NC_000006.12:32613942-32613965,+,
+chr6:3727648-3727688,chr6:3727648-3727688.0,TTNGTTTTCAGAAATCATGA,TCATGATTTCTGAAAACNAA,GGT,15,2:0 | 3:15,N/A,N/A,1,NC_000006.12:3727650-3727673,-,"PX domain containing 1, transcript variant X1"
+chr6:3833509-3833549,chr6:3833509-3833549.0,TTTNCCCAGTGCATCCTGTG,TTTNCCCAGTGCATCCTGTG,TTT,29,2:1 | 3:28,N/A,N/A,1,NC_000006.12:3833524-3833547,+,
+chr6:3844081-3844121,chr6:3844081-3844121.0,TTTNCGGGGGTCTGTTATTG,TTTNCGGGGGTCTGTTATTG,TTG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3844095-3844118,+,
+chr6:4032335-4032375,chr6:4032335-4032375.0,TTNTAATTGGGGATTTTTTC,GAAAAAATCCCCAATTANAA,CTA,31,2:1 | 3:30,N/A,N/A,1,NC_000006.12:4032335-4032358,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:4032335-4032375,chr6:4032335-4032375.1,TTNATTTATAATTGGGGATT,AATCCCCAATTATAAATNAA,TTT,78,2:3 | 3:75,N/A,N/A,2,NC_000006.12:4032340-4032363,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:4034573-4034613,chr6:4034573-4034613.0,TTTNTTACCAGGATACCATA,TTTNTTACCAGGATACCATA,TAG,7,2:0 | 3:7,N/A,N/A,1,NC_000006.12:4034575-4034598,+,
+chr6:4095261-4095301,chr6:4095261-4095301.0,TTNGTTGAGCCTGTAACACC,GGTGTTACAGGCTCAACNAA,TTG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:4095277-4095300,-,
+chr6:4095261-4095301,chr6:4095261-4095301.1,TTNTTGAGCCTGTAACACCT,AGGTGTTACAGGCTCAANAA,TGA,2,2:0 | 3:2,N/A,N/A,2,NC_000006.12:4095276-4095299,-,
+chr6:4095261-4095301,chr6:4095261-4095301.2,TTTNAAGGTGTTACAGGCTC,TTTNAAGGTGTTACAGGCTC,AAC,3,2:0 | 3:3,N/A,N/A,3,NC_000006.12:4095274-4095297,+,
+chr6:4126765-4126805,chr6:4126765-4126805.0,TTNAGTGGCTCTTAGAATAA,TTATTCTAAGAGCCACTNAA,AGA,33,2:1 | 3:32,N/A,N/A,1,NC_000006.12:4126765-4126788,-,
+chr6:3613384-3613424,chr6:3613384-3613424.0,TTTNGTCCAATTACTTCGTT,TTTNGTCCAATTACTTCGTT,GTA,2,2:0 | 3:2,N/A,N/A,1,NC_000006.12:3613384-3613407,+,
+chr6:3647081-3647121,chr6:3647081-3647121.0,TTNTGGGCTCTCTTCATGGG,CCCATGAAGAGAGCCCANAA,CAC,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3647098-3647121,-,
+chr6:3657956-3657996,chr6:3657956-3657996.0,TTTNTACAAGGAGGCAGTGA,TTTNTACAAGGAGGCAGTGA,CTC,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:3657965-3657988,+,
+chr6:3701295-3701335,chr6:3701295-3701335.0,TTNAGCCTGAGTCTGACTCC,GGAGTCAGACTCAGGCTNAA,GAT,22,2:0 | 3:22,N/A,N/A,1,NC_000006.12:3701296-3701319,-,
+chr6:3846640-3846680,chr6:3846640-3846680.0,TTNGGAGGAGGTAAAATATC,GATATTTTACCTCCTCCNAA,AAC,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:3846657-3846680,-,
+chr6:3852305-3852345,chr6:3852305-3852345.0,TTTNAACTTCCCAATTCAAA,TTTNAACTTCCCAATTCAAA,GGT,7,2:1 | 3:6,N/A,N/A,1,NC_000006.12:3852315-3852338,+,
+chr6:3852305-3852345,chr6:3852305-3852345.1,TTNAATTGGGAAGTTTAAAA,TTTTAAACTTCCCAATTNAA,GCT,22,2:1 | 3:21,N/A,N/A,2,NC_000006.12:3852311-3852334,-,
+chr6:3852305-3852345,chr6:3852305-3852345.2,TTTNAAACTTCCCAATTCAA,TTTNAAACTTCCCAATTCAA,AGG,23,2:1 | 3:22,N/A,N/A,3,NC_000006.12:3852314-3852337,+,
+chr6:3711021-3711061,chr6:3711021-3711061.0,TTNTGGAACAATCCATATTA,TAATATGGATTGTTCCANAA,GAG,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3711029-3711052,-,
+chr6:3711021-3711061,chr6:3711021-3711061.1,TTNGGAACAATCCATATTAG,CTAATATGGATTGTTCCNAA,AGA,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3711028-3711051,-,
+chr6:3711021-3711061,chr6:3711021-3711061.2,TTNGAACAATCCATATTAGA,TCTAATATGGATTGTTCNAA,GAT,9,2:1 | 3:8,N/A,N/A,3,NC_000006.12:3711027-3711050,-,
+chr6:3721890-3721930,chr6:3721890-3721930.0,TTNCTGTTACTAGTCCGTGC,GCACGGACTAGTAACAGNAA,GCA,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3721896-3721919,-,
+chr6:3721890-3721930,chr6:3721890-3721930.1,TTNACTGTTACTAGTCCGTG,CACGGACTAGTAACAGTNAA,CGC,0,2:0 | 3:0,N/A,N/A,2,NC_000006.12:3721897-3721920,-,
+chr6:3765258-3765298,chr6:3765258-3765298.0,TTNTTTCAGACAGAAGGGTG,CACCCTTCTGTCTGAAANAA,ACG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3765259-3765282,-,
+chr6:4029656-4029696,chr6:4029656-4029696.0,TTNCTGAGAAAGGACAGGGA,TCCCTGTCCTTTCTCAGNAA,TTA,14,2:0 | 3:14,N/A,N/A,1,NC_000006.12:4029666-4029689,-,
+chr6:3737167-3737207,chr6:3737167-3737207.0,TTNTCCCCAGTATTCTAGAT,ATCTAGAATACTGGGGANAA,CGG,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3737183-3737206,-,"PX domain containing 1, transcript variant X1"
+chr6:3747759-3747799,chr6:3747759-3747799.0,TTTNTCTTGTTACTATTGGA,TTTNTCTTGTTACTATTGGA,TTT,32,2:0 | 3:32,N/A,N/A,1,NC_000006.12:3747767-3747790,+,
+chr6:3595319-3595359,chr6:3595319-3595359.0,TTNTATCCTGGCTTGTGGCC,GGCCACAAGCCAGGATANAA,GGG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3595331-3595354,-,
+chr6:3629049-3629089,chr6:3629049-3629089.0,TTTNCAAGCACCAGCAGCAG,TTTNCAAGCACCAGCAGCAG,ACA,7,2:0 | 3:7,N/A,N/A,1,NC_000006.12:3629062-3629085,+,
+chr6:3684094-3684134,chr6:3684094-3684134.0,TTTNAAGGCTTCTTTGAGTT,TTTNAAGGCTTCTTTGAGTT,GCC,9,2:0 | 3:9,N/A,N/A,1,NC_000006.12:3684111-3684134,+,
+chr6:3684094-3684134,chr6:3684094-3684134.1,TTTNAAAGGCTTCTTTGAGT,TTTNAAAGGCTTCTTTGAGT,TGC,10,2:0 | 3:10,N/A,N/A,2,NC_000006.12:3684110-3684133,+,
+chr6:3684094-3684134,chr6:3684094-3684134.2,TTTNTAAAGGCTTCTTTGAG,TTTNTAAAGGCTTCTTTGAG,TTG,16,2:0 | 3:16,N/A,N/A,3,NC_000006.12:3684109-3684132,+,
+chr6:3807616-3807656,chr6:3807616-3807656.0,TTTNGGCTTCATAGTACCTT,TTTNGGCTTCATAGTACCTT,GGC,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3807631-3807654,+,
+chr6:3807616-3807656,chr6:3807616-3807656.1,TTTNGGGCTTCATAGTACCT,TTTNGGGCTTCATAGTACCT,TGG,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3807630-3807653,+,
+chr6:3807616-3807656,chr6:3807616-3807656.2,TTTNAATAGCGGTGTTTTGG,TTTNAATAGCGGTGTTTTGG,GCT,6,2:0 | 3:6,N/A,N/A,3,NC_000006.12:3807616-3807639,+,
+chr6:3807616-3807656,chr6:3807616-3807656.3,TTTNATAGCGGTGTTTTGGG,TTTNATAGCGGTGTTTTGGG,CTT,7,2:0 | 3:7,N/A,N/A,4,NC_000006.12:3807617-3807640,+,
+chr6:3816256-3816296,chr6:3816256-3816296.0,TTTNTAATATGTCACAGTTT,TTTNTAATATGTCACAGTTT,TGA,48,2:1 | 3:47,N/A,N/A,1,NC_000006.12:3816268-3816291,+,
+chr6:3876225-3876265,chr6:3876225-3876265.0,TTNGCCCTGAAGAGCCAAGA,TCTTGGCTCTTCAGGGCNAA,TGT,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:3876231-3876254,-,
+chr6:3721931-3721971,chr6:3721931-3721971.0,TTNGCTCCCCAACCTCATCC,GGATGAGGTTGGGGAGCNAA,CCT,5,2:0 | 3:5,N/A,N/A,1,NC_000006.12:3721942-3721965,-,
+chr6:4010353-4010393,chr6:4010353-4010393.0,TTNTGATATTTCTACTGCCT,AGGCAGTAGAAATATCANAA,GGA,18,2:1 | 3:17,N/A,N/A,1,NC_000006.12:4010353-4010376,-,
+chr6:4018965-4019005,chr6:4018965-4019005.0,TTTNATTGTAACTCCCCCTG,TTTNATTGTAACTCCCCCTG,CCG,6,2:0 | 3:6,N/A,N/A,1,NC_000006.12:4018980-4019003,+,
+chr6:4018965-4019005,chr6:4018965-4019005.1,TTTNCTTTAATTGTAACTCC,TTTNCTTTAATTGTAACTCC,CCC,7,2:0 | 3:7,N/A,N/A,2,NC_000006.12:4018975-4018998,+,
+chr6:4113603-4113643,chr6:4113603-4113643.0,TTTNCTAAACAGTCTCACTG,TTTNCTAAACAGTCTCACTG,CAG,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:4113613-4113636,+,
+chr7:23229425-23229465,chr7:23229425-23229465.0,TTNGTAACTCCAAATTACAA,TTGTAATTTGGAGTTACNAA,CAG,7,2:0 | 3:7,N/A,N/A,1,NC_000007.14:23229425-23229448,-,
+chr7:23229425-23229465,chr7:23229425-23229465.1,TTNTTGTAACTCCAAATTAC,GTAATTTGGAGTTACAANAA,AAC,8,2:0 | 3:8,N/A,N/A,2,NC_000007.14:23229427-23229450,-,
+chr7:23229425-23229465,chr7:23229425-23229465.2,TTNTGTAACTCCAAATTACA,TGTAATTTGGAGTTACANAA,ACA,16,2:0 | 3:16,N/A,N/A,3,NC_000007.14:23229426-23229449,-,
+chr7:23229425-23229465,chr7:23229425-23229465.3,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,N/A,N/A,4,NC_000007.14:23229434-23229457,+,
+chr8:16840049-16840089,chr8:16840049-16840089.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,N/A,N/A,1,NC_000008.11:16840056-16840079,+,
+chr8:27545239-27545279,chr8:27545239-27545279.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,N/A,N/A,1,NC_000008.11:27545253-27545276,+,
+chr8:27545239-27545279,chr8:27545239-27545279.1,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,N/A,N/A,2,NC_000008.11:27545241-27545264,-,
+chr8:27597144-27597184,chr8:27597144-27597184.0,TTNTAGCTTAGAATATTCTT,AAGAATATTCTAAGCTANAA,AAG,25,2:2 | 3:23,N/A,N/A,1,NC_000008.11:27597148-27597171,-,"epoxide hydrolase 2, transcript variant X1;clusterin, transcript variant 4"
+chr8:27654269-27654309,chr8:27654269-27654309.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,N/A,N/A,1,NC_000008.11:27654282-27654305,-,
+chr8:27654269-27654309,chr8:27654269-27654309.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,N/A,N/A,2,NC_000008.11:27654283-27654306,-,
+chr9:27491923-27491963,chr9:27491923-27491963.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,N/A,N/A,1,NC_000009.12:27491929-27491952,+,
+chr9:27491923-27491963,chr9:27491923-27491963.1,TTTNTTTGATATCACTACTT,TTTNTTTGATATCACTACTT,TTA,52,2:1 | 3:51,N/A,N/A,2,NC_000009.12:27491925-27491948,+,
+chr9:27511265-27511305,chr9:27511265-27511305.0,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,N/A,N/A,1,NC_000009.12:27511271-27511294,-,
+chr9:27511265-27511305,chr9:27511265-27511305.1,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,N/A,N/A,2,NC_000009.12:27511270-27511293,-,
+chr9:27543610-27543650,chr9:27543610-27543650.0,TTTNGAGGTTTTCCCAGATA,TTTNGAGGTTTTCCCAGATA,TTT,25,2:4 | 3:21,N/A,N/A,1,NC_000009.12:27543613-27543636,+,uncharacterized LOC107987057
+chr9:27543610-27543650,chr9:27543610-27543650.1,TTTNAGGTTTTCCCAGATAT,TTTNAGGTTTTCCCAGATAT,TTG,27,2:1 | 3:26,N/A,N/A,2,NC_000009.12:27543614-27543637,+,uncharacterized LOC107987057
+chr9:27543610-27543650,chr9:27543610-27543650.2,TTTNTGAGGTTTTCCCAGAT,TTTNTGAGGTTTTCCCAGAT,ATT,28,2:4 | 3:24,N/A,N/A,3,NC_000009.12:27543612-27543635,+,uncharacterized LOC107987057
+chr9:27543610-27543650,chr9:27543610-27543650.3,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,N/A,N/A,4,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+chr9:27543610-27543650,chr9:27543610-27543650.4,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,N/A,N/A,5,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+chr9:27558418-27558458,chr9:27558418-27558458.0,TTNGAGACTCTTTATAGACA,TGTCTATAAAGAGTCTCNAA,AAT,5,2:0 | 3:5,N/A,N/A,1,NC_000009.12:27558420-27558443,-,
+chr9:27558418-27558458,chr9:27558418-27558458.1,TTNAGACTCTTTATAGACAA,TTGTCTATAAAGAGTCTNAA,ATC,7,2:0 | 3:7,N/A,N/A,2,NC_000009.12:27558419-27558442,-,
+chr9:27558418-27558458,chr9:27558418-27558458.2,TTNTGAGACTCTTTATAGAC,GTCTATAAAGAGTCTCANAA,AAA,17,2:0 | 3:17,N/A,N/A,3,NC_000009.12:27558421-27558444,-,
+chr9:27558418-27558458,chr9:27558418-27558458.3,TTTNTCTATAAAGAGTCTCA,TTTNTCTATAAAGAGTCTCA,AAA,25,2:2 | 3:23,N/A,N/A,4,NC_000009.12:27558421-27558444,+,
+chr9:27558418-27558458,chr9:27558418-27558458.4,TTNCTAAAATCATTTTTGAG,CTCAAAAATGATTTTAGNAA,ACT,48,2:3 | 3:45,N/A,N/A,5,NC_000009.12:27558434-27558457,-,
+chr9:27558418-27558458,chr9:27558418-27558458.5,TTNTAAAATCATTTTTGAGA,TCTCAAAAATGATTTTANAA,CTC,71,2:3 | 3:68,N/A,N/A,6,NC_000009.12:27558433-27558456,-,
+chr9:27584040-27584080,chr9:27584040-27584080.0,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,N/A,N/A,1,NC_000009.12:27584050-27584073,+,

data/GuideScan2/GuideScan2_40bp_cpf1.csv

@@ -0,0 +1,153 @@
+query,Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+rs71630614,chr1:156102405-156102445,chr1:156102405-156102445.0,TTTNAGTCCTGGTTCTGTCA,TTTNAGTCCTGGTTCTGTCA,CCT,70,2:2 | 3:68,,,1,NC_000001.11:156102405-156102428,+,
+rs4575098,chr1:161185581-161185621,chr1:161185581-161185621.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,,,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+rs55636820,chr2:127054659-127054699,chr2:127054659-127054699.0,TTNAACCCAAGTGCCCCGGG,CCCGGGGCACTTGGGTTNAA,TGG,1,2:0 | 3:1,,,1,NC_000002.12:127054673-127054696,-,
+rs55636820,chr2:127054659-127054699,chr2:127054659-127054699.1,TTNACCCAAGTGCCCCGGGT,ACCCGGGGCACTTGGGTNAA,GGT,2,2:0 | 3:2,,,2,NC_000002.12:127054672-127054695,-,
+rs1060743,chr2:127068936-127068976,chr2:127068936-127068976.0,TTTNGGCAGTTTGAAGGGAC,TTTNGGCAGTTTGAAGGGAC,TCG,0,2:0 | 3:0,,,1,NC_000002.12:127068949-127068972,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068936-127068976,chr2:127068936-127068976.1,TTTNGCAGTTTGAAGGGACT,TTTNGCAGTTTGAAGGGACT,CGT,0,2:0 | 3:0,,,2,NC_000002.12:127068950-127068973,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068936-127068976,chr2:127068936-127068976.2,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,,,3,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+rs11693422,chr2:127084565-127084605,chr2:127084565-127084605.0,TTTNAGCGTTCCCTCATGCT,TTTNAGCGTTCCCTCATGCT,CAG,2,2:0 | 3:2,,,1,NC_000002.12:127084581-127084604,+,
+rs4663096,chr2:127104169-127104209,chr2:127104169-127104209.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,,,1,NC_000002.12:127104176-127104199,-,
+rs7594230,chr2:127115971-127116011,chr2:127115971-127116011.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs7594230,chr2:127115971-127116011,chr2:127115971-127116011.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs35968837,chr2:127133336-127133376,chr2:127133336-127133376.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,,,1,NC_000002.12:127133344-127133367,-,
+rs57891859,chr2:134707025-134707065,chr2:134707025-134707065.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707025-134707065,chr2:134707025-134707065.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707025-134707065,chr2:134707025-134707065.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs17783233,chr4:982789-982829,chr4:982789-982829.0,TTNTTTCAGTGAGGTGTGGG,CCCACACCTCACTGAAANAA,GAG,17,2:1 | 3:16,,,1,NC_000004.12:982789-982812,-,
+rs72657707,chr4:89657339-89657379,chr4:89657339-89657379.0,TTNATTGTTCACTGAATCTT,AAGATTCAGTGAACAATNAA,AAA,28,2:0 | 3:28,,,1,NC_000004.12:89657343-89657366,-,
+rs72657707,chr4:89657339-89657379,chr4:89657339-89657379.1,TTTNAGATTCAGTGAACAAT,TTTNAGATTCAGTGAACAAT,GAA,29,2:1 | 3:28,,,2,NC_000004.12:89657343-89657366,+,
+rs114088559,chr4:89689155-89689195,chr4:89689155-89689195.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,,,1,NC_000004.12:89689164-89689187,-,
+rs3775434,chr4:89781609-89781649,chr4:89781609-89781649.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,,,1,NC_000004.12:89781620-89781643,-,
+rs6841352,chr4:89860483-89860523,chr4:89860483-89860523.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,,,1,NC_000004.12:89860499-89860522,-,
+rs6841352,chr4:89860483-89860523,chr4:89860483-89860523.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,,,1,NC_000004.12:89860499-89860522,-,
+rs1637190,chr7:23229425-23229465,chr7:23229425-23229465.0,TTNGTAACTCCAAATTACAA,TTGTAATTTGGAGTTACNAA,CAG,7,2:0 | 3:7,,,1,NC_000007.14:23229425-23229448,-,
+rs1637190,chr7:23229425-23229465,chr7:23229425-23229465.1,TTNTTGTAACTCCAAATTAC,GTAATTTGGAGTTACAANAA,AAC,8,2:0 | 3:8,,,2,NC_000007.14:23229427-23229450,-,
+rs1637190,chr7:23229425-23229465,chr7:23229425-23229465.2,TTNTGTAACTCCAAATTACA,TGTAATTTGGAGTTACANAA,ACA,16,2:0 | 3:16,,,3,NC_000007.14:23229426-23229449,-,
+rs1637190,chr7:23229425-23229465,chr7:23229425-23229465.3,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,,,4,NC_000007.14:23229434-23229457,+,
+rs620490,chr8:16840049-16840089,chr8:16840049-16840089.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840049-16840089,chr8:16840049-16840089.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840049-16840089,chr8:16840049-16840089.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.1,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,2,NC_000008.11:27545241-27545264,-,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.1,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,2,NC_000008.11:27545241-27545264,-,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545239-27545279,chr8:27545239-27545279.1,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,2,NC_000008.11:27545241-27545264,-,
+rs9331950,chr8:27597144-27597184,chr8:27597144-27597184.0,TTNTAGCTTAGAATATTCTT,AAGAATATTCTAAGCTANAA,AAG,25,2:2 | 3:23,,,1,NC_000008.11:27597148-27597171,-,"epoxide hydrolase 2, transcript variant X1;clusterin, transcript variant 4"
+rs35112405,chr8:27654269-27654309,chr8:27654269-27654309.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,,,1,NC_000008.11:27654282-27654305,-,
+rs35112405,chr8:27654269-27654309,chr8:27654269-27654309.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,,,2,NC_000008.11:27654283-27654306,-,
+rs35112405,chr8:27654269-27654309,chr8:27654269-27654309.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,,,1,NC_000008.11:27654282-27654305,-,
+rs35112405,chr8:27654269-27654309,chr8:27654269-27654309.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,,,2,NC_000008.11:27654283-27654306,-,
+rs139185008,chr9:27491923-27491963,chr9:27491923-27491963.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,,,1,NC_000009.12:27491929-27491952,+,
+rs139185008,chr9:27491923-27491963,chr9:27491923-27491963.1,TTTNTTTGATATCACTACTT,TTTNTTTGATATCACTACTT,TTA,52,2:1 | 3:51,,,2,NC_000009.12:27491925-27491948,+,
+rs2484314,chr9:27511265-27511305,chr9:27511265-27511305.0,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,,,1,NC_000009.12:27511271-27511294,-,
+rs2484314,chr9:27511265-27511305,chr9:27511265-27511305.1,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,,,2,NC_000009.12:27511270-27511293,-,
+rs147599399,chr9:27543610-27543650,chr9:27543610-27543650.0,TTTNGAGGTTTTCCCAGATA,TTTNGAGGTTTTCCCAGATA,TTT,25,2:4 | 3:21,,,1,NC_000009.12:27543613-27543636,+,uncharacterized LOC107987057
+rs147599399,chr9:27543610-27543650,chr9:27543610-27543650.1,TTTNAGGTTTTCCCAGATAT,TTTNAGGTTTTCCCAGATAT,TTG,27,2:1 | 3:26,,,2,NC_000009.12:27543614-27543637,+,uncharacterized LOC107987057
+rs147599399,chr9:27543610-27543650,chr9:27543610-27543650.2,TTTNTGAGGTTTTCCCAGAT,TTTNTGAGGTTTTCCCAGAT,ATT,28,2:4 | 3:24,,,3,NC_000009.12:27543612-27543635,+,uncharacterized LOC107987057
+rs147599399,chr9:27543610-27543650,chr9:27543610-27543650.3,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,,,4,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+rs147599399,chr9:27543610-27543650,chr9:27543610-27543650.4,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,,,5,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.0,TTNGAGACTCTTTATAGACA,TGTCTATAAAGAGTCTCNAA,AAT,5,2:0 | 3:5,,,1,NC_000009.12:27558420-27558443,-,
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.1,TTNAGACTCTTTATAGACAA,TTGTCTATAAAGAGTCTNAA,ATC,7,2:0 | 3:7,,,2,NC_000009.12:27558419-27558442,-,
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.2,TTNTGAGACTCTTTATAGAC,GTCTATAAAGAGTCTCANAA,AAA,17,2:0 | 3:17,,,3,NC_000009.12:27558421-27558444,-,
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.3,TTTNTCTATAAAGAGTCTCA,TTTNTCTATAAAGAGTCTCA,AAA,25,2:2 | 3:23,,,4,NC_000009.12:27558421-27558444,+,
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.4,TTNCTAAAATCATTTTTGAG,CTCAAAAATGATTTTAGNAA,ACT,48,2:3 | 3:45,,,5,NC_000009.12:27558434-27558457,-,
+rs17696570,chr9:27558418-27558458,chr9:27558418-27558458.5,TTNTAAAATCATTTTTGAGA,TCTCAAAAATGATTTTANAA,CTC,71,2:3 | 3:68,,,6,NC_000009.12:27558433-27558456,-,
+rs34555425,chr9:27584040-27584080,chr9:27584040-27584080.0,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,,,1,NC_000009.12:27584050-27584073,+,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.0,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,,,1,NC_000010.11:59908052-59908075,+,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.1,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,,,2,NC_000010.11:59908053-59908076,+,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.2,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,3,NC_000010.11:59908047-59908070,-,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.0,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,,,1,NC_000010.11:59908052-59908075,+,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.1,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,,,2,NC_000010.11:59908053-59908076,+,
+rs1171832,chr10:59908038-59908078,chr10:59908038-59908078.2,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,3,NC_000010.11:59908047-59908070,-,
+rs188789342,chr10:119612795-119612835,chr10:119612795-119612835.0,TTTNCTGAACAGGTGGCGGG,TTTNCTGAACAGGTGGCGGG,CGC,0,2:0 | 3:0,,,1,NC_000010.11:119612799-119612822,+,
+rs10769263,chr11:47395611-47395651,chr11:47395611-47395651.0,TTNTTATAGCCATGAAATGC,GCATTTCATGGCTATAANAA,TCT,14,2:0 | 3:14,,,1,NC_000011.10:47395615-47395638,-,"Spi-1 proto-oncogene, transcript variant X1"
+rs10769263,chr11:47395611-47395651,chr11:47395611-47395651.1,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,,,2,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+rs10769263,chr11:47395611-47395651,chr11:47395611-47395651.2,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,,,3,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+rs652303,chr11:60202553-60202593,chr11:60202553-60202593.0,TTNCGGTTTGGGTAATAGCT,AGCTATTACCCAAACCGNAA,CTC,2,2:0 | 3:2,,,1,NC_000011.10:60202555-60202578,-,
+rs652303,chr11:60202553-60202593,chr11:60202553-60202593.1,TTNGGTTTGGGTAATAGCTC,GAGCTATTACCCAAACCNAA,TCA,4,2:0 | 3:4,,,2,NC_000011.10:60202554-60202577,-,
+rs7945487,chr11:60322885-60322925,chr11:60322885-60322925.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,,,1,NC_000011.10:60322902-60322925,-,
+rs7945487,chr11:60322885-60322925,chr11:60322885-60322925.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,,,1,NC_000011.10:60322902-60322925,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,,,1,NC_000011.10:86158687-86158710,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,2,NC_000011.10:86158686-86158709,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,,,3,NC_000011.10:86158688-86158711,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,,,1,NC_000011.10:86158687-86158710,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,2,NC_000011.10:86158686-86158709,-,
+rs7113976,chr11:86158674-86158714,chr11:86158674-86158714.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,,,3,NC_000011.10:86158688-86158711,-,
+rs11603136,chr11:86163259-86163299,chr11:86163259-86163299.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,,,1,NC_000011.10:86163269-86163292,+,
+rs11603136,chr11:86163259-86163299,chr11:86163259-86163299.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,,,2,NC_000011.10:86163270-86163293,+,
+rs11603136,chr11:86163259-86163299,chr11:86163259-86163299.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,,,3,NC_000011.10:86163264-86163287,+,
+rs11223616,chr11:133902922-133902962,chr11:133902922-133902962.0,TTNATATAAGCCATGGGAGG,CCTCCCATGGCTTATATNAA,GGC,1,2:0 | 3:1,,,1,NC_000011.10:133902925-133902948,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902922-133902962,chr11:133902922-133902962.1,TTNCATATAAGCCATGGGAG,CTCCCATGGCTTATATGNAA,GGG,1,2:0 | 3:1,,,2,NC_000011.10:133902926-133902949,-,immunoglobulin superfamily member 9B
+rs564123,chr11:133949501-133949541,chr11:133949501-133949541.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs564123,chr11:133949501-133949541,chr11:133949501-133949541.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,,,2,NC_000011.10:133949502-133949525,-,
+rs564123,chr11:133949501-133949541,chr11:133949501-133949541.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs564123,chr11:133949501-133949541,chr11:133949501-133949541.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,,,2,NC_000011.10:133949502-133949525,-,
+rs893136227,chr12:39936290-39936330,chr12:39936290-39936330.0,TTNGAGGTACTTCTAGTTCA,TGAACTAGAAGTACCTCNAA,AGC,2,2:0 | 3:2,,,1,NC_000012.12:39936307-39936330,-,
+rs28903073,chr12:40259687-40259727,chr12:40259687-40259727.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,,,1,NC_000012.12:40259693-40259716,-,
+rs28903073,chr12:40259687-40259727,chr12:40259687-40259727.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,,,2,NC_000012.12:40259699-40259722,-,
+rs28903073,chr12:40259687-40259727,chr12:40259687-40259727.2,TTTNTGTCGACTAAATGTAA,TTTNTGTCGACTAAATGTAA,ATC,5,2:0 | 3:5,,,3,NC_000012.12:40259702-40259725,+,
+rs1002038473,chr12:41036408-41036448,chr12:41036408-41036448.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,,,1,NC_000012.12:41036409-41036432,-,
+rs1002038473,chr12:41036408-41036448,chr12:41036408-41036448.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,,,1,NC_000012.12:41036409-41036432,-,
+rs764179564,chr12:41195592-41195632,chr12:41195592-41195632.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,,,1,NC_000012.12:41195608-41195631,-,
+rs764179564,chr12:41195592-41195632,chr12:41195592-41195632.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,,,1,NC_000012.12:41195608-41195631,-,
+rs61977311,chr14:92464080-92464120,chr14:92464080-92464120.0,TTTNAGAGACCAAATAGAGC,TTTNAGAGACCAAATAGAGC,ATC,5,2:0 | 3:5,,,1,NC_000014.9:92464095-92464118,+,
+rs61977311,chr14:92464080-92464120,chr14:92464080-92464120.1,TTTNAAGAGACCAAATAGAG,TTTNAAGAGACCAAATAGAG,CAT,8,2:0 | 3:8,,,2,NC_000014.9:92464094-92464117,+,
+rs61977311,chr14:92464080-92464120,chr14:92464080-92464120.2,TTTNTAAGAGACCAAATAGA,TTTNTAAGAGACCAAATAGA,GCA,10,2:0 | 3:10,,,3,NC_000014.9:92464093-92464116,+,
+rs61977311,chr14:92464080-92464120,chr14:92464080-92464120.3,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,,,4,NC_000014.9:92464085-92464108,-,
+rs61977311,chr14:92464080-92464120,chr14:92464080-92464120.4,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,,,5,NC_000014.9:92464092-92464115,+,
+rs3098199,chr15:50529040-50529080,chr15:50529040-50529080.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,,,1,NC_000015.10:50529047-50529070,-,
+rs3098199,chr15:50529040-50529080,chr15:50529040-50529080.1,TTTNCTTCAGGAAATCTTTA,TTTNCTTCAGGAAATCTTTA,TTG,124,2:4 | 3:120,,,2,NC_000015.10:50529057-50529080,+,
+rs144908353,chr19:44575184-44575224,chr19:44575184-44575224.0,TTTNAGCAATAGGCGCTAAT,TTTNAGCAATAGGCGCTAAT,ATT,6,2:0 | 3:6,,,1,NC_000019.10:44575186-44575209,+,
+rs111780744,chr19:44663663-44663703,chr19:44663663-44663703.0,TTNGCGTCTTGCTTCCATGC,GCATGGAAGCAAGACGCNAA,CTC,4,2:0 | 3:4,,,1,NC_000019.10:44663666-44663689,-,"PVR cell adhesion molecule, transcript variant 1"
+rs2965102,chr19:44732668-44732708,chr19:44732668-44732708.0,TTNCACAGGATGGAACCTGA,TCAGGTTCCATCCTGTGNAA,GGA,14,2:0 | 3:14,,,1,NC_000019.10:44732681-44732704,-,
+rs62117205,chr19:44751988-44752028,chr19:44751988-44752028.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,,,1,NC_000019.10:44752005-44752028,-,
+rs62117205,chr19:44751988-44752028,chr19:44751988-44752028.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,,,1,NC_000019.10:44752005-44752028,-,
+rs1466435,chr19:44839537-44839577,chr19:44839537-44839577.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,,,1,NC_000019.10:44839548-44839571,-,
+rs41290100,chr19:44867663-44867703,chr19:44867663-44867703.0,TTNCATTCCTGGAACGCGCC,GGCGCGTTCCAGGAATGNAA,CAG,3,2:0 | 3:3,,,1,NC_000019.10:44867676-44867699,-,
+rs34278513,chr19:44874866-44874906,chr19:44874866-44874906.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,,,1,NC_000019.10:44874872-44874895,-,
+rs34278513,chr19:44874866-44874906,chr19:44874866-44874906.1,TTNCTCTTTGGCTCCGTGCC,GGCACGGAGCCAAAGAGNAA,TTG,1,2:0 | 3:1,,,2,NC_000019.10:44874879-44874902,-,
+rs34278513,chr19:44874866-44874906,chr19:44874866-44874906.2,TTNCCTCTTTGGCTCCGTGC,GCACGGAGCCAAAGAGGNAA,CTT,11,2:0 | 3:11,,,3,NC_000019.10:44874880-44874903,-,
+rs73050293,chr19:44876468-44876508,chr19:44876468-44876508.0,TTNTGCAGGCATTATCTGAA,TTCAGATAATGCCTGCANAA,GGC,4,2:0 | 3:4,,,1,NC_000019.10:44876482-44876505,-,
+rs11668861,chr19:44877692-44877732,chr19:44877692-44877732.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs11668861,chr19:44877692-44877732,chr19:44877692-44877732.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs76692773,chr19:44890933-44890973,chr19:44890933-44890973.0,TTNGCCACGCCCGCTGAGGC,GCCTCAGCGGGCGTGGCNAA,ATC,0,2:0 | 3:0,,,1,NC_000019.10:44890948-44890971,-,
+rs76692773,chr19:44890933-44890973,chr19:44890933-44890973.1,TTNCCACGCCCGCTGAGGCA,TGCCTCAGCGGGCGTGGNAA,TCG,2,2:0 | 3:2,,,2,NC_000019.10:44890947-44890970,-,
+rs75627662,chr19:44910298-44910338,chr19:44910298-44910338.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,,,1,NC_000019.10:44910300-44910323,+,
+rs75627662,chr19:44910298-44910338,chr19:44910298-44910338.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,,,1,NC_000019.10:44910300-44910323,+,
+rs4803771,chr19:44924370-44924410,chr19:44924370-44924410.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924370-44924410,chr19:44924370-44924410.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs4803771,chr19:44924370-44924410,chr19:44924370-44924410.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924370-44924410,chr19:44924370-44924410.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs2239375,chr19:44956573-44956613,chr19:44956573-44956613.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,,,1,NC_000019.10:44956576-44956599,-,
+rs2239375,chr19:44956573-44956613,chr19:44956573-44956613.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,,,1,NC_000019.10:44956576-44956599,-,
+rs145639166,chr19:44965851-44965891,chr19:44965851-44965891.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,,,1,NC_000019.10:44965851-44965874,+,
+rs145639166,chr19:44965851-44965891,chr19:44965851-44965891.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,,,1,NC_000019.10:44965851-44965874,+,
+rs76856627,chr19:45040476-45040516,chr19:45040476-45040516.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,,,1,NC_000019.10:45040485-45040508,+,
+rs112481437,chr19:45045856-45045896,chr19:45045856-45045896.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,,,1,NC_000019.10:45045858-45045881,+,
+rs112481437,chr19:45045856-45045896,chr19:45045856-45045896.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,,,1,NC_000019.10:45045858-45045881,+,
+rs78073763,chr19:45146559-45146599,chr19:45146559-45146599.0,TTTNTCCGGTCGGTCTGCGA,TTTNTCCGGTCGGTCTGCGA,TGA,0,2:0 | 3:0,,,1,NC_000019.10:45146575-45146598,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146559-45146599,chr19:45146559-45146599.1,TTTNCCGGTCGGTCTGCGAT,TTTNCCGGTCGGTCTGCGAT,GAG,0,2:0 | 3:0,,,2,NC_000019.10:45146576-45146599,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs1005451,chr19:45148800-45148840,chr19:45148800-45148840.0,TTTNTTACTGTTGGGGGTTG,TTTNTTACTGTTGGGGGTTG,AAT,34,2:1 | 3:33,,,1,NC_000019.10:45148816-45148839,+,
+rs73566243,chr19:45193741-45193781,chr19:45193741-45193781.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,,,1,NC_000019.10:45193747-45193770,+,
+rs73566243,chr19:45193741-45193781,chr19:45193741-45193781.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,,,2,NC_000019.10:45193748-45193771,+,
+rs117783785,chr19:45195908-45195948,chr19:45195908-45195948.0,TTNATTCTGATTAGAATGCT,AGCATTCTAATCAGAATNAA,CTC,19,2:0 | 3:19,,,1,NC_000019.10:45195922-45195945,-,
+rs117783785,chr19:45195908-45195948,chr19:45195908-45195948.1,TTNCATTCTGATTAGAATGC,GCATTCTAATCAGAATGNAA,TCT,33,2:3 | 3:30,,,2,NC_000019.10:45195923-45195946,-,
+rs11667509,chr19:45212913-45212953,chr19:45212913-45212953.0,TTNACCCAACCCCAAACTCC,GGAGTTTGGGGTTGGGTNAA,CTG,6,2:1 | 3:5,,,1,NC_000019.10:45212916-45212939,-,exocyst complex component 3 like 2
+rs11667509,chr19:45212913-45212953,chr19:45212913-45212953.1,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,,,2,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+rs11667509,chr19:45212913-45212953,chr19:45212913-45212953.2,TTNCACCCAACCCCAAACTC,GAGTTTGGGGTTGGGTGNAA,CCT,7,2:0 | 3:7,,,3,NC_000019.10:45212917-45212940,-,exocyst complex component 3 like 2
+rs183442275,chr19:45303274-45303314,chr19:45303274-45303314.0,TTTNTAAGTTATTACACCCC,TTTNTAAGTTATTACACCCC,GAC,0,2:0 | 3:0,,,1,NC_000019.10:45303278-45303301,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs183442275,chr19:45303274-45303314,chr19:45303274-45303314.1,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,,,2,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs183442275,chr19:45303274-45303314,chr19:45303274-45303314.2,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,,,3,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs12973246,chr19:45332925-45332965,chr19:45332925-45332965.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs12973246,chr19:45332925-45332965,chr19:45332925-45332965.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs77988534,chr19:45341229-45341269,chr19:45341229-45341269.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,,,1,NC_000019.10:45341241-45341264,-,
+rs10423015,chr19:45451767-45451807,chr19:45451767-45451807.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,,,1,NC_000019.10:45451778-45451801,+,
+rs10423015,chr19:45451767-45451807,chr19:45451767-45451807.1,TTTNTGTGGTTTGCACTTGT,TTTNTGTGGTTTGCACTTGT,GTA,24,2:1 | 3:23,,,2,NC_000019.10:45451769-45451792,+,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,,,1,NC_000021.9:26775853-26775876,-,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,,,2,NC_000021.9:26775852-26775875,-,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,,,3,NC_000021.9:26775851-26775874,-,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,,,1,NC_000021.9:26775853-26775876,-,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,,,2,NC_000021.9:26775852-26775875,-,
+rs2830489,chr21:26775851-26775891,chr21:26775851-26775891.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,,,3,NC_000021.9:26775851-26775874,-,

data/GuideScan2/GuideScan2_50bp_cpf1-.csv

@@ -0,0 +1,244 @@
+Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+chr1:156102400-156102450,chr1:156102400-156102450.0,TTTNAGTCCTGGTTCTGTCA,TTTNAGTCCTGGTTCTGTCA,CCT,70,2:2 | 3:68,N/A,N/A,1,NC_000001.11:156102405-156102428,+,
+chr1:161185576-161185626,chr1:161185576-161185626.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,N/A,N/A,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+chr10:59908033-59908083,chr10:59908033-59908083.0,TTTNACCAAGATGGCTGCTT,TTTNACCAAGATGGCTGCTT,TTA,11,2:0 | 3:11,N/A,N/A,1,NC_000010.11:59908034-59908057,+,
+chr10:59908033-59908083,chr10:59908033-59908083.1,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,N/A,N/A,2,NC_000010.11:59908052-59908075,+,
+chr10:59908033-59908083,chr10:59908033-59908083.2,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,N/A,N/A,3,NC_000010.11:59908053-59908076,+,
+chr10:59908033-59908083,chr10:59908033-59908083.3,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,N/A,N/A,4,NC_000010.11:59908047-59908070,-,
+chr10:119612790-119612840,chr10:119612790-119612840.0,TTTNCTGAACAGGTGGCGGG,TTTNCTGAACAGGTGGCGGG,CGC,0,2:0 | 3:0,N/A,N/A,1,NC_000010.11:119612799-119612822,+,
+chr11:47371726-47371776,chr11:47371726-47371776.0,TTTNCCTGCTCAGAACTCCC,TTTNCCTGCTCAGAACTCCC,CAG,14,2:3 | 3:11,N/A,N/A,1,NC_000011.10:47371752-47371775,+,
+chr11:47395606-47395656,chr11:47395606-47395656.0,TTNTTATAGCCATGAAATGC,GCATTTCATGGCTATAANAA,TCT,14,2:0 | 3:14,N/A,N/A,1,NC_000011.10:47395615-47395638,-,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:47395606-47395656,chr11:47395606-47395656.1,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,N/A,N/A,2,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:47395606-47395656,chr11:47395606-47395656.2,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,N/A,N/A,3,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+chr11:60184817-60184867,chr11:60184817-60184867.0,TTTNCAGAGTCTGAATTCTA,TTTNCAGAGTCTGAATTCTA,CCA,10,2:0 | 3:10,N/A,N/A,1,NC_000011.10:60184817-60184840,+,
+chr11:60202548-60202598,chr11:60202548-60202598.0,TTNGGTAATAGCTCTCAGTT,AACTGAGAGCTATTACCNAA,GGC,0,2:0 | 3:0,N/A,N/A,1,NC_000011.10:60202548-60202571,-,
+chr11:60202548-60202598,chr11:60202548-60202598.1,TTNGAAACTAGGACTGTTTT,AAAACAGTCCTAGTTTCNAA,CGG,1,2:0 | 3:1,N/A,N/A,2,NC_000011.10:60202572-60202595,-,
+chr11:60202548-60202598,chr11:60202548-60202598.2,TTNCGGTTTGGGTAATAGCT,AGCTATTACCCAAACCGNAA,CTC,2,2:0 | 3:2,N/A,N/A,3,NC_000011.10:60202555-60202578,-,
+chr11:60202548-60202598,chr11:60202548-60202598.3,TTNGGTTTGGGTAATAGCTC,GAGCTATTACCCAAACCNAA,TCA,4,2:0 | 3:4,N/A,N/A,4,NC_000011.10:60202554-60202577,-,
+chr11:60322880-60322930,chr11:60322880-60322930.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,N/A,N/A,1,NC_000011.10:60322902-60322925,-,
+chr11:60322880-60322930,chr11:60322880-60322930.1,TTNAAGCTACAATATAGTTT,AAACTATATTGTAGCTTNAA,CGG,5,2:0 | 3:5,N/A,N/A,2,NC_000011.10:60322903-60322926,-,
+chr11:60322880-60322930,chr11:60322880-60322930.2,TTNTTTTAAGCTACAATATA,TATATTGTAGCTTAAAANAA,GTT,64,2:1 | 3:63,N/A,N/A,3,NC_000011.10:60322907-60322930,-,
+chr11:86158669-86158719,chr11:86158669-86158719.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,N/A,N/A,1,NC_000011.10:86158687-86158710,-,
+chr11:86158669-86158719,chr11:86158669-86158719.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,N/A,N/A,2,NC_000011.10:86158686-86158709,-,
+chr11:86158669-86158719,chr11:86158669-86158719.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,N/A,N/A,3,NC_000011.10:86158688-86158711,-,
+chr11:86163254-86163304,chr11:86163254-86163304.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,N/A,N/A,1,NC_000011.10:86163269-86163292,+,
+chr11:86163254-86163304,chr11:86163254-86163304.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,N/A,N/A,2,NC_000011.10:86163270-86163293,+,
+chr11:86163254-86163304,chr11:86163254-86163304.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,N/A,N/A,3,NC_000011.10:86163264-86163287,+,
+chr11:133902917-133902967,chr11:133902917-133902967.0,TTNATATAAGCCATGGGAGG,CCTCCCATGGCTTATATNAA,GGC,1,2:0 | 3:1,N/A,N/A,1,NC_000011.10:133902925-133902948,-,immunoglobulin superfamily member 9B
+chr11:133902917-133902967,chr11:133902917-133902967.1,TTNCATATAAGCCATGGGAG,CTCCCATGGCTTATATGNAA,GGG,1,2:0 | 3:1,N/A,N/A,2,NC_000011.10:133902926-133902949,-,immunoglobulin superfamily member 9B
+chr11:133949496-133949546,chr11:133949496-133949546.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,N/A,N/A,1,NC_000011.10:133949507-133949530,-,
+chr11:133949496-133949546,chr11:133949496-133949546.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,N/A,N/A,2,NC_000011.10:133949502-133949525,-,
+chr12:39936285-39936335,chr12:39936285-39936335.0,TTNGAGGTACTTCTAGTTCA,TGAACTAGAAGTACCTCNAA,AGC,2,2:0 | 3:2,N/A,N/A,1,NC_000012.12:39936307-39936330,-,
+chr12:40259682-40259732,chr12:40259682-40259732.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,N/A,N/A,1,NC_000012.12:40259693-40259716,-,
+chr12:40259682-40259732,chr12:40259682-40259732.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,N/A,N/A,2,NC_000012.12:40259699-40259722,-,
+chr12:40259682-40259732,chr12:40259682-40259732.2,TTTNTGTCGACTAAATGTAA,TTTNTGTCGACTAAATGTAA,ATC,5,2:0 | 3:5,N/A,N/A,3,NC_000012.12:40259702-40259725,+,
+chr12:41036403-41036453,chr12:41036403-41036453.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,N/A,N/A,1,NC_000012.12:41036409-41036432,-,
+chr12:41195587-41195637,chr12:41195587-41195637.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,N/A,N/A,1,NC_000012.12:41195608-41195631,-,
+chr12:58262296-58262346,chr12:58262296-58262346.0,TTTNTCATGTAACTGTGTAG,TTTNTCATGTAACTGTGTAG,CAC,5,2:0 | 3:5,N/A,N/A,1,NC_000012.12:58262322-58262345,+,
+chr12:64455910-64455960,chr12:64455910-64455960.0,TTTNAGGCCAAGGAGCTACT,TTTNAGGCCAAGGAGCTACT,GCA,0,2:0 | 3:0,N/A,N/A,1,NC_000012.12:64455910-64455933,+,"TANK binding kinase 1, transcript variant X3"
+chr12:64455910-64455960,chr12:64455910-64455960.1,TTTNGGCCAAGGAGCTACTG,TTTNGGCCAAGGAGCTACTG,CAA,2,2:0 | 3:2,N/A,N/A,2,NC_000012.12:64455911-64455934,+,"TANK binding kinase 1, transcript variant X3"
+chr12:64455910-64455960,chr12:64455910-64455960.2,TTNCAGTAGCTCCTTGGCCT,AGGCCAAGGAGCTACTGNAA,AAA,2,2:0 | 3:2,N/A,N/A,3,NC_000012.12:64455911-64455934,-,"TANK binding kinase 1, transcript variant X3"
+chr14:92464075-92464125,chr14:92464075-92464125.0,TTTNAGAGACCAAATAGAGC,TTTNAGAGACCAAATAGAGC,ATC,5,2:0 | 3:5,N/A,N/A,1,NC_000014.9:92464095-92464118,+,
+chr14:92464075-92464125,chr14:92464075-92464125.1,TTTNAAGAGACCAAATAGAG,TTTNAAGAGACCAAATAGAG,CAT,8,2:0 | 3:8,N/A,N/A,2,NC_000014.9:92464094-92464117,+,
+chr14:92464075-92464125,chr14:92464075-92464125.2,TTTNGGCTATGAGTGGGTTT,TTTNGGCTATGAGTGGGTTT,TTT,9,2:0 | 3:9,N/A,N/A,3,NC_000014.9:92464075-92464098,+,
+chr14:92464075-92464125,chr14:92464075-92464125.3,TTTNTAAGAGACCAAATAGA,TTTNTAAGAGACCAAATAGA,GCA,10,2:0 | 3:10,N/A,N/A,4,NC_000014.9:92464093-92464116,+,
+chr14:92464075-92464125,chr14:92464075-92464125.4,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,N/A,N/A,5,NC_000014.9:92464085-92464108,-,
+chr14:92464075-92464125,chr14:92464075-92464125.5,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,N/A,N/A,6,NC_000014.9:92464092-92464115,+,
+chr15:50529035-50529085,chr15:50529035-50529085.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,N/A,N/A,1,NC_000015.10:50529047-50529070,-,
+chr15:50529035-50529085,chr15:50529035-50529085.1,TTTNCTTCAGGAAATCTTTA,TTTNCTTCAGGAAATCTTTA,TTG,124,2:4 | 3:120,N/A,N/A,2,NC_000015.10:50529057-50529080,+,
+chr15:63277677-63277727,chr15:63277677-63277727.0,TTTNTGTCTTCACCATCGCC,TTTNTGTCTTCACCATCGCC,ACC,1,2:0 | 3:1,N/A,N/A,1,NC_000015.10:63277681-63277704,+,"aph-1 homolog B, gamma-secretase subunit, transcript variant X1"
+chr17:781774-781824,chr17:781774-781824.0,TTNATGTAGATAAAATCAGC,GCTGATTTTATCTACATNAA,GTA,5,2:0 | 3:5,N/A,N/A,1,NC_000017.11:781779-781802,-,
+chr17:915240-915290,chr17:915240-915290.0,TTTNTAGTTGAGAATAAGTG,TTTNTAGTTGAGAATAAGTG,GGA,8,2:0 | 3:8,N/A,N/A,1,NC_000017.11:915243-915266,+,
+chr17:915240-915290,chr17:915240-915290.1,TTTNATAGTTGAGAATAAGT,TTTNATAGTTGAGAATAAGT,GGG,11,2:1 | 3:10,N/A,N/A,2,NC_000017.11:915242-915265,+,
+chr19:44516772-44516822,chr19:44516772-44516822.0,TTTNCCTGACCACTAGGGGT,TTTNCCTGACCACTAGGGGT,TGG,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:44516776-44516799,+,
+chr19:44575179-44575229,chr19:44575179-44575229.0,TTTNAGCAATAGGCGCTAAT,TTTNAGCAATAGGCGCTAAT,ATT,6,2:0 | 3:6,N/A,N/A,1,NC_000019.10:44575186-44575209,+,
+chr19:44663658-44663708,chr19:44663658-44663708.0,TTNGCGTCTTGCTTCCATGC,GCATGGAAGCAAGACGCNAA,CTC,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44663666-44663689,-,"PVR cell adhesion molecule, transcript variant 1"
+chr19:44731916-44731966,chr19:44731916-44731966.0,TTTNCAAGTGAAACAGAGGG,TTTNCAAGTGAAACAGAGGG,GCT,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44731918-44731941,+,
+chr19:44731916-44731966,chr19:44731916-44731966.1,TTTNTGAGCTTTTAGAGGGG,TTTNTGAGCTTTTAGAGGGG,AAC,7,2:0 | 3:7,N/A,N/A,2,NC_000019.10:44731940-44731963,+,
+chr19:44732663-44732713,chr19:44732663-44732713.0,TTNCACAGGATGGAACCTGA,TCAGGTTCCATCCTGTGNAA,GGA,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:44732681-44732704,-,
+chr19:44737966-44738015,chr19:44737966-44738015.0,TTNCCTGGAAGTCGGTGCCT,AGGCACCGACTTCCAGGNAA,CCC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44737974-44737997,-,
+chr19:44737966-44738015,chr19:44737966-44738015.1,TTNCCCTGGAAGTCGGTGCC,GGCACCGACTTCCAGGGNAA,TCC,2,2:0 | 3:2,N/A,N/A,2,NC_000019.10:44737975-44737998,-,
+chr19:44751983-44752033,chr19:44751983-44752033.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,N/A,N/A,1,NC_000019.10:44752005-44752028,-,
+chr19:44751983-44752033,chr19:44751983-44752033.1,TTNACATGTATAATTCATAT,ATATGAATTATACATGTNAA,AGT,55,2:0 | 3:55,N/A,N/A,2,NC_000019.10:44751983-44752006,-,
+chr19:44798144-44798193,chr19:44798144-44798193.0,TTTNATGGGGAAAATGGGGA,TTTNATGGGGAAAATGGGGA,CCA,15,2:0 | 3:15,N/A,N/A,1,NC_000019.10:44798144-44798167,+,
+chr19:44839532-44839582,chr19:44839532-44839582.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,N/A,N/A,1,NC_000019.10:44839548-44839571,-,
+chr19:44849136-44849186,chr19:44849136-44849186.0,TTTNGGAATGGGGTCAGAGA,TTTNGGAATGGGGTCAGAGA,CAC,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:44849136-44849159,+,
+chr19:44867658-44867708,chr19:44867658-44867708.0,TTNCATTCCTGGAACGCGCC,GGCGCGTTCCAGGAATGNAA,CAG,3,2:0 | 3:3,N/A,N/A,1,NC_000019.10:44867676-44867699,-,
+chr19:44874861-44874911,chr19:44874861-44874911.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44874872-44874895,-,
+chr19:44874861-44874911,chr19:44874861-44874911.1,TTNCTCTTTGGCTCCGTGCC,GGCACGGAGCCAAAGAGNAA,TTG,1,2:0 | 3:1,N/A,N/A,2,NC_000019.10:44874879-44874902,-,
+chr19:44874861-44874911,chr19:44874861-44874911.2,TTNCCTCTTTGGCTCCGTGC,GCACGGAGCCAAAGAGGNAA,CTT,11,2:0 | 3:11,N/A,N/A,3,NC_000019.10:44874880-44874903,-,
+chr19:44874861-44874911,chr19:44874861-44874911.3,TTNTGCTTTTCCTCTTTGGC,GCCAAAGAGGAAAAGCANAA,TCC,54,2:9 | 3:45,N/A,N/A,4,NC_000019.10:44874887-44874910,-,
+chr19:44876463-44876513,chr19:44876463-44876513.0,TTNTGCAGGCATTATCTGAA,TTCAGATAATGCCTGCANAA,GGC,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44876482-44876505,-,
+chr19:44877687-44877737,chr19:44877687-44877737.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,N/A,N/A,1,NC_000019.10:44877704-44877727,+,
+chr19:44890928-44890978,chr19:44890928-44890978.0,TTNGCCACGCCCGCTGAGGC,GCCTCAGCGGGCGTGGCNAA,ATC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:44890948-44890971,-,
+chr19:44890928-44890978,chr19:44890928-44890978.1,TTNCCACGCCCGCTGAGGCA,TGCCTCAGCGGGCGTGGNAA,TCG,2,2:0 | 3:2,N/A,N/A,2,NC_000019.10:44890947-44890970,-,
+chr19:44910293-44910343,chr19:44910293-44910343.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,N/A,N/A,1,NC_000019.10:44910300-44910323,+,
+chr19:44924365-44924415,chr19:44924365-44924415.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:44924380-44924403,-,
+chr19:44924365-44924415,chr19:44924365-44924415.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,N/A,N/A,2,NC_000019.10:44924381-44924404,-,
+chr19:44924365-44924415,chr19:44924365-44924415.2,TTNCCCATTTTAGGGACATG,CATGTCCCTAAAATGGGNAA,AGT,8,2:0 | 3:8,N/A,N/A,3,NC_000019.10:44924389-44924412,-,
+chr19:44955180-44955230,chr19:44955180-44955230.0,TTNTCCCAGCCCGTTTGTTT,AAACAAACGGGCTGGGANAA,CCA,7,2:0 | 3:7,N/A,N/A,1,NC_000019.10:44955183-44955206,-,
+chr19:44956568-44956618,chr19:44956568-44956618.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,N/A,N/A,1,NC_000019.10:44956576-44956599,-,
+chr19:44965846-44965896,chr19:44965846-44965896.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:44965851-44965874,+,
+chr19:45009952-45010002,chr19:45009952-45010002.0,TTTNAACGAAGTCATGCTCC,TTTNAACGAAGTCATGCTCC,TAA,3,2:0 | 3:3,N/A,N/A,1,NC_000019.10:45009953-45009976,+,
+chr19:45019448-45019498,chr19:45019448-45019498.0,TTNCTAGAGGTGATTAATGA,TCATTAATCACCTCTAGNAA,GAT,26,2:0 | 3:26,N/A,N/A,1,NC_000019.10:45019475-45019498,-,
+chr19:45040471-45040521,chr19:45040471-45040521.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,N/A,N/A,1,NC_000019.10:45040485-45040508,+,
+chr19:45045851-45045901,chr19:45045851-45045901.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,N/A,N/A,1,NC_000019.10:45045858-45045881,+,
+chr19:45131570-45131620,chr19:45131570-45131620.0,TTNCATGCACAATTTCACTT,AAGTGAAATTGTGCATGNAA,GGC,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:45131572-45131595,-,
+chr19:45146554-45146604,chr19:45146554-45146604.0,TTTNTCCGGTCGGTCTGCGA,TTTNTCCGGTCGGTCTGCGA,TGA,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45146575-45146598,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146554-45146604,chr19:45146554-45146604.1,TTTNCCGGTCGGTCTGCGAT,TTTNCCGGTCGGTCTGCGAT,GAG,0,2:0 | 3:0,N/A,N/A,2,NC_000019.10:45146576-45146599,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45146554-45146604,chr19:45146554-45146604.2,TTTNCGGTCGGTCTGCGATG,TTTNCGGTCGGTCTGCGATG,AGC,0,2:0 | 3:0,N/A,N/A,3,NC_000019.10:45146577-45146600,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+chr19:45148795-45148845,chr19:45148795-45148845.0,TTTNTTACTGTTGGGGGTTG,TTTNTTACTGTTGGGGGTTG,AAT,34,2:1 | 3:33,N/A,N/A,1,NC_000019.10:45148816-45148839,+,
+chr19:45187765-45187815,chr19:45187765-45187815.0,TTNTATTAGGGTCTGGGGCA,TGCCCCAGACCCTAATANAA,TCA,11,2:0 | 3:11,N/A,N/A,1,NC_000019.10:45187790-45187813,-,
+chr19:45187765-45187815,chr19:45187765-45187815.1,TTNGTATTAGGGTCTGGGGC,GCCCCAGACCCTAATACNAA,ATC,11,2:0 | 3:11,N/A,N/A,2,NC_000019.10:45187791-45187814,-,
+chr19:45193736-45193786,chr19:45193736-45193786.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,N/A,N/A,1,NC_000019.10:45193747-45193770,+,
+chr19:45193736-45193786,chr19:45193736-45193786.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,N/A,N/A,2,NC_000019.10:45193748-45193771,+,
+chr19:45195903-45195953,chr19:45195903-45195953.0,TTNATTCTGATTAGAATGCT,AGCATTCTAATCAGAATNAA,CTC,19,2:0 | 3:19,N/A,N/A,1,NC_000019.10:45195922-45195945,-,
+chr19:45195903-45195953,chr19:45195903-45195953.1,TTNCATTCTGATTAGAATGC,GCATTCTAATCAGAATGNAA,TCT,33,2:3 | 3:30,N/A,N/A,2,NC_000019.10:45195923-45195946,-,
+chr19:45212908-45212958,chr19:45212908-45212958.0,TTNACCCAACCCCAAACTCC,GGAGTTTGGGGTTGGGTNAA,CTG,6,2:1 | 3:5,N/A,N/A,1,NC_000019.10:45212916-45212939,-,exocyst complex component 3 like 2
+chr19:45212908-45212958,chr19:45212908-45212958.1,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,N/A,N/A,2,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+chr19:45212908-45212958,chr19:45212908-45212958.2,TTNCACCCAACCCCAAACTC,GAGTTTGGGGTTGGGTGNAA,CCT,7,2:0 | 3:7,N/A,N/A,3,NC_000019.10:45212917-45212940,-,exocyst complex component 3 like 2
+chr19:45266465-45266515,chr19:45266465-45266515.0,TTNTTCACTCCTCCTGTCCC,GGGACAGGAGGAGTGAANAA,CTC,35,2:1 | 3:34,N/A,N/A,1,NC_000019.10:45266492-45266515,-,
+chr19:45303269-45303319,chr19:45303269-45303319.0,TTTNTAAGTTATTACACCCC,TTTNTAAGTTATTACACCCC,GAC,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45303278-45303301,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45303269-45303319,chr19:45303269-45303319.1,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,N/A,N/A,2,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45303269-45303319,chr19:45303269-45303319.2,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,N/A,N/A,3,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+chr19:45332920-45332970,chr19:45332920-45332970.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,N/A,N/A,1,NC_000019.10:45332932-45332955,-,
+chr19:45341224-45341274,chr19:45341224-45341274.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,N/A,N/A,1,NC_000019.10:45341241-45341264,-,
+chr19:45451762-45451812,chr19:45451762-45451812.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,N/A,N/A,1,NC_000019.10:45451778-45451801,+,
+chr19:45451762-45451812,chr19:45451762-45451812.1,TTTNTGTGGTTTGCACTTGT,TTTNTGTGGTTTGCACTTGT,GTA,24,2:1 | 3:23,N/A,N/A,2,NC_000019.10:45451769-45451792,+,
+chr2:127054654-127054704,chr2:127054654-127054704.0,TTNAACCCAAGTGCCCCGGG,CCCGGGGCACTTGGGTTNAA,TGG,1,2:0 | 3:1,N/A,N/A,1,NC_000002.12:127054673-127054696,-,
+chr2:127054654-127054704,chr2:127054654-127054704.1,TTNACCCAAGTGCCCCGGGT,ACCCGGGGCACTTGGGTNAA,GGT,2,2:0 | 3:2,N/A,N/A,2,NC_000002.12:127054672-127054695,-,
+chr2:127068931-127068981,chr2:127068931-127068981.0,TTTNGGCAGTTTGAAGGGAC,TTTNGGCAGTTTGAAGGGAC,TCG,0,2:0 | 3:0,N/A,N/A,1,NC_000002.12:127068949-127068972,+,"bridging integrator 1, transcript variant 15"
+chr2:127068931-127068981,chr2:127068931-127068981.1,TTTNGCAGTTTGAAGGGACT,TTTNGCAGTTTGAAGGGACT,CGT,0,2:0 | 3:0,N/A,N/A,2,NC_000002.12:127068950-127068973,+,"bridging integrator 1, transcript variant 15"
+chr2:127068931-127068981,chr2:127068931-127068981.2,TTTNAAGGGACTCGTAGTGG,TTTNAAGGGACTCGTAGTGG,TGC,0,2:0 | 3:0,N/A,N/A,3,NC_000002.12:127068958-127068981,+,"bridging integrator 1, transcript variant 15"
+chr2:127068931-127068981,chr2:127068931-127068981.3,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,N/A,N/A,4,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+chr2:127068931-127068981,chr2:127068931-127068981.4,TTTNGGCTTCATCCTTCTTT,TTTNGGCTTCATCCTTCTTT,TTG,13,2:0 | 3:13,N/A,N/A,5,NC_000002.12:127068931-127068954,+,"bridging integrator 1, transcript variant 15"
+chr2:127068931-127068981,chr2:127068931-127068981.5,TTTNGCTTCATCCTTCTTTT,TTTNGCTTCATCCTTCTTTT,TGG,25,2:0 | 3:25,N/A,N/A,6,NC_000002.12:127068932-127068955,+,"bridging integrator 1, transcript variant 15"
+chr2:127084560-127084610,chr2:127084560-127084610.0,TTTNAGCGTTCCCTCATGCT,TTTNAGCGTTCCCTCATGCT,CAG,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127084581-127084604,+,
+chr2:127104164-127104214,chr2:127104164-127104214.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,N/A,N/A,1,NC_000002.12:127104176-127104199,-,
+chr2:127104164-127104214,chr2:127104164-127104214.1,TTNGAACAAGGGATTTGGGC,GCCCAAATCCCTTGTTCNAA,CTG,3,2:0 | 3:3,N/A,N/A,2,NC_000002.12:127104190-127104213,-,
+chr2:127104164-127104214,chr2:127104164-127104214.2,TTNAACAAGGGATTTGGGCC,GGCCCAAATCCCTTGTTNAA,TGA,5,2:0 | 3:5,N/A,N/A,3,NC_000002.12:127104189-127104212,-,
+chr2:127104164-127104214,chr2:127104164-127104214.3,TTNTGAACAAGGGATTTGGG,CCCAAATCCCTTGTTCANAA,CCT,5,2:0 | 3:5,N/A,N/A,4,NC_000002.12:127104191-127104214,-,
+chr2:127115966-127116016,chr2:127115966-127116016.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,N/A,N/A,1,NC_000002.12:127115976-127115999,+,
+chr2:127133331-127133381,chr2:127133331-127133381.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,N/A,N/A,1,NC_000002.12:127133344-127133367,-,
+chr2:134707020-134707070,chr2:134707020-134707070.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,N/A,N/A,1,NC_000002.12:134707033-134707056,+,
+chr21:26775846-26775896,chr21:26775846-26775896.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,N/A,N/A,1,NC_000021.9:26775853-26775876,-,
+chr21:26775846-26775896,chr21:26775846-26775896.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,N/A,N/A,2,NC_000021.9:26775852-26775875,-,
+chr21:26775846-26775896,chr21:26775846-26775896.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,N/A,N/A,3,NC_000021.9:26775851-26775874,-,
+chr4:945299-945349,chr4:945299-945349.0,TTTNTTGCTGCCTCAGCTTC,TTTNTTGCTGCCTCAGCTTC,TGT,24,2:0 | 3:24,N/A,N/A,1,NC_000004.12:945325-945348,+,
+chr4:982784-982834,chr4:982784-982834.0,TTNAGTGAGGTGTGGGGAGA,TCTCCCCACACCTCACTNAA,CAC,7,2:0 | 3:7,N/A,N/A,1,NC_000004.12:982785-982808,-,
+chr4:982784-982834,chr4:982784-982834.1,TTNTTTCAGTGAGGTGTGGG,CCCACACCTCACTGAAANAA,GAG,17,2:1 | 3:16,N/A,N/A,2,NC_000004.12:982789-982812,-,
+chr4:89631743-89631793,chr4:89631743-89631793.0,TTTNAAACTACATAAAACCT,TTTNAAACTACATAAAACCT,TGA,21,2:0 | 3:21,N/A,N/A,1,NC_000004.12:89631743-89631766,+,
+chr4:89657334-89657384,chr4:89657334-89657384.0,TTNATTGTTCACTGAATCTT,AAGATTCAGTGAACAATNAA,AAA,28,2:0 | 3:28,N/A,N/A,1,NC_000004.12:89657343-89657366,-,
+chr4:89657334-89657384,chr4:89657334-89657384.1,TTTNAGATTCAGTGAACAAT,TTTNAGATTCAGTGAACAAT,GAA,29,2:1 | 3:28,N/A,N/A,2,NC_000004.12:89657343-89657366,+,
+chr4:89689150-89689200,chr4:89689150-89689200.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,N/A,N/A,1,NC_000004.12:89689164-89689187,-,
+chr4:89775980-89776030,chr4:89775980-89776030.0,TTTNTGGCCAGCACCTCAGT,TTTNTGGCCAGCACCTCAGT,ACC,3,2:0 | 3:3,N/A,N/A,1,NC_000004.12:89775980-89776003,+,
+chr4:89781604-89781654,chr4:89781604-89781654.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,N/A,N/A,1,NC_000004.12:89781620-89781643,-,
+chr4:89860478-89860528,chr4:89860478-89860528.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,N/A,N/A,1,NC_000004.12:89860499-89860522,-,
+chr6:32613937-32613987,chr6:32613937-32613987.0,TTTNCATTGTTGGAAAAAAA,TTTNCATTGTTGGAAAAAAA,ATA,116,2:6 | 3:110,N/A,N/A,1,NC_000006.12:32613942-32613965,+,
+chr6:40783111-40783161,chr6:40783111-40783161.0,TTNAGCTGAGCACAGAGGGC,GCCCTCTGTGCTCAGCTNAA,TGA,9,2:1 | 3:8,N/A,N/A,1,NC_000006.12:40783115-40783138,-,
+chr6:47416128-47416178,chr6:47416128-47416178.0,TTTNTTAGTCTTCAATTCCT,TTTNTTAGTCTTCAATTCCT,TGC,26,2:0 | 3:26,N/A,N/A,1,NC_000006.12:47416154-47416177,+,
+chr6:3727643-3727693,chr6:3727643-3727693.0,TTNAGAAATCATGAGGTCCA,TGGACCTCATGATTTCTNAA,ATG,10,2:0 | 3:10,N/A,N/A,1,NC_000006.12:3727644-3727667,-,"PX domain containing 1, transcript variant X1"
+chr6:3727643-3727693,chr6:3727643-3727693.1,TTNCAGAAATCATGAGGTCC,GGACCTCATGATTTCTGNAA,AAT,10,2:0 | 3:10,N/A,N/A,2,NC_000006.12:3727645-3727668,-,"PX domain containing 1, transcript variant X1"
+chr6:3727643-3727693,chr6:3727643-3727693.2,TTNGTTTTCAGAAATCATGA,TCATGATTTCTGAAAACNAA,GGT,15,2:0 | 3:15,N/A,N/A,3,NC_000006.12:3727650-3727673,-,"PX domain containing 1, transcript variant X1"
+chr6:3793243-3793293,chr6:3793243-3793293.0,TTTNGCAGCAACAATCATGT,TTTNGCAGCAACAATCATGT,CTT,12,2:0 | 3:12,N/A,N/A,1,NC_000006.12:3793243-3793266,+,
+chr6:3793243-3793293,chr6:3793243-3793293.1,TTTNCAGCAACAATCATGTC,TTTNCAGCAACAATCATGTC,TTC,15,2:1 | 3:14,N/A,N/A,2,NC_000006.12:3793244-3793267,+,
+chr6:3833504-3833554,chr6:3833504-3833554.0,TTTNGATGGCTATCACCTTT,TTTNGATGGCTATCACCTTT,CCC,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3833507-3833530,+,
+chr6:3833504-3833554,chr6:3833504-3833554.1,TTTNCCCAGTGCATCCTGTG,TTTNCCCAGTGCATCCTGTG,TTT,29,2:1 | 3:28,N/A,N/A,2,NC_000006.12:3833524-3833547,+,
+chr6:3844076-3844126,chr6:3844076-3844126.0,TTTNCGGGGGTCTGTTATTG,TTTNCGGGGGTCTGTTATTG,TTG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3844095-3844118,+,
+chr6:4032330-4032380,chr6:4032330-4032380.0,TTNTAATTGGGGATTTTTTC,GAAAAAATCCCCAATTANAA,CTA,31,2:1 | 3:30,N/A,N/A,1,NC_000006.12:4032335-4032358,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:4032330-4032380,chr6:4032330-4032380.1,TTNATTTATAATTGGGGATT,AATCCCCAATTATAAATNAA,TTT,78,2:3 | 3:75,N/A,N/A,2,NC_000006.12:4032340-4032363,-,"pre-mRNA processing factor 4B, transcript variant 4"
+chr6:4034568-4034618,chr6:4034568-4034618.0,TTTNTTACCAGGATACCATA,TTTNTTACCAGGATACCATA,TAG,7,2:0 | 3:7,N/A,N/A,1,NC_000006.12:4034575-4034598,+,
+chr6:4095256-4095306,chr6:4095256-4095306.0,TTNGTTGAGCCTGTAACACC,GGTGTTACAGGCTCAACNAA,TTG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:4095277-4095300,-,
+chr6:4095256-4095306,chr6:4095256-4095306.1,TTNTTGAGCCTGTAACACCT,AGGTGTTACAGGCTCAANAA,TGA,2,2:0 | 3:2,N/A,N/A,2,NC_000006.12:4095276-4095299,-,
+chr6:4095256-4095306,chr6:4095256-4095306.2,TTTNAAGGTGTTACAGGCTC,TTTNAAGGTGTTACAGGCTC,AAC,3,2:0 | 3:3,N/A,N/A,3,NC_000006.12:4095274-4095297,+,
+chr6:4126760-4126810,chr6:4126760-4126810.0,TTNAGTGGCTCTTAGAATAA,TTATTCTAAGAGCCACTNAA,AGA,33,2:1 | 3:32,N/A,N/A,1,NC_000006.12:4126765-4126788,-,
+chr6:3613379-3613429,chr6:3613379-3613429.0,TTTNGTCCAATTACTTCGTT,TTTNGTCCAATTACTTCGTT,GTA,2,2:0 | 3:2,N/A,N/A,1,NC_000006.12:3613384-3613407,+,
+chr6:3647076-3647126,chr6:3647076-3647126.0,TTNTGGGCTCTCTTCATGGG,CCCATGAAGAGAGCCCANAA,CAC,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3647098-3647121,-,
+chr6:3647076-3647126,chr6:3647076-3647126.1,TTNGTGGGCTCTCTTCATGG,CCATGAAGAGAGCCCACNAA,GCA,1,2:0 | 3:1,N/A,N/A,2,NC_000006.12:3647099-3647122,-,
+chr6:3657951-3658001,chr6:3657951-3658001.0,TTTNTACAAGGAGGCAGTGA,TTTNTACAAGGAGGCAGTGA,CTC,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:3657965-3657988,+,
+chr6:3701290-3701340,chr6:3701290-3701340.0,TTNAGCCTGAGTCTGACTCC,GGAGTCAGACTCAGGCTNAA,GAT,22,2:0 | 3:22,N/A,N/A,1,NC_000006.12:3701296-3701319,-,
+chr6:3846635-3846685,chr6:3846635-3846685.0,TTNGGAGGAGGTAAAATATC,GATATTTTACCTCCTCCNAA,AAC,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:3846657-3846680,-,
+chr6:3846635-3846685,chr6:3846635-3846685.1,TTNGGGAGGAGGTAAAATAT,ATATTTTACCTCCTCCCNAA,CAA,12,2:0 | 3:12,N/A,N/A,2,NC_000006.12:3846658-3846681,-,
+chr6:3846635-3846685,chr6:3846635-3846685.2,TTNTGGGAGGAGGTAAAATA,TATTTTACCTCCTCCCANAA,TCA,17,2:0 | 3:17,N/A,N/A,3,NC_000006.12:3846659-3846682,-,
+chr6:3852300-3852350,chr6:3852300-3852350.0,TTTNAACTTCCCAATTCAAA,TTTNAACTTCCCAATTCAAA,GGT,7,2:1 | 3:6,N/A,N/A,1,NC_000006.12:3852315-3852338,+,
+chr6:3852300-3852350,chr6:3852300-3852350.1,TTNAATTGGGAAGTTTAAAA,TTTTAAACTTCCCAATTNAA,GCT,22,2:1 | 3:21,N/A,N/A,2,NC_000006.12:3852311-3852334,-,
+chr6:3852300-3852350,chr6:3852300-3852350.2,TTTNAAACTTCCCAATTCAA,TTTNAAACTTCCCAATTCAA,AGG,23,2:1 | 3:22,N/A,N/A,3,NC_000006.12:3852314-3852337,+,
+chr6:3711016-3711066,chr6:3711016-3711066.0,TTNTGGAACAATCCATATTA,TAATATGGATTGTTCCANAA,GAG,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3711029-3711052,-,
+chr6:3711016-3711066,chr6:3711016-3711066.1,TTNGGAACAATCCATATTAG,CTAATATGGATTGTTCCNAA,AGA,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3711028-3711051,-,
+chr6:3711016-3711066,chr6:3711016-3711066.2,TTNGAACAATCCATATTAGA,TCTAATATGGATTGTTCNAA,GAT,9,2:1 | 3:8,N/A,N/A,3,NC_000006.12:3711027-3711050,-,
+chr6:3711016-3711066,chr6:3711016-3711066.3,TTTNTAGATCAATCTCTAAT,TTTNTAGATCAATCTCTAAT,ATG,12,2:0 | 3:12,N/A,N/A,4,NC_000006.12:3711016-3711039,+,
+chr6:3721885-3721935,chr6:3721885-3721935.0,TTNCTGTTACTAGTCCGTGC,GCACGGACTAGTAACAGNAA,GCA,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3721896-3721919,-,
+chr6:3721885-3721935,chr6:3721885-3721935.1,TTNACTGTTACTAGTCCGTG,CACGGACTAGTAACAGTNAA,CGC,0,2:0 | 3:0,N/A,N/A,2,NC_000006.12:3721897-3721920,-,
+chr6:3765253-3765303,chr6:3765253-3765303.0,TTNTTTCAGACAGAAGGGTG,CACCCTTCTGTCTGAAANAA,ACG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3765259-3765282,-,
+chr6:3765253-3765303,chr6:3765253-3765303.1,TTNAGACAGAAGGGTGACGT,ACGTCACCCTTCTGTCTNAA,GGG,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3765255-3765278,-,
+chr6:4021033-4021083,chr6:4021033-4021083.0,TTTNACCTAACTTCTAATCT,TTTNACCTAACTTCTAATCT,CCA,9,2:0 | 3:9,N/A,N/A,1,NC_000006.12:4021037-4021060,+,
+chr6:4021033-4021083,chr6:4021033-4021083.1,TTTNCACCTAACTTCTAATC,TTTNCACCTAACTTCTAATC,TCC,11,2:0 | 3:11,N/A,N/A,2,NC_000006.12:4021036-4021059,+,
+chr6:4029651-4029701,chr6:4029651-4029701.0,TTNCTGAGAAAGGACAGGGA,TCCCTGTCCTTTCTCAGNAA,TTA,14,2:0 | 3:14,N/A,N/A,1,NC_000006.12:4029666-4029689,-,
+chr6:4029651-4029701,chr6:4029651-4029701.1,TTTNTCAGTAAACGTTTCTT,TTTNTCAGTAAACGTTTCTT,CTT,27,2:2 | 3:25,N/A,N/A,2,NC_000006.12:4029678-4029701,+,
+chr6:3737162-3737212,chr6:3737162-3737212.0,TTNTCCCCAGTATTCTAGAT,ATCTAGAATACTGGGGANAA,CGG,0,2:0 | 3:0,N/A,N/A,1,NC_000006.12:3737183-3737206,-,"PX domain containing 1, transcript variant X1"
+chr6:3747754-3747804,chr6:3747754-3747804.0,TTTNTCTTGTTACTATTGGA,TTTNTCTTGTTACTATTGGA,TTT,32,2:0 | 3:32,N/A,N/A,1,NC_000006.12:3747767-3747790,+,
+chr6:3747754-3747804,chr6:3747754-3747804.1,TTTNTTACTTGTTTATCTTG,TTTNTTACTTGTTTATCTTG,TTA,61,2:2 | 3:59,N/A,N/A,2,NC_000006.12:3747756-3747779,+,
+chr6:3595314-3595364,chr6:3595314-3595364.0,TTNTATCCTGGCTTGTGGCC,GGCCACAAGCCAGGATANAA,GGG,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3595331-3595354,-,
+chr6:3629044-3629094,chr6:3629044-3629094.0,TTTNCAAGCACCAGCAGCAG,TTTNCAAGCACCAGCAGCAG,ACA,7,2:0 | 3:7,N/A,N/A,1,NC_000006.12:3629062-3629085,+,
+chr6:3684089-3684139,chr6:3684089-3684139.0,TTTNAAGGCTTCTTTGAGTT,TTTNAAGGCTTCTTTGAGTT,GCC,9,2:0 | 3:9,N/A,N/A,1,NC_000006.12:3684111-3684134,+,
+chr6:3684089-3684139,chr6:3684089-3684139.1,TTTNAAAGGCTTCTTTGAGT,TTTNAAAGGCTTCTTTGAGT,TGC,10,2:0 | 3:10,N/A,N/A,2,NC_000006.12:3684110-3684133,+,
+chr6:3684089-3684139,chr6:3684089-3684139.2,TTTNTAAAGGCTTCTTTGAG,TTTNTAAAGGCTTCTTTGAG,TTG,16,2:0 | 3:16,N/A,N/A,3,NC_000006.12:3684109-3684132,+,
+chr6:3684089-3684139,chr6:3684089-3684139.3,TTNAAAATCACAGCCAAGAA,TTCTTGGCTGTGATTTTNAA,GCT,18,2:0 | 3:18,N/A,N/A,4,NC_000006.12:3684093-3684116,-,
+chr6:3807611-3807661,chr6:3807611-3807661.0,TTTNGGCTTCATAGTACCTT,TTTNGGCTTCATAGTACCTT,GGC,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3807631-3807654,+,
+chr6:3807611-3807661,chr6:3807611-3807661.1,TTTNGGGCTTCATAGTACCT,TTTNGGGCTTCATAGTACCT,TGG,3,2:0 | 3:3,N/A,N/A,2,NC_000006.12:3807630-3807653,+,
+chr6:3807611-3807661,chr6:3807611-3807661.2,TTTNAATAGCGGTGTTTTGG,TTTNAATAGCGGTGTTTTGG,GCT,6,2:0 | 3:6,N/A,N/A,3,NC_000006.12:3807616-3807639,+,
+chr6:3807611-3807661,chr6:3807611-3807661.3,TTTNATAGCGGTGTTTTGGG,TTTNATAGCGGTGTTTTGGG,CTT,7,2:0 | 3:7,N/A,N/A,4,NC_000006.12:3807617-3807640,+,
+chr6:3816251-3816301,chr6:3816251-3816301.0,TTTNTAATATGTCACAGTTT,TTTNTAATATGTCACAGTTT,TGA,48,2:1 | 3:47,N/A,N/A,1,NC_000006.12:3816268-3816291,+,
+chr6:3876220-3876270,chr6:3876220-3876270.0,TTNGCCCTGAAGAGCCAAGA,TCTTGGCTCTTCAGGGCNAA,TGT,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:3876231-3876254,-,
+chr6:3908584-3908634,chr6:3908584-3908634.0,TTTNGGCTGACCCCTCAGGA,TTTNGGCTGACCCCTCAGGA,TGT,1,2:0 | 3:1,N/A,N/A,1,NC_000006.12:3908584-3908607,+,uncharacterized LOC107986558
+chr6:3711334-3711384,chr6:3711334-3711384.0,TTTNTTAATGCATAACTATA,TTTNTTAATGCATAACTATA,AGC,5,2:0 | 3:5,N/A,N/A,1,NC_000006.12:3711337-3711360,+,
+chr6:3721926-3721976,chr6:3721926-3721976.0,TTNGCTCCCCAACCTCATCC,GGATGAGGTTGGGGAGCNAA,CCT,5,2:0 | 3:5,N/A,N/A,1,NC_000006.12:3721942-3721965,-,
+chr6:4010348-4010398,chr6:4010348-4010398.0,TTNCTACATTAAAGCTTAGG,CCTAAGCTTTAATGTAGNAA,GTT,11,2:0 | 3:11,N/A,N/A,1,NC_000006.12:4010375-4010398,-,
+chr6:4010348-4010398,chr6:4010348-4010398.1,TTNGATATTTCTACTGCCTG,CAGGCAGTAGAAATATCNAA,GAT,13,2:0 | 3:13,N/A,N/A,2,NC_000006.12:4010352-4010375,-,
+chr6:4010348-4010398,chr6:4010348-4010398.2,TTNTGATATTTCTACTGCCT,AGGCAGTAGAAATATCANAA,GGA,18,2:1 | 3:17,N/A,N/A,3,NC_000006.12:4010353-4010376,-,
+chr6:4010348-4010398,chr6:4010348-4010398.3,TTNATATTTCTACTGCCTGG,CCAGGCAGTAGAAATATNAA,ATT,29,2:4 | 3:25,N/A,N/A,4,NC_000006.12:4010351-4010374,-,
+chr6:4016004-4016054,chr6:4016004-4016054.0,TTTNAGTCTCTATCTTGGTA,TTTNAGTCTCTATCTTGGTA,AGT,13,2:0 | 3:13,N/A,N/A,1,NC_000006.12:4016005-4016028,+,
+chr6:4018960-4019010,chr6:4018960-4019010.0,TTTNATTGTAACTCCCCCTG,TTTNATTGTAACTCCCCCTG,CCG,6,2:0 | 3:6,N/A,N/A,1,NC_000006.12:4018980-4019003,+,
+chr6:4018960-4019010,chr6:4018960-4019010.1,TTTNCTTTAATTGTAACTCC,TTTNCTTTAATTGTAACTCC,CCC,7,2:0 | 3:7,N/A,N/A,2,NC_000006.12:4018975-4018998,+,
+chr6:4081890-4081940,chr6:4081890-4081940.0,TTNAGTTCTGAAATAACAGA,TCTGTTATTTCAGAACTNAA,AAA,58,2:9 | 3:49,N/A,N/A,1,NC_000006.12:4081892-4081915,-,
+chr6:4113598-4113648,chr6:4113598-4113648.0,TTTNCTAAACAGTCTCACTG,TTTNCTAAACAGTCTCACTG,CAG,8,2:0 | 3:8,N/A,N/A,1,NC_000006.12:4113613-4113636,+,
+chr6:4113598-4113648,chr6:4113598-4113648.1,TTTNAAGGTCTTCATTTCCT,TTTNAAGGTCTTCATTTCCT,AAA,27,2:0 | 3:27,N/A,N/A,2,NC_000006.12:4113599-4113622,+,
+chr6:4113598-4113648,chr6:4113598-4113648.2,TTTNAAAGGTCTTCATTTCC,TTTNAAAGGTCTTCATTTCC,TAA,47,2:1 | 3:46,N/A,N/A,3,NC_000006.12:4113598-4113621,+,
+chr6:4113598-4113648,chr6:4113598-4113648.3,TTNGGAAATGAAGACCTTTA,TAAAGGTCTTCATTTCCNAA,AAA,69,2:3 | 3:66,N/A,N/A,4,NC_000006.12:4113598-4113621,-,
+chr7:23229420-23229470,chr7:23229420-23229470.0,TTNGTAACTCCAAATTACAA,TTGTAATTTGGAGTTACNAA,CAG,7,2:0 | 3:7,N/A,N/A,1,NC_000007.14:23229425-23229448,-,
+chr7:23229420-23229470,chr7:23229420-23229470.1,TTNTTGTAACTCCAAATTAC,GTAATTTGGAGTTACAANAA,AAC,8,2:0 | 3:8,N/A,N/A,2,NC_000007.14:23229427-23229450,-,
+chr7:23229420-23229470,chr7:23229420-23229470.2,TTNTAACTCCAAATTACAAC,GTTGTAATTTGGAGTTANAA,AGT,14,2:0 | 3:14,N/A,N/A,3,NC_000007.14:23229424-23229447,-,
+chr7:23229420-23229470,chr7:23229420-23229470.3,TTNTGTAACTCCAAATTACA,TGTAATTTGGAGTTACANAA,ACA,16,2:0 | 3:16,N/A,N/A,4,NC_000007.14:23229426-23229449,-,
+chr7:23229420-23229470,chr7:23229420-23229470.4,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,N/A,N/A,5,NC_000007.14:23229434-23229457,+,
+chr8:16840044-16840094,chr8:16840044-16840094.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,N/A,N/A,1,NC_000008.11:16840056-16840079,+,
+chr8:27545234-27545284,chr8:27545234-27545284.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,N/A,N/A,1,NC_000008.11:27545253-27545276,+,
+chr8:27545234-27545284,chr8:27545234-27545284.1,TTNAACTGATTACAATTCAA,TTGAATTGTAATCAGTTNAA,TGA,29,2:1 | 3:28,N/A,N/A,2,NC_000008.11:27545235-27545258,-,
+chr8:27545234-27545284,chr8:27545234-27545284.2,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,N/A,N/A,3,NC_000008.11:27545241-27545264,-,
+chr8:27597139-27597189,chr8:27597139-27597189.0,TTNTAGCTTAGAATATTCTT,AAGAATATTCTAAGCTANAA,AAG,25,2:2 | 3:23,N/A,N/A,1,NC_000008.11:27597148-27597171,-,"epoxide hydrolase 2, transcript variant X1;clusterin, transcript variant 4"
+chr8:27632416-27632466,chr8:27632416-27632466.0,TTNGGCTCTCCGACATTGAA,TTCAATGTCGGAGAGCCNAA,AGC,1,2:0 | 3:1,N/A,N/A,1,NC_000008.11:27632441-27632464,-,
+chr8:27632416-27632466,chr8:27632416-27632466.1,TTNTTGGCTCTCCGACATTG,CAATGTCGGAGAGCCAANAA,AAA,1,2:0 | 3:1,N/A,N/A,2,NC_000008.11:27632443-27632466,-,
+chr8:27632416-27632466,chr8:27632416-27632466.2,TTNGCTCTCCGACATTGAAA,TTTCAATGTCGGAGAGCNAA,GCC,2,2:0 | 3:2,N/A,N/A,3,NC_000008.11:27632440-27632463,-,
+chr8:27632416-27632466,chr8:27632416-27632466.3,TTTNAATGTCGGAGAGCCAA,TTTNAATGTCGGAGAGCCAA,AAA,11,2:1 | 3:10,N/A,N/A,4,NC_000008.11:27632443-27632466,+,
+chr8:27654264-27654314,chr8:27654264-27654314.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,N/A,N/A,1,NC_000008.11:27654282-27654305,-,
+chr8:27654264-27654314,chr8:27654264-27654314.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,N/A,N/A,2,NC_000008.11:27654283-27654306,-,
+chr9:27491918-27491968,chr9:27491918-27491968.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,N/A,N/A,1,NC_000009.12:27491929-27491952,+,
+chr9:27491918-27491968,chr9:27491918-27491968.1,TTTNTAGGCATATCTCTTTT,TTTNTAGGCATATCTCTTTT,AAA,28,2:1 | 3:27,N/A,N/A,2,NC_000009.12:27491944-27491967,+,
+chr9:27491918-27491968,chr9:27491918-27491968.2,TTTNATAGGCATATCTCTTT,TTTNATAGGCATATCTCTTT,TAA,50,2:7 | 3:43,N/A,N/A,3,NC_000009.12:27491943-27491966,+,
+chr9:27491918-27491968,chr9:27491918-27491968.3,TTTNTTTGATATCACTACTT,TTTNTTTGATATCACTACTT,TTA,52,2:1 | 3:51,N/A,N/A,4,NC_000009.12:27491925-27491948,+,
+chr9:27511260-27511310,chr9:27511260-27511310.0,TTTNATAGAAAATCAGGCAG,TTTNATAGAAAATCAGGCAG,CCT,3,2:0 | 3:3,N/A,N/A,1,NC_000009.12:27511283-27511306,+,
+chr9:27511260-27511310,chr9:27511260-27511310.1,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,N/A,N/A,2,NC_000009.12:27511271-27511294,-,
+chr9:27511260-27511310,chr9:27511260-27511310.2,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,N/A,N/A,3,NC_000009.12:27511270-27511293,-,
+chr9:27543605-27543655,chr9:27543605-27543655.0,TTTNGAGGTTTTCCCAGATA,TTTNGAGGTTTTCCCAGATA,TTT,25,2:4 | 3:21,N/A,N/A,1,NC_000009.12:27543613-27543636,+,uncharacterized LOC107987057
+chr9:27543605-27543655,chr9:27543605-27543655.1,TTTNAGGTTTTCCCAGATAT,TTTNAGGTTTTCCCAGATAT,TTG,27,2:1 | 3:26,N/A,N/A,2,NC_000009.12:27543614-27543637,+,uncharacterized LOC107987057
+chr9:27543605-27543655,chr9:27543605-27543655.2,TTTNTGAGGTTTTCCCAGAT,TTTNTGAGGTTTTCCCAGAT,ATT,28,2:4 | 3:24,N/A,N/A,3,NC_000009.12:27543612-27543635,+,uncharacterized LOC107987057
+chr9:27543605-27543655,chr9:27543605-27543655.3,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,N/A,N/A,4,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+chr9:27543605-27543655,chr9:27543605-27543655.4,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,N/A,N/A,5,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+chr9:27558413-27558463,chr9:27558413-27558463.0,TTNGAGACTCTTTATAGACA,TGTCTATAAAGAGTCTCNAA,AAT,5,2:0 | 3:5,N/A,N/A,1,NC_000009.12:27558420-27558443,-,
+chr9:27558413-27558463,chr9:27558413-27558463.1,TTNAGACTCTTTATAGACAA,TTGTCTATAAAGAGTCTNAA,ATC,7,2:0 | 3:7,N/A,N/A,2,NC_000009.12:27558419-27558442,-,
+chr9:27558413-27558463,chr9:27558413-27558463.2,TTTNAGATTTGTCTATAAAG,TTTNAGATTTGTCTATAAAG,AGT,15,2:0 | 3:15,N/A,N/A,3,NC_000009.12:27558414-27558437,+,
+chr9:27558413-27558463,chr9:27558413-27558463.3,TTNTGAGACTCTTTATAGAC,GTCTATAAAGAGTCTCANAA,AAA,17,2:0 | 3:17,N/A,N/A,4,NC_000009.12:27558421-27558444,-,
+chr9:27558413-27558463,chr9:27558413-27558463.4,TTTNTCTATAAAGAGTCTCA,TTTNTCTATAAAGAGTCTCA,AAA,25,2:2 | 3:23,N/A,N/A,5,NC_000009.12:27558421-27558444,+,
+chr9:27558413-27558463,chr9:27558413-27558463.5,TTNCTAAAATCATTTTTGAG,CTCAAAAATGATTTTAGNAA,ACT,48,2:3 | 3:45,N/A,N/A,6,NC_000009.12:27558434-27558457,-,
+chr9:27558413-27558463,chr9:27558413-27558463.6,TTNTAAAATCATTTTTGAGA,TCTCAAAAATGATTTTANAA,CTC,71,2:3 | 3:68,N/A,N/A,7,NC_000009.12:27558433-27558456,-,
+chr9:27584035-27584085,chr9:27584035-27584085.0,TTTNACATCAGTTTAAAATT,TTTNACATCAGTTTAAAATT,TGA,91,2:3 | 3:88,N/A,N/A,1,NC_000009.12:27584039-27584062,+,
+chr9:27584035-27584085,chr9:27584035-27584085.1,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,N/A,N/A,2,NC_000009.12:27584050-27584073,+,

data/GuideScan2/GuideScan2_50bp_cpf1.csv

@@ -0,0 +1,221 @@
+query,Region-name,gRNA-ID,gRNA-Seq,Target-Seq,PAM,Number of off-targets,Off-target summary,Cutting efficiency,Specificity,Rank,Coordinates,Strand,Annotations
+rs71630614,chr1:156102400-156102450,chr1:156102400-156102450.0,TTTNAGTCCTGGTTCTGTCA,TTTNAGTCCTGGTTCTGTCA,CCT,70,2:2 | 3:68,,,1,NC_000001.11:156102405-156102428,+,
+rs4575098,chr1:161185576-161185626,chr1:161185576-161185626.0,TTNAATGTATTAACATTTTA,TAAAATGTTAATACATTNAA,TTG,153,2:3 | 3:150,,,1,NC_000001.11:161185592-161185615,-,"ADAM metallopeptidase with thrombospondin type 1 motif 4, transcript variant 1"
+rs55636820,chr2:127054654-127054704,chr2:127054654-127054704.0,TTNAACCCAAGTGCCCCGGG,CCCGGGGCACTTGGGTTNAA,TGG,1,2:0 | 3:1,,,1,NC_000002.12:127054673-127054696,-,
+rs55636820,chr2:127054654-127054704,chr2:127054654-127054704.1,TTNACCCAAGTGCCCCGGGT,ACCCGGGGCACTTGGGTNAA,GGT,2,2:0 | 3:2,,,2,NC_000002.12:127054672-127054695,-,
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.0,TTTNGGCAGTTTGAAGGGAC,TTTNGGCAGTTTGAAGGGAC,TCG,0,2:0 | 3:0,,,1,NC_000002.12:127068949-127068972,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.1,TTTNGCAGTTTGAAGGGACT,TTTNGCAGTTTGAAGGGACT,CGT,0,2:0 | 3:0,,,2,NC_000002.12:127068950-127068973,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.2,TTTNAAGGGACTCGTAGTGG,TTTNAAGGGACTCGTAGTGG,TGC,0,2:0 | 3:0,,,3,NC_000002.12:127068958-127068981,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.3,TTTNTGGCAGTTTGAAGGGA,TTTNTGGCAGTTTGAAGGGA,CTC,2,2:0 | 3:2,,,4,NC_000002.12:127068948-127068971,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.4,TTTNGGCTTCATCCTTCTTT,TTTNGGCTTCATCCTTCTTT,TTG,13,2:0 | 3:13,,,5,NC_000002.12:127068931-127068954,+,"bridging integrator 1, transcript variant 15"
+rs1060743,chr2:127068931-127068981,chr2:127068931-127068981.5,TTTNGCTTCATCCTTCTTTT,TTTNGCTTCATCCTTCTTTT,TGG,25,2:0 | 3:25,,,6,NC_000002.12:127068932-127068955,+,"bridging integrator 1, transcript variant 15"
+rs11693422,chr2:127084560-127084610,chr2:127084560-127084610.0,TTTNAGCGTTCCCTCATGCT,TTTNAGCGTTCCCTCATGCT,CAG,2,2:0 | 3:2,,,1,NC_000002.12:127084581-127084604,+,
+rs4663096,chr2:127104164-127104214,chr2:127104164-127104214.0,TTNGGCCTGACGCAGGCTGA,TCAGCCTGCGTCAGGCCNAA,TGG,2,2:0 | 3:2,,,1,NC_000002.12:127104176-127104199,-,
+rs4663096,chr2:127104164-127104214,chr2:127104164-127104214.1,TTNGAACAAGGGATTTGGGC,GCCCAAATCCCTTGTTCNAA,CTG,3,2:0 | 3:3,,,2,NC_000002.12:127104190-127104213,-,
+rs4663096,chr2:127104164-127104214,chr2:127104164-127104214.2,TTNAACAAGGGATTTGGGCC,GGCCCAAATCCCTTGTTNAA,TGA,5,2:0 | 3:5,,,3,NC_000002.12:127104189-127104212,-,
+rs4663096,chr2:127104164-127104214,chr2:127104164-127104214.3,TTNTGAACAAGGGATTTGGG,CCCAAATCCCTTGTTCANAA,CCT,5,2:0 | 3:5,,,4,NC_000002.12:127104191-127104214,-,
+rs7594230,chr2:127115966-127116016,chr2:127115966-127116016.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs7594230,chr2:127115966-127116016,chr2:127115966-127116016.0,TTTNTTTATCAACACGCCCA,TTTNTTTATCAACACGCCCA,CAA,3,2:0 | 3:3,,,1,NC_000002.12:127115976-127115999,+,
+rs35968837,chr2:127133331-127133381,chr2:127133331-127133381.0,TTNTGTTATTAGAGGTGTGA,TCACACCTCTAATAACANAA,CCC,12,2:0 | 3:12,,,1,NC_000002.12:127133344-127133367,-,
+rs57891859,chr2:134707020-134707070,chr2:134707020-134707070.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707020-134707070,chr2:134707020-134707070.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs57891859,chr2:134707020-134707070,chr2:134707020-134707070.0,TTTNTCGTTCCCAAGCACAC,TTTNTCGTTCCCAAGCACAC,CCA,1,2:0 | 3:1,,,1,NC_000002.12:134707033-134707056,+,
+rs6599389,chr4:945299-945349,chr4:945299-945349.0,TTTNTTGCTGCCTCAGCTTC,TTTNTTGCTGCCTCAGCTTC,TGT,24,2:0 | 3:24,,,1,NC_000004.12:945325-945348,+,
+rs6599389,chr4:945299-945349,chr4:945299-945349.0,TTTNTTGCTGCCTCAGCTTC,TTTNTTGCTGCCTCAGCTTC,TGT,24,2:0 | 3:24,,,1,NC_000004.12:945325-945348,+,
+rs17783233,chr4:982784-982834,chr4:982784-982834.0,TTNAGTGAGGTGTGGGGAGA,TCTCCCCACACCTCACTNAA,CAC,7,2:0 | 3:7,,,1,NC_000004.12:982785-982808,-,
+rs17783233,chr4:982784-982834,chr4:982784-982834.1,TTNTTTCAGTGAGGTGTGGG,CCCACACCTCACTGAAANAA,GAG,17,2:1 | 3:16,,,2,NC_000004.12:982789-982812,-,
+rs1430961,chr4:89631743-89631793,chr4:89631743-89631793.0,TTTNAAACTACATAAAACCT,TTTNAAACTACATAAAACCT,TGA,21,2:0 | 3:21,,,1,NC_000004.12:89631743-89631766,+,
+rs1430961,chr4:89631743-89631793,chr4:89631743-89631793.0,TTTNAAACTACATAAAACCT,TTTNAAACTACATAAAACCT,TGA,21,2:0 | 3:21,,,1,NC_000004.12:89631743-89631766,+,
+rs72657707,chr4:89657334-89657384,chr4:89657334-89657384.0,TTNATTGTTCACTGAATCTT,AAGATTCAGTGAACAATNAA,AAA,28,2:0 | 3:28,,,1,NC_000004.12:89657343-89657366,-,
+rs72657707,chr4:89657334-89657384,chr4:89657334-89657384.1,TTTNAGATTCAGTGAACAAT,TTTNAGATTCAGTGAACAAT,GAA,29,2:1 | 3:28,,,2,NC_000004.12:89657343-89657366,+,
+rs114088559,chr4:89689150-89689200,chr4:89689150-89689200.0,TTNAAGATGCAGGTAGGGAG,CTCCCTACCTGCATCTTNAA,CCA,58,2:7 | 3:51,,,1,NC_000004.12:89689164-89689187,-,
+rs356162,chr4:89775980-89776030,chr4:89775980-89776030.0,TTTNTGGCCAGCACCTCAGT,TTTNTGGCCAGCACCTCAGT,ACC,3,2:0 | 3:3,,,1,NC_000004.12:89775980-89776003,+,
+rs3775434,chr4:89781604-89781654,chr4:89781604-89781654.0,TTNAGAGTAAATGTGAGCTG,CAGCTCACATTTACTCTNAA,CAA,7,2:0 | 3:7,,,1,NC_000004.12:89781620-89781643,-,
+rs6841352,chr4:89860478-89860528,chr4:89860478-89860528.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,,,1,NC_000004.12:89860499-89860522,-,
+rs6841352,chr4:89860478-89860528,chr4:89860478-89860528.0,TTNGTGTATCTAGAAGGACA,TGTCCTTCTAGATACACNAA,AAA,7,2:2 | 3:5,,,1,NC_000004.12:89860499-89860522,-,
+rs79485747,chr6:40783111-40783161,chr6:40783111-40783161.0,TTNAGCTGAGCACAGAGGGC,GCCCTCTGTGCTCAGCTNAA,TGA,9,2:1 | 3:8,,,1,NC_000006.12:40783115-40783138,-,
+rs13207334,chr6:47416128-47416178,chr6:47416128-47416178.0,TTTNTTAGTCTTCAATTCCT,TTTNTTAGTCTTCAATTCCT,TGC,26,2:0 | 3:26,,,1,NC_000006.12:47416154-47416177,+,
+rs1637190,chr7:23229420-23229470,chr7:23229420-23229470.0,TTNGTAACTCCAAATTACAA,TTGTAATTTGGAGTTACNAA,CAG,7,2:0 | 3:7,,,1,NC_000007.14:23229425-23229448,-,
+rs1637190,chr7:23229420-23229470,chr7:23229420-23229470.1,TTNTTGTAACTCCAAATTAC,GTAATTTGGAGTTACAANAA,AAC,8,2:0 | 3:8,,,2,NC_000007.14:23229427-23229450,-,
+rs1637190,chr7:23229420-23229470,chr7:23229420-23229470.2,TTNTAACTCCAAATTACAAC,GTTGTAATTTGGAGTTANAA,AGT,14,2:0 | 3:14,,,3,NC_000007.14:23229424-23229447,-,
+rs1637190,chr7:23229420-23229470,chr7:23229420-23229470.3,TTNTGTAACTCCAAATTACA,TGTAATTTGGAGTTACANAA,ACA,16,2:0 | 3:16,,,4,NC_000007.14:23229426-23229449,-,
+rs1637190,chr7:23229420-23229470,chr7:23229420-23229470.4,TTTNGAGTTACAAAAAATGC,TTTNGAGTTACAAAAAATGC,TCT,32,2:0 | 3:32,,,5,NC_000007.14:23229434-23229457,+,
+rs620490,chr8:16840044-16840094,chr8:16840044-16840094.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840044-16840094,chr8:16840044-16840094.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs620490,chr8:16840044-16840094,chr8:16840044-16840094.0,TTTNAATTCTTGGTTGGGGA,TTTNAATTCTTGGTTGGGGA,TTG,3,2:0 | 3:3,,,1,NC_000008.11:16840056-16840079,+,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.1,TTNAACTGATTACAATTCAA,TTGAATTGTAATCAGTTNAA,TGA,29,2:1 | 3:28,,,2,NC_000008.11:27545235-27545258,-,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.2,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,3,NC_000008.11:27545241-27545264,-,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.1,TTNAACTGATTACAATTCAA,TTGAATTGTAATCAGTTNAA,TGA,29,2:1 | 3:28,,,2,NC_000008.11:27545235-27545258,-,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.2,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,3,NC_000008.11:27545241-27545264,-,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.0,TTTNAAGTTAAATAGCAGCA,TTTNAAGTTAAATAGCAGCA,GCT,13,2:2 | 3:11,,,1,NC_000008.11:27545253-27545276,+,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.1,TTNAACTGATTACAATTCAA,TTGAATTGTAATCAGTTNAA,TGA,29,2:1 | 3:28,,,2,NC_000008.11:27545235-27545258,-,
+rs7341557,chr8:27545234-27545284,chr8:27545234-27545284.2,TTNACTTTAAACTGATTACA,TGTAATCAGTTTAAAGTNAA,ATT,68,2:1 | 3:67,,,3,NC_000008.11:27545241-27545264,-,
+rs9331950,chr8:27597139-27597189,chr8:27597139-27597189.0,TTNTAGCTTAGAATATTCTT,AAGAATATTCTAAGCTANAA,AAG,25,2:2 | 3:23,,,1,NC_000008.11:27597148-27597171,-,"epoxide hydrolase 2, transcript variant X1;clusterin, transcript variant 4"
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.0,TTNGGCTCTCCGACATTGAA,TTCAATGTCGGAGAGCCNAA,AGC,1,2:0 | 3:1,,,1,NC_000008.11:27632441-27632464,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.1,TTNTTGGCTCTCCGACATTG,CAATGTCGGAGAGCCAANAA,AAA,1,2:0 | 3:1,,,2,NC_000008.11:27632443-27632466,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.2,TTNGCTCTCCGACATTGAAA,TTTCAATGTCGGAGAGCNAA,GCC,2,2:0 | 3:2,,,3,NC_000008.11:27632440-27632463,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.3,TTTNAATGTCGGAGAGCCAA,TTTNAATGTCGGAGAGCCAA,AAA,11,2:1 | 3:10,,,4,NC_000008.11:27632443-27632466,+,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.0,TTNGGCTCTCCGACATTGAA,TTCAATGTCGGAGAGCCNAA,AGC,1,2:0 | 3:1,,,1,NC_000008.11:27632441-27632464,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.1,TTNTTGGCTCTCCGACATTG,CAATGTCGGAGAGCCAANAA,AAA,1,2:0 | 3:1,,,2,NC_000008.11:27632443-27632466,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.2,TTNGCTCTCCGACATTGAAA,TTTCAATGTCGGAGAGCNAA,GCC,2,2:0 | 3:2,,,3,NC_000008.11:27632440-27632463,-,
+rs485902,chr8:27632416-27632466,chr8:27632416-27632466.3,TTTNAATGTCGGAGAGCCAA,TTTNAATGTCGGAGAGCCAA,AAA,11,2:1 | 3:10,,,4,NC_000008.11:27632443-27632466,+,
+rs35112405,chr8:27654264-27654314,chr8:27654264-27654314.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,,,1,NC_000008.11:27654282-27654305,-,
+rs35112405,chr8:27654264-27654314,chr8:27654264-27654314.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,,,2,NC_000008.11:27654283-27654306,-,
+rs35112405,chr8:27654264-27654314,chr8:27654264-27654314.0,TTNGGGCTGTGACGCTAACA,TGTTAGCGTCACAGCCCNAA,ATT,1,2:0 | 3:1,,,1,NC_000008.11:27654282-27654305,-,
+rs35112405,chr8:27654264-27654314,chr8:27654264-27654314.1,TTNGGGGCTGTGACGCTAAC,GTTAGCGTCACAGCCCCNAA,AAT,1,2:0 | 3:1,,,2,NC_000008.11:27654283-27654306,-,
+rs139185008,chr9:27491918-27491968,chr9:27491918-27491968.0,TTTNATATCACTACTTTTAT,TTTNATATCACTACTTTTAT,AGG,14,2:0 | 3:14,,,1,NC_000009.12:27491929-27491952,+,
+rs139185008,chr9:27491918-27491968,chr9:27491918-27491968.1,TTTNTAGGCATATCTCTTTT,TTTNTAGGCATATCTCTTTT,AAA,28,2:1 | 3:27,,,2,NC_000009.12:27491944-27491967,+,
+rs139185008,chr9:27491918-27491968,chr9:27491918-27491968.2,TTTNATAGGCATATCTCTTT,TTTNATAGGCATATCTCTTT,TAA,50,2:7 | 3:43,,,3,NC_000009.12:27491943-27491966,+,
+rs139185008,chr9:27491918-27491968,chr9:27491918-27491968.3,TTTNTTTGATATCACTACTT,TTTNTTTGATATCACTACTT,TTA,52,2:1 | 3:51,,,4,NC_000009.12:27491925-27491948,+,
+rs2484314,chr9:27511260-27511310,chr9:27511260-27511310.0,TTTNATAGAAAATCAGGCAG,TTTNATAGAAAATCAGGCAG,CCT,3,2:0 | 3:3,,,1,NC_000009.12:27511283-27511306,+,
+rs2484314,chr9:27511260-27511310,chr9:27511260-27511310.1,TTNCTATTAAACTGTTATTT,AAATAACAGTTTAATAGNAA,AAG,78,2:8 | 3:70,,,2,NC_000009.12:27511271-27511294,-,
+rs2484314,chr9:27511260-27511310,chr9:27511260-27511310.2,TTNTATTAAACTGTTATTTA,TAAATAACAGTTTAATANAA,AGT,130,2:8 | 3:122,,,3,NC_000009.12:27511270-27511293,-,
+rs147599399,chr9:27543605-27543655,chr9:27543605-27543655.0,TTTNGAGGTTTTCCCAGATA,TTTNGAGGTTTTCCCAGATA,TTT,25,2:4 | 3:21,,,1,NC_000009.12:27543613-27543636,+,uncharacterized LOC107987057
+rs147599399,chr9:27543605-27543655,chr9:27543605-27543655.1,TTTNAGGTTTTCCCAGATAT,TTTNAGGTTTTCCCAGATAT,TTG,27,2:1 | 3:26,,,2,NC_000009.12:27543614-27543637,+,uncharacterized LOC107987057
+rs147599399,chr9:27543605-27543655,chr9:27543605-27543655.2,TTTNTGAGGTTTTCCCAGAT,TTTNTGAGGTTTTCCCAGAT,ATT,28,2:4 | 3:24,,,3,NC_000009.12:27543612-27543635,+,uncharacterized LOC107987057
+rs147599399,chr9:27543605-27543655,chr9:27543605-27543655.3,TTTNCCCAGATATTTGTTAT,TTTNCCCAGATATTTGTTAT,TGG,35,2:4 | 3:31,,,4,NC_000009.12:27543621-27543644,+,uncharacterized LOC107987057
+rs147599399,chr9:27543605-27543655,chr9:27543605-27543655.4,TTTNCCAGATATTTGTTATT,TTTNCCAGATATTTGTTATT,GGT,47,2:0 | 3:47,,,5,NC_000009.12:27543622-27543645,+,uncharacterized LOC107987057
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.0,TTNGAGACTCTTTATAGACA,TGTCTATAAAGAGTCTCNAA,AAT,5,2:0 | 3:5,,,1,NC_000009.12:27558420-27558443,-,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.1,TTNAGACTCTTTATAGACAA,TTGTCTATAAAGAGTCTNAA,ATC,7,2:0 | 3:7,,,2,NC_000009.12:27558419-27558442,-,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.2,TTTNAGATTTGTCTATAAAG,TTTNAGATTTGTCTATAAAG,AGT,15,2:0 | 3:15,,,3,NC_000009.12:27558414-27558437,+,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.3,TTNTGAGACTCTTTATAGAC,GTCTATAAAGAGTCTCANAA,AAA,17,2:0 | 3:17,,,4,NC_000009.12:27558421-27558444,-,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.4,TTTNTCTATAAAGAGTCTCA,TTTNTCTATAAAGAGTCTCA,AAA,25,2:2 | 3:23,,,5,NC_000009.12:27558421-27558444,+,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.5,TTNCTAAAATCATTTTTGAG,CTCAAAAATGATTTTAGNAA,ACT,48,2:3 | 3:45,,,6,NC_000009.12:27558434-27558457,-,
+rs17696570,chr9:27558413-27558463,chr9:27558413-27558463.6,TTNTAAAATCATTTTTGAGA,TCTCAAAAATGATTTTANAA,CTC,71,2:3 | 3:68,,,7,NC_000009.12:27558433-27558456,-,
+rs34555425,chr9:27584035-27584085,chr9:27584035-27584085.0,TTTNACATCAGTTTAAAATT,TTTNACATCAGTTTAAAATT,TGA,91,2:3 | 3:88,,,1,NC_000009.12:27584039-27584062,+,
+rs34555425,chr9:27584035-27584085,chr9:27584035-27584085.1,TTTNAAATTTGAATACAAAC,TTTNAAATTTGAATACAAAC,AAA,127,2:11 | 3:116,,,2,NC_000009.12:27584050-27584073,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.0,TTTNACCAAGATGGCTGCTT,TTTNACCAAGATGGCTGCTT,TTA,11,2:0 | 3:11,,,1,NC_000010.11:59908034-59908057,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.1,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,,,2,NC_000010.11:59908052-59908075,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.2,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,,,3,NC_000010.11:59908053-59908076,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.3,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,4,NC_000010.11:59908047-59908070,-,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.0,TTTNACCAAGATGGCTGCTT,TTTNACCAAGATGGCTGCTT,TTA,11,2:0 | 3:11,,,1,NC_000010.11:59908034-59908057,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.1,TTTNAGCAAACAGCTTAAAT,TTTNAGCAAACAGCTTAAAT,GCC,14,2:1 | 3:13,,,2,NC_000010.11:59908052-59908075,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.2,TTTNGCAAACAGCTTAAATG,TTTNGCAAACAGCTTAAATG,CCA,14,2:0 | 3:14,,,3,NC_000010.11:59908053-59908076,+,
+rs1171832,chr10:59908033-59908083,chr10:59908033-59908083.3,TTNAGCTGTTTGCTAAAAGC,GCTTTTAGCAAACAGCTNAA,AGC,15,2:0 | 3:15,,,4,NC_000010.11:59908047-59908070,-,
+rs188789342,chr10:119612790-119612840,chr10:119612790-119612840.0,TTTNCTGAACAGGTGGCGGG,TTTNCTGAACAGGTGGCGGG,CGC,0,2:0 | 3:0,,,1,NC_000010.11:119612799-119612822,+,
+rs11039212,chr11:47371726-47371776,chr11:47371726-47371776.0,TTTNCCTGCTCAGAACTCCC,TTTNCCTGCTCAGAACTCCC,CAG,14,2:3 | 3:11,,,1,NC_000011.10:47371752-47371775,+,
+rs10769263,chr11:47395606-47395656,chr11:47395606-47395656.0,TTNTTATAGCCATGAAATGC,GCATTTCATGGCTATAANAA,TCT,14,2:0 | 3:14,,,1,NC_000011.10:47395615-47395638,-,"Spi-1 proto-oncogene, transcript variant X1"
+rs10769263,chr11:47395606-47395656,chr11:47395606-47395656.1,TTTNATGGCTATAATAAATC,TTTNATGGCTATAATAAATC,AAA,20,2:1 | 3:19,,,2,NC_000011.10:47395621-47395644,+,"Spi-1 proto-oncogene, transcript variant X1"
+rs10769263,chr11:47395606-47395656,chr11:47395606-47395656.2,TTNATTTATTATAGCCATGA,TCATGGCTATAATAAATNAA,AAT,99,2:7 | 3:92,,,3,NC_000011.10:47395620-47395643,-,"Spi-1 proto-oncogene, transcript variant X1"
+rs55661415,chr11:60184817-60184867,chr11:60184817-60184867.0,TTTNCAGAGTCTGAATTCTA,TTTNCAGAGTCTGAATTCTA,CCA,10,2:0 | 3:10,,,1,NC_000011.10:60184817-60184840,+,
+rs652303,chr11:60202548-60202598,chr11:60202548-60202598.0,TTNGGTAATAGCTCTCAGTT,AACTGAGAGCTATTACCNAA,GGC,0,2:0 | 3:0,,,1,NC_000011.10:60202548-60202571,-,
+rs652303,chr11:60202548-60202598,chr11:60202548-60202598.1,TTNGAAACTAGGACTGTTTT,AAAACAGTCCTAGTTTCNAA,CGG,1,2:0 | 3:1,,,2,NC_000011.10:60202572-60202595,-,
+rs652303,chr11:60202548-60202598,chr11:60202548-60202598.2,TTNCGGTTTGGGTAATAGCT,AGCTATTACCCAAACCGNAA,CTC,2,2:0 | 3:2,,,3,NC_000011.10:60202555-60202578,-,
+rs652303,chr11:60202548-60202598,chr11:60202548-60202598.3,TTNGGTTTGGGTAATAGCTC,GAGCTATTACCCAAACCNAA,TCA,4,2:0 | 3:4,,,4,NC_000011.10:60202554-60202577,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,,,1,NC_000011.10:60322902-60322925,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.1,TTNAAGCTACAATATAGTTT,AAACTATATTGTAGCTTNAA,CGG,5,2:0 | 3:5,,,2,NC_000011.10:60322903-60322926,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.2,TTNTTTTAAGCTACAATATA,TATATTGTAGCTTAAAANAA,GTT,64,2:1 | 3:63,,,3,NC_000011.10:60322907-60322930,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.0,TTNAGCTACAATATAGTTTC,GAAACTATATTGTAGCTNAA,GGT,4,2:0 | 3:4,,,1,NC_000011.10:60322902-60322925,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.1,TTNAAGCTACAATATAGTTT,AAACTATATTGTAGCTTNAA,CGG,5,2:0 | 3:5,,,2,NC_000011.10:60322903-60322926,-,
+rs7945487,chr11:60322880-60322930,chr11:60322880-60322930.2,TTNTTTTAAGCTACAATATA,TATATTGTAGCTTAAAANAA,GTT,64,2:1 | 3:63,,,3,NC_000011.10:60322907-60322930,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,,,1,NC_000011.10:86158687-86158710,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,2,NC_000011.10:86158686-86158709,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,,,3,NC_000011.10:86158688-86158711,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.0,TTNGTCTTGCATATCGTAGG,CCTACGATATGCAAGACNAA,AGG,0,2:0 | 3:0,,,1,NC_000011.10:86158687-86158710,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.1,TTNTCTTGCATATCGTAGGA,TCCTACGATATGCAAGANAA,GGT,2,2:0 | 3:2,,,2,NC_000011.10:86158686-86158709,-,
+rs7113976,chr11:86158669-86158719,chr11:86158669-86158719.2,TTNTGTCTTGCATATCGTAG,CTACGATATGCAAGACANAA,GAG,3,2:0 | 3:3,,,3,NC_000011.10:86158688-86158711,-,
+rs11603136,chr11:86163254-86163304,chr11:86163254-86163304.0,TTTNATTCAAACAGCATATA,TTTNATTCAAACAGCATATA,TTG,25,2:0 | 3:25,,,1,NC_000011.10:86163269-86163292,+,
+rs11603136,chr11:86163254-86163304,chr11:86163254-86163304.1,TTTNTTCAAACAGCATATAT,TTTNTTCAAACAGCATATAT,TGT,33,2:0 | 3:33,,,2,NC_000011.10:86163270-86163293,+,
+rs11603136,chr11:86163254-86163304,chr11:86163254-86163304.2,TTTNATTTTATTCAAACAGC,TTTNATTTTATTCAAACAGC,ATA,89,2:2 | 3:87,,,3,NC_000011.10:86163264-86163287,+,
+rs11223616,chr11:133902917-133902967,chr11:133902917-133902967.0,TTNATATAAGCCATGGGAGG,CCTCCCATGGCTTATATNAA,GGC,1,2:0 | 3:1,,,1,NC_000011.10:133902925-133902948,-,immunoglobulin superfamily member 9B
+rs11223616,chr11:133902917-133902967,chr11:133902917-133902967.1,TTNCATATAAGCCATGGGAG,CTCCCATGGCTTATATGNAA,GGG,1,2:0 | 3:1,,,2,NC_000011.10:133902926-133902949,-,immunoglobulin superfamily member 9B
+rs564123,chr11:133949496-133949546,chr11:133949496-133949546.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs564123,chr11:133949496-133949546,chr11:133949496-133949546.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,,,2,NC_000011.10:133949502-133949525,-,
+rs564123,chr11:133949496-133949546,chr11:133949496-133949546.0,TTNGTTTCCCCCTGTATTTG,CAAATACAGGGGGAAACNAA,GGT,6,2:0 | 3:6,,,1,NC_000011.10:133949507-133949530,-,
+rs564123,chr11:133949496-133949546,chr11:133949496-133949546.1,TTNCCCCTGTATTTGGGTTT,AAACCCAAATACAGGGGNAA,CTC,11,2:0 | 3:11,,,2,NC_000011.10:133949502-133949525,-,
+rs893136227,chr12:39936285-39936335,chr12:39936285-39936335.0,TTNGAGGTACTTCTAGTTCA,TGAACTAGAAGTACCTCNAA,AGC,2,2:0 | 3:2,,,1,NC_000012.12:39936307-39936330,-,
+rs28903073,chr12:40259682-40259732,chr12:40259682-40259732.0,TTNGTCGACAGAAACTAGTC,GACTAGTTTCTGTCGACNAA,TTT,0,2:0 | 3:0,,,1,NC_000012.12:40259693-40259716,-,
+rs28903073,chr12:40259682-40259732,chr12:40259682-40259732.1,TTNCATTTAGTCGACAGAAA,TTTCTGTCGACTAAATGNAA,CTA,2,2:1 | 3:1,,,2,NC_000012.12:40259699-40259722,-,
+rs28903073,chr12:40259682-40259732,chr12:40259682-40259732.2,TTTNTGTCGACTAAATGTAA,TTTNTGTCGACTAAATGTAA,ATC,5,2:0 | 3:5,,,3,NC_000012.12:40259702-40259725,+,
+rs1002038473,chr12:41036403-41036453,chr12:41036403-41036453.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,,,1,NC_000012.12:41036409-41036432,-,
+rs1002038473,chr12:41036403-41036453,chr12:41036403-41036453.0,TTNGCTTGGTTCTCTAAGTT,AACTTAGAGAACCAAGCNAA,AGT,23,2:0 | 3:23,,,1,NC_000012.12:41036409-41036432,-,
+rs764179564,chr12:41195587-41195637,chr12:41195587-41195637.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,,,1,NC_000012.12:41195608-41195631,-,
+rs764179564,chr12:41195587-41195637,chr12:41195587-41195637.0,TTNGATATAAATCAAAGTTT,AAACTTTGATTTATATCNAA,TTT,72,2:1 | 3:71,,,1,NC_000012.12:41195608-41195631,-,
+rs116900480,chr12:58262296-58262346,chr12:58262296-58262346.0,TTTNTCATGTAACTGTGTAG,TTTNTCATGTAACTGTGTAG,CAC,5,2:0 | 3:5,,,1,NC_000012.12:58262322-58262345,+,
+rs41292019,chr12:64455910-64455960,chr12:64455910-64455960.0,TTTNAGGCCAAGGAGCTACT,TTTNAGGCCAAGGAGCTACT,GCA,0,2:0 | 3:0,,,1,NC_000012.12:64455910-64455933,+,"TANK binding kinase 1, transcript variant X3"
+rs41292019,chr12:64455910-64455960,chr12:64455910-64455960.1,TTTNGGCCAAGGAGCTACTG,TTTNGGCCAAGGAGCTACTG,CAA,2,2:0 | 3:2,,,2,NC_000012.12:64455911-64455934,+,"TANK binding kinase 1, transcript variant X3"
+rs41292019,chr12:64455910-64455960,chr12:64455910-64455960.2,TTNCAGTAGCTCCTTGGCCT,AGGCCAAGGAGCTACTGNAA,AAA,2,2:0 | 3:2,,,3,NC_000012.12:64455911-64455934,-,"TANK binding kinase 1, transcript variant X3"
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.0,TTTNAGAGACCAAATAGAGC,TTTNAGAGACCAAATAGAGC,ATC,5,2:0 | 3:5,,,1,NC_000014.9:92464095-92464118,+,
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.1,TTTNAAGAGACCAAATAGAG,TTTNAAGAGACCAAATAGAG,CAT,8,2:0 | 3:8,,,2,NC_000014.9:92464094-92464117,+,
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.2,TTTNGGCTATGAGTGGGTTT,TTTNGGCTATGAGTGGGTTT,TTT,9,2:0 | 3:9,,,3,NC_000014.9:92464075-92464098,+,
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.3,TTTNTAAGAGACCAAATAGA,TTTNTAAGAGACCAAATAGA,GCA,10,2:0 | 3:10,,,4,NC_000014.9:92464093-92464116,+,
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.4,TTNGTCTCTTAAAAAACCCA,TGGGTTTTTTAAGAGACNAA,CTC,17,2:1 | 3:16,,,5,NC_000014.9:92464085-92464108,-,
+rs61977311,chr14:92464075-92464125,chr14:92464075-92464125.5,TTTNTTAAGAGACCAAATAG,TTTNTTAAGAGACCAAATAG,AGC,19,2:0 | 3:19,,,6,NC_000014.9:92464092-92464115,+,
+rs3098199,chr15:50529035-50529085,chr15:50529035-50529085.0,TTNCTGAAGGAAAGAAAGCA,TGCTTTCTTTCCTTCAGNAA,TGG,38,2:1 | 3:37,,,1,NC_000015.10:50529047-50529070,-,
+rs3098199,chr15:50529035-50529085,chr15:50529035-50529085.1,TTTNCTTCAGGAAATCTTTA,TTTNCTTCAGGAAATCTTTA,TTG,124,2:4 | 3:120,,,2,NC_000015.10:50529057-50529080,+,
+rs117618017,chr15:63277677-63277727,chr15:63277677-63277727.0,TTTNTGTCTTCACCATCGCC,TTTNTGTCTTCACCATCGCC,ACC,1,2:0 | 3:1,,,1,NC_000015.10:63277681-63277704,+,"aph-1 homolog B, gamma-secretase subunit, transcript variant X1"
+rs80257887,chr19:44516772-44516822,chr19:44516772-44516822.0,TTTNCCTGACCACTAGGGGT,TTTNCCTGACCACTAGGGGT,TGG,2,2:0 | 3:2,,,1,NC_000019.10:44516776-44516799,+,
+rs144908353,chr19:44575179-44575229,chr19:44575179-44575229.0,TTTNAGCAATAGGCGCTAAT,TTTNAGCAATAGGCGCTAAT,ATT,6,2:0 | 3:6,,,1,NC_000019.10:44575186-44575209,+,
+rs111780744,chr19:44663658-44663708,chr19:44663658-44663708.0,TTNGCGTCTTGCTTCCATGC,GCATGGAAGCAAGACGCNAA,CTC,4,2:0 | 3:4,,,1,NC_000019.10:44663666-44663689,-,"PVR cell adhesion molecule, transcript variant 1"
+rs80307900,chr19:44731916-44731966,chr19:44731916-44731966.0,TTTNCAAGTGAAACAGAGGG,TTTNCAAGTGAAACAGAGGG,GCT,4,2:0 | 3:4,,,1,NC_000019.10:44731918-44731941,+,
+rs80307900,chr19:44731916-44731966,chr19:44731916-44731966.1,TTTNTGAGCTTTTAGAGGGG,TTTNTGAGCTTTTAGAGGGG,AAC,7,2:0 | 3:7,,,2,NC_000019.10:44731940-44731963,+,
+rs80307900,chr19:44731916-44731966,chr19:44731916-44731966.0,TTTNCAAGTGAAACAGAGGG,TTTNCAAGTGAAACAGAGGG,GCT,4,2:0 | 3:4,,,1,NC_000019.10:44731918-44731941,+,
+rs80307900,chr19:44731916-44731966,chr19:44731916-44731966.1,TTTNTGAGCTTTTAGAGGGG,TTTNTGAGCTTTTAGAGGGG,AAC,7,2:0 | 3:7,,,2,NC_000019.10:44731940-44731963,+,
+rs2965102,chr19:44732663-44732713,chr19:44732663-44732713.0,TTNCACAGGATGGAACCTGA,TCAGGTTCCATCCTGTGNAA,GGA,14,2:0 | 3:14,,,1,NC_000019.10:44732681-44732704,-,
+rs62117205,chr19:44751983-44752033,chr19:44751983-44752033.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,,,1,NC_000019.10:44752005-44752028,-,
+rs62117205,chr19:44751983-44752033,chr19:44751983-44752033.1,TTNACATGTATAATTCATAT,ATATGAATTATACATGTNAA,AGT,55,2:0 | 3:55,,,2,NC_000019.10:44751983-44752006,-,
+rs62117205,chr19:44751983-44752033,chr19:44751983-44752033.0,TTNTGCCAGGTCCAGTGATA,TATCACTGGACCTGGCANAA,GTT,10,2:0 | 3:10,,,1,NC_000019.10:44752005-44752028,-,
+rs62117205,chr19:44751983-44752033,chr19:44751983-44752033.1,TTNACATGTATAATTCATAT,ATATGAATTATACATGTNAA,AGT,55,2:0 | 3:55,,,2,NC_000019.10:44751983-44752006,-,
+rs1466435,chr19:44839532-44839582,chr19:44839532-44839582.0,TTNCTACCAACTTCTCTTTA,TAAAGAGAAGTTGGTAGNAA,CTT,32,2:0 | 3:32,,,1,NC_000019.10:44839548-44839571,-,
+rs7255063,chr19:44849136-44849186,chr19:44849136-44849186.0,TTTNGGAATGGGGTCAGAGA,TTTNGGAATGGGGTCAGAGA,CAC,2,2:0 | 3:2,,,1,NC_000019.10:44849136-44849159,+,
+rs41290100,chr19:44867658-44867708,chr19:44867658-44867708.0,TTNCATTCCTGGAACGCGCC,GGCGCGTTCCAGGAATGNAA,CAG,3,2:0 | 3:3,,,1,NC_000019.10:44867676-44867699,-,
+rs34278513,chr19:44874861-44874911,chr19:44874861-44874911.0,TTNGCTCCGTGCCTTGGGGC,GCCCCAAGGCACGGAGCNAA,CGG,0,2:0 | 3:0,,,1,NC_000019.10:44874872-44874895,-,
+rs34278513,chr19:44874861-44874911,chr19:44874861-44874911.1,TTNCTCTTTGGCTCCGTGCC,GGCACGGAGCCAAAGAGNAA,TTG,1,2:0 | 3:1,,,2,NC_000019.10:44874879-44874902,-,
+rs34278513,chr19:44874861-44874911,chr19:44874861-44874911.2,TTNCCTCTTTGGCTCCGTGC,GCACGGAGCCAAAGAGGNAA,CTT,11,2:0 | 3:11,,,3,NC_000019.10:44874880-44874903,-,
+rs34278513,chr19:44874861-44874911,chr19:44874861-44874911.3,TTNTGCTTTTCCTCTTTGGC,GCCAAAGAGGAAAAGCANAA,TCC,54,2:9 | 3:45,,,4,NC_000019.10:44874887-44874910,-,
+rs73050293,chr19:44876463-44876513,chr19:44876463-44876513.0,TTNTGCAGGCATTATCTGAA,TTCAGATAATGCCTGCANAA,GGC,4,2:0 | 3:4,,,1,NC_000019.10:44876482-44876505,-,
+rs11668861,chr19:44877687-44877737,chr19:44877687-44877737.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs11668861,chr19:44877687-44877737,chr19:44877687-44877737.0,TTTNTGAGGACCCCACAGCA,TTTNTGAGGACCCCACAGCA,CAT,1,2:0 | 3:1,,,1,NC_000019.10:44877704-44877727,+,
+rs76692773,chr19:44890928-44890978,chr19:44890928-44890978.0,TTNGCCACGCCCGCTGAGGC,GCCTCAGCGGGCGTGGCNAA,ATC,0,2:0 | 3:0,,,1,NC_000019.10:44890948-44890971,-,
+rs76692773,chr19:44890928-44890978,chr19:44890928-44890978.1,TTNCCACGCCCGCTGAGGCA,TGCCTCAGCGGGCGTGGNAA,TCG,2,2:0 | 3:2,,,2,NC_000019.10:44890947-44890970,-,
+rs75627662,chr19:44910293-44910343,chr19:44910293-44910343.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,,,1,NC_000019.10:44910300-44910323,+,
+rs75627662,chr19:44910293-44910343,chr19:44910293-44910343.0,TTTNTTCTAAGCTATTTTCA,TTTNTTCTAAGCTATTTTCA,TTT,188,2:4 | 3:184,,,1,NC_000019.10:44910300-44910323,+,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.2,TTNCCCATTTTAGGGACATG,CATGTCCCTAAAATGGGNAA,AGT,8,2:0 | 3:8,,,3,NC_000019.10:44924389-44924412,-,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.0,TTNGGGACATGAGTAGGCTG,CAGCCTACTCATGTCCCNAA,AAG,2,2:0 | 3:2,,,1,NC_000019.10:44924380-44924403,-,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.1,TTNAGGGACATGAGTAGGCT,AGCCTACTCATGTCCCTNAA,GAA,7,2:0 | 3:7,,,2,NC_000019.10:44924381-44924404,-,
+rs4803771,chr19:44924365-44924415,chr19:44924365-44924415.2,TTNCCCATTTTAGGGACATG,CATGTCCCTAAAATGGGNAA,AGT,8,2:0 | 3:8,,,3,NC_000019.10:44924389-44924412,-,
+rs8102895,chr19:44955180-44955230,chr19:44955180-44955230.0,TTNTCCCAGCCCGTTTGTTT,AAACAAACGGGCTGGGANAA,CCA,7,2:0 | 3:7,,,1,NC_000019.10:44955183-44955206,-,
+rs2239375,chr19:44956568-44956618,chr19:44956568-44956618.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,,,1,NC_000019.10:44956576-44956599,-,
+rs2239375,chr19:44956568-44956618,chr19:44956568-44956618.0,TTNCTAAGCTGTCCCTGAAG,CTTCAGGGACAGCTTAGNAA,CCA,8,2:0 | 3:8,,,1,NC_000019.10:44956576-44956599,-,
+rs145639166,chr19:44965846-44965896,chr19:44965846-44965896.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,,,1,NC_000019.10:44965851-44965874,+,
+rs145639166,chr19:44965846-44965896,chr19:44965846-44965896.0,TTTNGCTAGAATGTCTTCAC,TTTNGCTAGAATGTCTTCAC,ATG,4,2:0 | 3:4,,,1,NC_000019.10:44965851-44965874,+,
+rs874743,chr19:45009952-45010002,chr19:45009952-45010002.0,TTTNAACGAAGTCATGCTCC,TTTNAACGAAGTCATGCTCC,TAA,3,2:0 | 3:3,,,1,NC_000019.10:45009953-45009976,+,
+rs874743,chr19:45009952-45010002,chr19:45009952-45010002.0,TTTNAACGAAGTCATGCTCC,TTTNAACGAAGTCATGCTCC,TAA,3,2:0 | 3:3,,,1,NC_000019.10:45009953-45009976,+,
+rs35912475,chr19:45019448-45019498,chr19:45019448-45019498.0,TTNCTAGAGGTGATTAATGA,TCATTAATCACCTCTAGNAA,GAT,26,2:0 | 3:26,,,1,NC_000019.10:45019475-45019498,-,
+rs76856627,chr19:45040471-45040521,chr19:45040471-45040521.0,TTTNTTGTAGCATACTGTGT,TTTNTTGTAGCATACTGTGT,CGT,2,2:0 | 3:2,,,1,NC_000019.10:45040485-45040508,+,
+rs112481437,chr19:45045851-45045901,chr19:45045851-45045901.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,,,1,NC_000019.10:45045858-45045881,+,
+rs112481437,chr19:45045851-45045901,chr19:45045851-45045901.0,TTTNGATCCAGGTGGAGGGA,TTTNGATCCAGGTGGAGGGA,TGG,4,2:0 | 3:4,,,1,NC_000019.10:45045858-45045881,+,
+rs79018068,chr19:45131570-45131620,chr19:45131570-45131620.0,TTNCATGCACAATTTCACTT,AAGTGAAATTGTGCATGNAA,GGC,14,2:0 | 3:14,,,1,NC_000019.10:45131572-45131595,-,
+rs78073763,chr19:45146554-45146604,chr19:45146554-45146604.0,TTTNTCCGGTCGGTCTGCGA,TTTNTCCGGTCGGTCTGCGA,TGA,0,2:0 | 3:0,,,1,NC_000019.10:45146575-45146598,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146554-45146604,chr19:45146554-45146604.1,TTTNCCGGTCGGTCTGCGAT,TTTNCCGGTCGGTCTGCGAT,GAG,0,2:0 | 3:0,,,2,NC_000019.10:45146576-45146599,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs78073763,chr19:45146554-45146604,chr19:45146554-45146604.2,TTTNCGGTCGGTCTGCGATG,TTTNCGGTCGGTCTGCGATG,AGC,0,2:0 | 3:0,,,3,NC_000019.10:45146577-45146600,+,"protein phosphatase 1 regulatory subunit 37, transcript variant X2"
+rs1005451,chr19:45148795-45148845,chr19:45148795-45148845.0,TTTNTTACTGTTGGGGGTTG,TTTNTTACTGTTGGGGGTTG,AAT,34,2:1 | 3:33,,,1,NC_000019.10:45148816-45148839,+,
+rs62118471,chr19:45187765-45187815,chr19:45187765-45187815.0,TTNTATTAGGGTCTGGGGCA,TGCCCCAGACCCTAATANAA,TCA,11,2:0 | 3:11,,,1,NC_000019.10:45187790-45187813,-,
+rs62118471,chr19:45187765-45187815,chr19:45187765-45187815.1,TTNGTATTAGGGTCTGGGGC,GCCCCAGACCCTAATACNAA,ATC,11,2:0 | 3:11,,,2,NC_000019.10:45187791-45187814,-,
+rs73566243,chr19:45193736-45193786,chr19:45193736-45193786.0,TTTNGCTGTGTAGTCACTGA,TTTNGCTGTGTAGTCACTGA,AGT,7,2:1 | 3:6,,,1,NC_000019.10:45193747-45193770,+,
+rs73566243,chr19:45193736-45193786,chr19:45193736-45193786.1,TTTNCTGTGTAGTCACTGAA,TTTNCTGTGTAGTCACTGAA,GTT,24,2:0 | 3:24,,,2,NC_000019.10:45193748-45193771,+,
+rs117783785,chr19:45195903-45195953,chr19:45195903-45195953.0,TTNATTCTGATTAGAATGCT,AGCATTCTAATCAGAATNAA,CTC,19,2:0 | 3:19,,,1,NC_000019.10:45195922-45195945,-,
+rs117783785,chr19:45195903-45195953,chr19:45195903-45195953.1,TTNCATTCTGATTAGAATGC,GCATTCTAATCAGAATGNAA,TCT,33,2:3 | 3:30,,,2,NC_000019.10:45195923-45195946,-,
+rs11667509,chr19:45212908-45212958,chr19:45212908-45212958.0,TTNACCCAACCCCAAACTCC,GGAGTTTGGGGTTGGGTNAA,CTG,6,2:1 | 3:5,,,1,NC_000019.10:45212916-45212939,-,exocyst complex component 3 like 2
+rs11667509,chr19:45212908-45212958,chr19:45212908-45212958.1,TTTNGGGTTGGGTGAAAAGA,TTTNGGGTTGGGTGAAAAGA,CAT,6,2:0 | 3:6,,,2,NC_000019.10:45212923-45212946,+,exocyst complex component 3 like 2
+rs11667509,chr19:45212908-45212958,chr19:45212908-45212958.2,TTNCACCCAACCCCAAACTC,GAGTTTGGGGTTGGGTGNAA,CCT,7,2:0 | 3:7,,,3,NC_000019.10:45212917-45212940,-,exocyst complex component 3 like 2
+rs345421,chr19:45266465-45266515,chr19:45266465-45266515.0,TTNTTCACTCCTCCTGTCCC,GGGACAGGAGGAGTGAANAA,CTC,35,2:1 | 3:34,,,1,NC_000019.10:45266492-45266515,-,
+rs345421,chr19:45266465-45266515,chr19:45266465-45266515.0,TTNTTCACTCCTCCTGTCCC,GGGACAGGAGGAGTGAANAA,CTC,35,2:1 | 3:34,,,1,NC_000019.10:45266492-45266515,-,
+rs183442275,chr19:45303269-45303319,chr19:45303269-45303319.0,TTTNTAAGTTATTACACCCC,TTTNTAAGTTATTACACCCC,GAC,0,2:0 | 3:0,,,1,NC_000019.10:45303278-45303301,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs183442275,chr19:45303269-45303319,chr19:45303269-45303319.1,TTTNAAGTTATTACACCCCG,TTTNAAGTTATTACACCCCG,ACC,1,2:0 | 3:1,,,2,NC_000019.10:45303279-45303302,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs183442275,chr19:45303269-45303319,chr19:45303269-45303319.2,TTTNAGTTATTACACCCCGA,TTTNAGTTATTACACCCCGA,CCC,1,2:0 | 3:1,,,3,NC_000019.10:45303280-45303303,+,"microtubule affinity regulating kinase 4, transcript variant 2"
+rs12973246,chr19:45332920-45332970,chr19:45332920-45332970.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs12973246,chr19:45332920-45332970,chr19:45332920-45332970.0,TTNTCGGTCCCGGCAAGGAG,CTCCTTGCCGGGACCGANAA,CGA,0,2:0 | 3:0,,,1,NC_000019.10:45332932-45332955,-,
+rs77988534,chr19:45341224-45341274,chr19:45341224-45341274.0,TTNACCCTCATACCCACAGC,GCTGTGGGTATGAGGGTNAA,CTG,7,2:0 | 3:7,,,1,NC_000019.10:45341241-45341264,-,
+rs10423015,chr19:45451762-45451812,chr19:45451762-45451812.0,TTTNCACTTGTGTATCTGGG,TTTNCACTTGTGTATCTGGG,TGT,14,2:0 | 3:14,,,1,NC_000019.10:45451778-45451801,+,
+rs10423015,chr19:45451762-45451812,chr19:45451762-45451812.1,TTTNTGTGGTTTGCACTTGT,TTTNTGTGGTTTGCACTTGT,GTA,24,2:1 | 3:23,,,2,NC_000019.10:45451769-45451792,+,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,,,1,NC_000021.9:26775853-26775876,-,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,,,2,NC_000021.9:26775852-26775875,-,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,,,3,NC_000021.9:26775851-26775874,-,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.0,TTNTGTCAAGTGTAATAGCC,GGCTATTACACTTGACANAA,ATG,2,2:0 | 3:2,,,1,NC_000021.9:26775853-26775876,-,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.1,TTNGTCAAGTGTAATAGCCA,TGGCTATTACACTTGACNAA,TGA,5,2:0 | 3:5,,,2,NC_000021.9:26775852-26775875,-,
+rs2830489,chr21:26775846-26775896,chr21:26775846-26775896.2,TTNTCAAGTGTAATAGCCAT,ATGGCTATTACACTTGANAA,GAG,7,2:0 | 3:7,,,3,NC_000021.9:26775851-26775874,-,

data/PnB Designer/PnB Designer_Base_editing_guides.csv

@@ -0,0 +1,354 @@
+query,Variant,Protospacer,EditPos.,PAM,Base.Editor
+rs147288664,chr1:g.152220451C>T,CTCCAACTCACGTCAGTCTT,6,CCA,SpRY-ABEmax (might have lower efficiency!)
+rs12726330,chr1:g.155135691G>A,GACCAAGGTACTGGGAAGGC,6,GCT,SpRY-ABEmax (might have lower efficiency!)
+rs76763715,chr1:g.155235843T>C,AGGCTCTAGGGTAAGGACAA,4,AGG,BE3-hA3A (R128A)
+rs76763715,chr1:g.155235843T>C,AGGCTCTAGGGTAAGGACAA,4,AGG,Target-AID
+rs75548401,chr1:g.155236246G>A,TTACCATGATGATGCTGTGG,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs71630614,chr1:g.156102426C>T,AGAGATGACAGAACCAGGAC,5,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs71630614,chr1:g.156102426C>T,CAGAGATGACAGAACCAGGA,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs4575098,chr1:g.161185602G>A,CCAATAAAATATTAATACAT,11,TGAAAT,SaKKH-ABEmax/ABE8e
+rs4575098,chr1:g.161185602G>A,AAAATATTAATACATTGAAA,6,TCC,SpRY-ABEmax (might have lower efficiency!)
+rs143080277,chr2:g.105749599T>C,GGTAGAGCTGTTTTTTTGTG,8,AGG,BE3-hA3A (R128A)
+rs55636820,chr2:g.127054680G>A,CACCCAGGGCACTTGGGTTA,6,AAA,SpRY-ABEmax (might have lower efficiency!)
+rs11694743,chr2:g.127085031A>G,CGGGGGACGGAGGGAGAACA,8,AGG,BE3-hA3A (R128A)
+rs10929006,chr2:g.127086585G>A,CACCACAACCTCTGCCTCCC,5,CGG,ABEmax/ABE8e
+rs10929006,chr2:g.127086585G>A,TCACCACAACCTCTGCCTCC,6,CCG,SpRY-ABEmax (might have lower efficiency!)
+rs13032148,chr2:g.127107524G>A,CGCCCAGAGCCCCCTCCTTT,6,TCC,SpRY-ABEmax (might have lower efficiency!)
+rs7594230,chr2:g.127115992G>A,AACACACCCACAAGCTATGA,6,AGC,SpG-ABEmax
+rs7594230,chr2:g.127115992G>A,AACACACCCACAAGCTATGA,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs57891859,chr2:g.134707046A>G,GTGCTCGGGAACGATAAACC,6,CGG,BE3 (R33A)
+rs57891859,chr2:g.134707046A>G,GTGCTCGGGAACGATAAACC,6,CGG,BE3-hA3A (R128A)
+rs57891859,chr2:g.134707046A>G,CTCGGGAACGATAAACCCGG,3,AGG,Target-AID
+rs4488803,chr3:g.58232625G>A,ATGAGAGCCTCAGTATGCTT,6,CCT,SpRY-ABEmax (might have lower efficiency!)
+rs73177394,chr3:g.182990299G>A,TCACCATAGTTGGAATTTTC,6,CCC,SpRY-ABEmax (might have lower efficiency!)
+rs3775121,chr4:g.899732G>A,CAGACACTCTCCAACCACAG,6,CGC,SpG-ABEmax
+rs3775121,chr4:g.899732G>A,CAGACACTCTCCAACCACAG,6,CGC,SpRY-ABEmax (might have lower efficiency!)
+rs6599388,chr4:g.945299C>T,AGACGACGGGGGCCTGGGGA,6,AAC,SpRY-ABEmax (might have lower efficiency!)
+rs6599389,chr4:g.945325G>A,CCGCCATTTGTTGCTGCCTC,6,AGC,SpG-ABEmax
+rs6599389,chr4:g.945325G>A,CCGCCATTTGTTGCTGCCTC,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs3733344,chr4:g.957252T>C,CCTTCACCTCCCGATGTTGA,8,AGG,BE3-hA3A (R128A)
+rs35519415,chr4:g.15708707A>G,GAGTTCGGATTTCTTCATGT,6,TGG,BE3 (R33A)
+rs35519415,chr4:g.15708707A>G,GAGTTCGGATTTCTTCATGT,6,TGG,BE3-hA3A (R128A)
+rs9291637,chr4:g.15722038G>A,TGGTGACTTGGAACTTCACA,6,TCT,SpRY-ABEmax (might have lower efficiency!)
+rs12640185,chr4:g.76211207T>C,GGGATACAGAATGAGGTACA,7,GGG,BE3 (R33A)
+rs12640185,chr4:g.76211207T>C,TGGGATACAGAATGAGGTAC,8,AGG,BE3-hA3A (R128A)
+rs12640185,chr4:g.76211207T>C,GGGATACAGAATGAGGTACA,7,GGG,BE3-hA3A (R128A)
+rs6811535,chr4:g.76277484C>T,GAGACAGAGTCTCGCTCTGT,6,CGC,SpG-ABEmax
+rs6811535,chr4:g.76277484C>T,GAGACAGAGTCTCGCTCTGT,6,CGC,SpRY-ABEmax (might have lower efficiency!)
+rs114088559,chr4:g.89689176C>T,NANANA,have you thought about using Prime Editing?,There is no Guide for this Variant!,
+rs3933594,chr4:g.89715268G>A,GGGCAGGGAACATCACACAC,5,TGG,ABEmax/ABE8e
+rs3933594,chr4:g.89715268G>A,AGGGCAGGGAACATCACACA,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs3775434,chr4:g.89781630A>G,AGTAAATGCGAGCTGCAATC,9,AGG,BE3-hA3A (R128A)
+rs2737029,chr4:g.89790619T>C,TACGGTTCCCCCAGTGTGAG,3,AGG,Target-AID
+rs10516853,chr4:g.89945668C>T,ATCGTAAACTGATTTATCCT,6,TTT,SpRY-ABEmax (might have lower efficiency!)
+rs1967688,chr6:g.32372291C>T,TGGCACATGCCTGTAATCCC,5,AGC,SpG-ABEmax
+rs1967688,chr6:g.32372291C>T,GTGGCACATGCCTGTAATCC,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs9268544,chr6:g.32417676G>A,CTCATGTGATGAGAATCTCA,4,AGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs9268544,chr6:g.32417676G>A,TTCTCATGTGATGAGAATCT,6,CAA,SpRY-ABEmax (might have lower efficiency!)
+rs9268840,chr6:g.32461027C>T,AAAAGTTTGTGAACCTGTGT,12,TGGGGT,Sa-ABEmax/ABE8e
+rs9268840,chr6:g.32461027C>T,AAAAGTTTGTGAACCTGTGT,12,TGGGGT,SaKKH-ABEmax/ABE8e
+rs9268840,chr6:g.32461027C>T,TTGTGAACCTGTGTTGGGGT,6,CAT,SpRY-ABEmax (might have lower efficiency!)
+rs482044,chr6:g.32608287G>A,GGGACAAATTATTAGCTATG,4,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs482044,chr6:g.32608287G>A,TAGGGACAAATTATTAGCTA,6,TGTGAT,SaKKH-ABEmax/ABE8e
+rs482044,chr6:g.32608287G>A,TAGGGACAAATTATTAGCTA,6,TGT,SpRY-ABEmax (might have lower efficiency!)
+rs9275111,chr6:g.32681958G>A,AAAAAAAAACCAATTCAATA,5,AGG,ABEmax/ABE8e
+rs9275111,chr6:g.32681958G>A,TAAAAAAAAAACCAATTCAA,7,TAAGGT,SaKKH-ABEmax/ABE8e
+rs9275111,chr6:g.32681958G>A,AAAAAAAAAACCAATTCAAT,6,AAG,SpRY-ABEmax (might have lower efficiency!)
+rs143202663,chr6:g.40897501T>C,CATACGTCCAGAGCCACCCC,9,AGG,BE3-hA3A (R128A)
+rs143332484,chr6:g.41161469C>T,CCAGCATGTGGTCAGCACGC,6,ACA,SpRY-ABEmax (might have lower efficiency!)
+rs9395259,chr6:g.47440244T>C,TGGCCAACATGGTGAAAACC,5,CGG,BE3 (R33A)
+rs9395259,chr6:g.47440244T>C,TGGCCAACATGGTGAAAACC,5,CGG,BE3-hA3A (R128A)
+rs9395259,chr6:g.47440244T>C,TGGCCAACATGGTGAAAACC,5,CGG,Target-AID
+rs6931011,chr6:g.47557466G>A,TTAGGTCTTACATTTAAATC,12,TGTAAT,SaKKH-ABEmax/ABE8e
+rs6931011,chr6:g.47557466G>A,CTTACATTTAAATCTGTAAT,6,CCA,SpRY-ABEmax (might have lower efficiency!)
+rs7782051,chr7:g.100240485T>C,CACTCGGGCCTGGGAGGCGG,5,AGG,BE3 (R33A)
+rs7782051,chr7:g.100240485T>C,GATCACTCGGGCCTGGGAGG,8,CGG,BE3-hA3A (R128A)
+rs7782051,chr7:g.100240485T>C,CACTCGGGCCTGGGAGGCGG,5,AGG,BE3-hA3A (R128A)
+rs7782051,chr7:g.100240485T>C,CACTCGGGCCTGGGAGGCGG,5,AGG,Target-AID
+rs620490,chr8:g.16840070T>C,ATTCTTGGCTGGGGATTGAG,9,TGG,BE3-hA3A (R128A)
+rs620490,chr8:g.16840070T>C,TTCTTGGCTGGGGATTGAGT,8,GGG,BE3-hA3A (R128A)
+rs7341557,chr8:g.27545260G>A,TAAAATTAAATAGCAGCAGC,5,TGC,SpG-ABEmax
+rs7341557,chr8:g.27545260G>A,TTAAAATTAAATAGCAGCAG,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs2640724,chr8:g.27558059G>A,GTGTTAGCCACAGCCCCTGG,6,GCC,SpRY-ABEmax (might have lower efficiency!)
+rs7831810,chr8:g.27572989A>G,TGGAATGCCCCTGTCCTCGA,9,AGG,BE3-hA3A (R128A)
+rs9331950,chr8:g.27597165G>A,CTAAACTATAAATTTACATG,5,TGG,ABEmax/ABE8e
+rs9331950,chr8:g.27597165G>A,TAAACTATAAATTTACATGT,4,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs9331950,chr8:g.27597165G>A,TCTAAACTATAAATTTACAT,6,GTG,SpRY-ABEmax (might have lower efficiency!)
+rs485902,chr8:g.27632442G>A,GTGGACTTTCAATGTCGGAG,5,AGC,SpG-ABEmax
+rs485902,chr8:g.27632442G>A,GGTGGACTTTCAATGTCGGA,6,GAG,SpRY-ABEmax (might have lower efficiency!)
+rs112136718,chr8:g.143868137C>T,TACCACTGCGGCTACTTCGA,5,CGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs112136718,chr8:g.143868137C>T,CTACCACTGCGGCTACTTCG,6,ACG,SpRY-ABEmax (might have lower efficiency!)
+rs148703839,chr9:g.27465415A>G,GCTGCACCCTGCAAAGCCAC,5,AGG,BE3 (R33A)
+rs148703839,chr9:g.27465415A>G,GCTGCACCCTGCAAAGCCAC,5,AGG,BE3-hA3A (R128A)
+rs148703839,chr9:g.27465415A>G,CTGCACCCTGCAAAGCCACA,4,GGG,BE3-hA3A (R128A)
+rs148703839,chr9:g.27465415A>G,GCTGCACCCTGCAAAGCCAC,5,AGG,Target-AID
+rs148703839,chr9:g.27465415A>G,CTGCACCCTGCAAAGCCACA,4,GGG,Target-AID
+rs148703839,chr9:g.27465415A>G,TGCACCCTGCAAAGCCACAG,3,GGG,Target-AID
+rs78752429,chr9:g.27466682C>T,CTGCCATATAAGAAGTGCCT,6,TCT,SpRY-ABEmax (might have lower efficiency!)
+rs4879515,chr9:g.27482237C>T,GTTTTTCCCATCCTTTAATG,10,TTAGGT,SaKKH-ABEmax/ABE8e
+rs1171832,chr10:g.59908059C>T,TGTTTACTAAAAGCAGCCAT,6,CTTGGT,SaKKH-ABEmax/ABE8e
+rs1171832,chr10:g.59908059C>T,TGTTTACTAAAAGCAGCCAT,6,CTT,SpRY-ABEmax (might have lower efficiency!)
+rs188789342,chr10:g.119612816C>T,CGCCCACCACCTGTTCAGGA,6,AAC,SpRY-ABEmax (might have lower efficiency!)
+rs117896735,chr10:g.119776815G>A,ATCCAATCATAGCTCACTGC,6,AGC,SpG-ABEmax
+rs117896735,chr10:g.119776815G>A,ATCCAATCATAGCTCACTGC,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs202122669,chr11:g.14892099G>A,CCATCAGCCGCCTCTGCTTC,6,AGC,SpG-ABEmax
+rs202122669,chr11:g.14892099G>A,CCATCAGCCGCCTCTGCTTC,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs1286170,chr11:g.60064457G>A,TTTCTTAACGTATTCAGATG,12,GTAGGT,SaKKH-ABEmax/ABE8e
+rs1286170,chr11:g.60064457G>A,CGTATTCAGATGGTAGGTCA,4,GCAGAT,SaKKH-ABEmax/ABE8e
+rs1286170,chr11:g.60064457G>A,ACGTATTCAGATGGTAGGTC,5,AGC,SpG-ABEmax
+rs1286170,chr11:g.60064457G>A,AACGTATTCAGATGGTAGGT,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs652303,chr11:g.60202574C>T,TTTTCAGTTTGGGTAATAGC,6,TCT,SpRY-ABEmax (might have lower efficiency!)
+rs7945487,chr11:g.60322906G>A,ACCAAAACTATATTGTAGCT,4,TAAAAT,SaKKH-ABEmax/ABE8e
+rs7945487,chr11:g.60322906G>A,ACACCAAAACTATATTGTAG,6,CTT,SpRY-ABEmax (might have lower efficiency!)
+rs4944549,chr11:g.85941208C>T,TTGGCAGGGCAGAGCCCAAT,6,ACA,SpRY-ABEmax (might have lower efficiency!)
+rs572979,chr11:g.86092234C>T,GCTGCAATTACAGGCATGAG,6,CCC,SpRY-ABEmax (might have lower efficiency!)
+rs67598967,chr11:g.86132155G>A,TGCCCAGCCGGGCCTGGTCA,6,TTC,SpRY-ABEmax (might have lower efficiency!)
+rs7113976,chr11:g.86158695C>T,ATATCATAGGAGGTACTTCC,6,TTA,SpRY-ABEmax (might have lower efficiency!)
+rs10444323,chr11:g.133941265C>T,GAGGAAAGGGCAGCCTATTT,6,CTA,SpRY-ABEmax (might have lower efficiency!)
+rs28903073,chr12:g.40259708G>A,CTAGTTTCTATCGACTAAAT,10,GTAAAT,SaKKH-ABEmax/ABE8e
+rs28903073,chr12:g.40259708G>A,TTTCTATCGACTAAATGTAA,6,ATC,SpRY-ABEmax (might have lower efficiency!)
+rs34637584,chr12:g.40340400G>A,ACTACAGCATTGCTCAGTAC,6,TGC,SpG-ABEmax
+rs34637584,chr12:g.40340400G>A,ACTACAGCATTGCTCAGTAC,6,TGC,SpRY-ABEmax (might have lower efficiency!)
+rs75505347,chr12:g.40491747C>T,CTTACAATCATAATTGGACG,6,TCT,SpRY-ABEmax (might have lower efficiency!)
+rs113247976,chr12:g.57581917C>T,CAAGAGGCCGCCAGAAGATG,5,TGG,ABEmax/ABE8e
+rs113247976,chr12:g.57581917C>T,AGGAAGCCAAGAGGCCGCCA,12,GAAGAT,SaKKH-ABEmax/ABE8e
+rs116900480,chr12:g.58262322C>T,ACAAAAAGTTAAGAATCCTG,6,CCA,SpRY-ABEmax (might have lower efficiency!)
+rs73124200,chr12:g.64555468G>A,CTACCAGCCGGGCACGGTGG,6,CTC,SpRY-ABEmax (might have lower efficiency!)
+rs12589020,chr14:g.52845284C>T,CAGCAAGAAAGCTGAAGCGT,9,GGGAAT,Sa-ABEmax/ABE8e
+rs12589020,chr14:g.52845284C>T,CAGCAAGAAAGCTGAAGCGT,9,GGGAAT,SaKKH-ABEmax/ABE8e
+rs12589020,chr14:g.52845284C>T,CAAGAAAGCTGAAGCGTGGG,6,AAT,SpRY-ABEmax (might have lower efficiency!)
+rs147767029,chr14:g.52951121C>T,CCAGACTCGGACAGAGGGGG,5,CGG,ABEmax/ABE8e
+rs147767029,chr14:g.52951121C>T,AGCCAGACTCGGACAGAGGG,7,GGCG,NG-ABEmax/ABE8e
+rs61977311,chr14:g.92464101G>A,TTTAAAAGACCAAATAGAGC,6,ATC,SpRY-ABEmax (might have lower efficiency!)
+rs12590654,chr14:g.92472511G>A,TTTCCATTCCTGAGTTACTT,6,CAC,SpRY-ABEmax (might have lower efficiency!)
+rs117618017,chr15:g.63277703C>T,GCTCGATGGCGATGGTGAAG,6,ACA,SpRY-ABEmax (might have lower efficiency!)
+rs11862962,chr16:g.30898385C>T,TCACTTAAAGTCAGGAGTTC,7,GGG,ABEmax/ABE8e
+rs11862962,chr16:g.30898385C>T,CACTTAAAGTCAGGAGTTCG,6,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs8050588,chr16:g.30926478G>A,ACAGTAGGGATCAGGGAAGC,13,ATGGGT,Sa-ABEmax/ABE8e
+rs8050588,chr16:g.30926478G>A,GGATCAGGGAAGCATGGGTT,6,TCC,SpRY-ABEmax (might have lower efficiency!)
+rs28725459,chr16:g.31121341G>A,GGTCTCAAACTCCTGACCTC,7,AGG,ABEmax/ABE8e
+rs28725459,chr16:g.31121341G>A,CTCAAACTCCTGACCTCAGG,4,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs28725459,chr16:g.31121341G>A,CTGGTCTCAAACTCCTGACC,9,TCAGGT,SaKKH-ABEmax/ABE8e
+rs28725459,chr16:g.31121341G>A,GTCTCAAACTCCTGACCTCA,6,GGTGAT,SaKKH-ABEmax/ABE8e
+rs28725459,chr16:g.31121341G>A,GTCTCAAACTCCTGACCTCA,6,GGT,SpRY-ABEmax (might have lower efficiency!)
+rs7502862,chr17:g.5214511G>A,AGATCACGCCACTGCACTCC,6,AGC,SpG-ABEmax
+rs7502862,chr17:g.5214511G>A,AGATCACGCCACTGCACTCC,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs1724425,chr17:g.45704381C>T,GAGTGAAAATCGACTCTTTC,6,TTC,SpRY-ABEmax (might have lower efficiency!)
+rs34186148,chr17:g.45777289G>A,AGCACTTTCTAGCTCTAAAG,4,TGGGAT,Sa-ABEmax/ABE8e
+rs34186148,chr17:g.45777289G>A,ACCAAAGCACTTTCTAGCTC,9,TAAAGT,SaKKH-ABEmax/ABE8e
+rs34186148,chr17:g.45777289G>A,AGCACTTTCTAGCTCTAAAG,4,TGGGAT,SaKKH-ABEmax/ABE8e
+rs34186148,chr17:g.45777289G>A,AAAGCACTTTCTAGCTCTAA,6,AGT,SpRY-ABEmax (might have lower efficiency!)
+rs713522,chr17:g.45987897T>C,TAGTGCCGGGGGCAGGGGGC,7,AGG,BE3 (R33A)
+rs713522,chr17:g.45987897T>C,AGTGCCGGGGGCAGGGGGCA,6,GGG,BE3 (R33A)
+rs713522,chr17:g.45987897T>C,TAGTGCCGGGGGCAGGGGGC,7,AGG,BE3-hA3A (R128A)
+rs713522,chr17:g.45987897T>C,AGTGCCGGGGGCAGGGGGCA,6,GGG,BE3-hA3A (R128A)
+rs8067056,chr17:g.46006582T>C,TGTAACTGGACTGGCTAACA,6,TGG,BE3 (R33A)
+rs8067056,chr17:g.46006582T>C,TGTAACTGGACTGGCTAACA,6,TGG,BE3 (R33A/K34A) (lower off-targets than BE3 (R33A))
+rs8067056,chr17:g.46006582T>C,TGTAACTGGACTGGCTAACA,6,TGG,BE3-hA3A (R128A)
+rs916888,chr17:g.46785767T>C,ATACCCCAGTCAGAGGGAAG,6,AGG,BE3 (R33A)
+rs916888,chr17:g.46785767T>C,ATACCCCAGTCAGAGGGAAG,6,AGG,BE3-hA3A (R128A)
+rs4588066,chr18:g.43092999G>A,AAGCAAGGTTATAATTTCTA,6,CAC,SpRY-ABEmax (might have lower efficiency!)
+rs1141534,chr19:g.1032690G>A,TGGCAGGGAAGGTGAGGCCC,5,AGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs1141534,chr19:g.1032690G>A,CTGGCAGGGAAGGTGAGGCC,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs3752231,chr19:g.1043639C>T,CCTGCATGTGCCTCTGATCC,6,TCC,SpRY-ABEmax (might have lower efficiency!)
+rs72973584,chr19:g.1046077C>T,CTCCCAGGATCAAACGATCC,6,CCC,SpRY-ABEmax (might have lower efficiency!)
+rs80257887,chr19:g.44516798G>A,GGGTTAGGATTCAACAGCTG,6,TGG,ABEmax/ABE8e
+rs80257887,chr19:g.44516798G>A,GGTTAGGATTCAACAGCTGT,5,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs80257887,chr19:g.44516798G>A,GGGTTAGGATTCAACAGCTG,6,TGG,SpRY-ABEmax (might have lower efficiency!)
+rs75161053,chr19:g.44544863G>A,CAAGGTGATCTCCCACACAG,3,CTGAGT,Sa-ABEmax/ABE8e
+rs75161053,chr19:g.44544863G>A,CCCAAGGTGATCTCCCACAC,5,AGC,SpG-ABEmax
+rs75161053,chr19:g.44544863G>A,ACCCAAGGTGATCTCCCACA,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs112027066,chr19:g.44625792C>T,CTACCAGGTCCCTCTCATGA,6,CAC,SpRY-ABEmax (might have lower efficiency!)
+rs35385129,chr19:g.44658921C>T,TGCTCAATTACAGCAGCTCT,12,GGTGAT,SaKKH-ABEmax/ABE8e
+rs111780744,chr19:g.44663684C>T,TTAGCATCTTGCTTCCATGC,6,CTC,SpRY-ABEmax (might have lower efficiency!)
+rs2289495,chr19:g.44684030T>C,GCCGGACCCCTTCCCTGTTC,3,AGG,Target-AID
+rs62120565,chr19:g.44693757A>G,ACAAAACTAGCTGGGCATGG,7,TGG,BE3 (R33A)
+rs62120565,chr19:g.44693757A>G,ACAAAACTAGCTGGGCATGG,7,TGG,BE3-hA3A (R128A)
+rs112952132,chr19:g.44694790C>T,CTCACACCTGTAATCCCAGC,6,ACT,SpRY-ABEmax (might have lower efficiency!)
+rs2965162,chr19:g.44695666C>T,NANANA,have you thought about using Prime Editing?,There is no Guide for this Variant!,
+rs2965163,chr19:g.44697256G>A,GGCCCAGCACGGAACACTCC,6,ATG,SpRY-ABEmax (might have lower efficiency!)
+rs2965164,chr19:g.44698782C>T,TCTTATAACCTGCATCCTGA,7,TGG,ABEmax/ABE8e
+rs2965164,chr19:g.44698782C>T,TGTGTTCTTATAACCTGCAT,12,CCTGAT,SaKKH-ABEmax/ABE8e
+rs2965164,chr19:g.44698782C>T,CTTATAACCTGCATCCTGAT,6,GGC,SpG-ABEmax
+rs111278137,chr19:g.44711810G>A,AAAATCCCATCTCTATTTTT,9,GAAAAT,SaKKH-ABEmax/ABE8e
+rs111278137,chr19:g.44711810G>A,ATCCCATCTCTATTTTTGAA,6,AAT,SpRY-ABEmax (might have lower efficiency!)
+rs73037426,chr19:g.44719517G>A,CTCGGAGCCTTTGCACTGGC,6,TGT,SpRY-ABEmax (might have lower efficiency!)
+rs111740474,chr19:g.44720227G>A,TTTGTATAGAGATGGGGTTT,6,CAC,SpRY-ABEmax (might have lower efficiency!)
+rs2965109,chr19:g.44722081C>T,CCCTAACTCTTCTTGTCCCT,5,CGC,SpG-ABEmax
+rs2965109,chr19:g.44722081C>T,CCCCTAACTCTTCTTGTCCC,6,TCG,SpRY-ABEmax (might have lower efficiency!)
+rs80307900,chr19:g.44731942T>C,GGGGCTCTATGAGCTTTTAG,7,AGG,BE3 (R33A)
+rs80307900,chr19:g.44731942T>C,GGGCTCTATGAGCTTTTAGA,6,GGG,BE3 (R33A)
+rs80307900,chr19:g.44731942T>C,GGCTCTATGAGCTTTTAGAG,5,GGG,BE3 (R33A)
+rs80307900,chr19:g.44731942T>C,GGGCTCTATGAGCTTTTAGA,6,GGG,BE3 (R33A/K34A) (lower off-targets than BE3 (R33A))
+rs80307900,chr19:g.44731942T>C,GGCTCTATGAGCTTTTAGAG,5,GGG,BE3 (R33A/K34A) (lower off-targets than BE3 (R33A))
+rs80307900,chr19:g.44731942T>C,GGGGCTCTATGAGCTTTTAG,7,AGG,BE3-hA3A (R128A)
+rs80307900,chr19:g.44731942T>C,GGGCTCTATGAGCTTTTAGA,6,GGG,BE3-hA3A (R128A)
+rs80307900,chr19:g.44731942T>C,GGCTCTATGAGCTTTTAGAG,5,GGG,BE3-hA3A (R128A)
+rs80307900,chr19:g.44731942T>C,GGCTCTATGAGCTTTTAGAG,5,GGG,Target-AID
+rs12459810,chr19:g.44746404C>T,AGGCAAGGTTTGGAGGGAGG,5,AGG,ABEmax/ABE8e
+rs12459810,chr19:g.44746404C>T,GGAGGCAAGGTTTGGAGGGA,7,GGAGGT,SaKKH-ABEmax/ABE8e
+rs10401176,chr19:g.44750234C>T,AGACAGGGAAAACTGAGGCC,5,TGC,SpG-ABEmax
+rs10401176,chr19:g.44750234C>T,CAGACAGGGAAAACTGAGGC,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs111677968,chr19:g.44751726C>T,ACTCAGGAGGCTGTGGCATG,5,AGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs62117205,chr19:g.44752009T>C,TGTAAAACCATCACTGGACC,9,TGG,BE3-hA3A (R128A)
+rs140414737,chr19:g.44770815C>T,CCCTTAGGAACGGAGTTTCT,6,CGG,ABEmax/ABE8e
+rs140414737,chr19:g.44770815C>T,CCTTAGGAACGGAGTTTCTC,5,GGC,SpG-ABEmax
+rs140414737,chr19:g.44770815C>T,CCCTTAGGAACGGAGTTTCT,6,CGG,SpRY-ABEmax (might have lower efficiency!)
+rs112450640,chr19:g.44793107G>A,TCATGCCGCTGCACTCCAGC,3,TTGGGT,Sa-ABEmax/ABE8e
+rs112450640,chr19:g.44793107G>A,AGATCATGCCGCTGCACTCC,6,AGC,SpG-ABEmax
+rs112450640,chr19:g.44793107G>A,AGATCATGCCGCTGCACTCC,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs10419669,chr19:g.44794812G>A,ACCTCAGGGCCTTTGCATAA,6,GCT,SpRY-ABEmax (might have lower efficiency!)
+rs148933445,chr19:g.44799247G>A,CAGGAAGATGGTTTAAGCCC,6,AGG,ABEmax/ABE8e
+rs148933445,chr19:g.44799247G>A,AGGAAGATGGTTTAAGCCCA,5,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs148933445,chr19:g.44799247G>A,CAGGAAGATGGTTTAAGCCC,6,AGG,SpRY-ABEmax (might have lower efficiency!)
+rs140824606,chr19:g.44807827G>A,GATTGCACCCACTGCATTCC,7,CGG,ABEmax/ABE8e
+rs140824606,chr19:g.44807827G>A,ATTGCACCCACTGCATTCCC,6,GGC,SpG-ABEmax
+rs140824606,chr19:g.44807827G>A,ATTGCACCCACTGCATTCCC,6,GGC,SpRY-ABEmax (might have lower efficiency!)
+rs1135062,chr19:g.44819487A>G,CGGCGCCGAAGTGGAAGACA,4,TGG,BE3-hA3A (R128A)
+rs1135062,chr19:g.44819487A>G,CGGCGCCGAAGTGGAAGACA,4,TGG,Target-AID
+rs28399637,chr19:g.44820881G>A,CGCCCATGGGCACAGGCTGA,6,CCT,SpRY-ABEmax (might have lower efficiency!)
+rs35741123,chr19:g.44833342T>C,TGCAATCCCAGCTACTAGAG,3,AGG,Target-AID
+rs55840414,chr19:g.44840322G>A,ACTGCAAACATAGCCAGGCG,6,TCG,SpRY-ABEmax (might have lower efficiency!)
+rs4803765,chr19:g.44855191C>T,GCCTCAGCCTCCCAAAGTGC,6,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs4803765,chr19:g.44855191C>T,CTCAGCCTCCCAAAGTGCTG,4,AGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs4803765,chr19:g.44855191C>T,GCCTCAGCCTCCCAAAGTGC,6,TGAGAT,SaKKH-ABEmax/ABE8e
+rs4803765,chr19:g.44855191C>T,GCCTCAGCCTCCCAAAGTGC,6,TGA,SpRY-ABEmax (might have lower efficiency!)
+rs365653,chr19:g.44858389A>G,CCAACACGGGCGATAGAATG,7,AGG,BE3 (R33A)
+rs365653,chr19:g.44858389A>G,CCAACACGGGCGATAGAATG,7,AGG,BE3-hA3A (R128A)
+rs183427010,chr19:g.44863241G>A,GCTGAGGCAGGCTGCTCACT,9,TTGAGT,Sa-ABEmax/ABE8e
+rs183427010,chr19:g.44863241G>A,GCTGAGGCAGGCTGCTCACT,9,TTGAGT,SaKKH-ABEmax/ABE8e
+rs183427010,chr19:g.44863241G>A,GAGGCAGGCTGCTCACTTTG,6,AGT,SpRY-ABEmax (might have lower efficiency!)
+rs112422902,chr19:g.44865946G>A,TGGACAGATCGCCTGAGGTC,4,AGGAGT,Sa-ABEmax/ABE8e
+rs112422902,chr19:g.44865946G>A,GCCGAGATGGACAGATCGCC,11,TGAGGT,SaKKH-ABEmax/ABE8e
+rs112422902,chr19:g.44865946G>A,TGGACAGATCGCCTGAGGTC,4,AGGAGT,SaKKH-ABEmax/ABE8e
+rs112422902,chr19:g.44865946G>A,GATGGACAGATCGCCTGAGG,6,TCA,SpRY-ABEmax (might have lower efficiency!)
+rs41290100,chr19:g.44867684C>T,GGAACACGCCCAGCTCCCAT,6,CTC,SpRY-ABEmax (might have lower efficiency!)
+rs41290102,chr19:g.44867931C>T,CTCTCATCCCAGCTCCCTTC,6,TAC,SpRY-ABEmax (might have lower efficiency!)
+rs71352236,chr19:g.44872156G>A,TGAGTATATCGGGGGTGACC,6,CCT,SpRY-ABEmax (might have lower efficiency!)
+rs34278513,chr19:g.44874887C>T,TTTGGCTCCATGCCTTGGGG,10,CCGGAT,Sa-ABEmax/ABE8e
+rs34278513,chr19:g.44874887C>T,TTTGGCTCCATGCCTTGGGG,10,CCGGAT,SaKKH-ABEmax/ABE8e
+rs34278513,chr19:g.44874887C>T,GCTCCATGCCTTGGGGCCGG,6,ATT,SpRY-ABEmax (might have lower efficiency!)
+rs387976,chr19:g.44875803A>G,AAGAGGCGTCTGTTTTCCCT,7,CGG,BE3 (R33A)
+rs387976,chr19:g.44875803A>G,AGAGGCGTCTGTTTTCCCTC,6,GGG,BE3 (R33A)
+rs387976,chr19:g.44875803A>G,AAGAGGCGTCTGTTTTCCCT,7,CGG,BE3-hA3A (R128A)
+rs387976,chr19:g.44875803A>G,AGAGGCGTCTGTTTTCCCTC,6,GGG,BE3-hA3A (R128A)
+rs41290120,chr19:g.44879418G>A,GTCTCAGGAGGGGAGGGCTG,6,CTC,SpRY-ABEmax (might have lower efficiency!)
+rs113743631,chr19:g.44881443G>A,GCCAAGGCGGGAGGATCACT,4,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs113743631,chr19:g.44881443G>A,AGGCCAAGGCGGGAGGATCA,6,CTT,SpRY-ABEmax (might have lower efficiency!)
+rs79701229,chr19:g.44881674G>A,AAAGCAAGACCGTCTCAAAA,6,AAA,SpRY-ABEmax (might have lower efficiency!)
+rs144261139,chr19:g.44882099C>T,CCCATAGGCAGGGGACATTC,6,TTT,SpRY-ABEmax (might have lower efficiency!)
+rs76692773,chr19:g.44890954C>T,GCTGAAGCATCGCCCCGCCT,6,CTC,SpRY-ABEmax (might have lower efficiency!)
+rs59007384,chr19:g.44893408G>A,ACAGGATTGGGGGGACTGAA,6,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs59007384,chr19:g.44893408G>A,CCCAGACAGGATTGGGGGGA,11,CTGAAT,Sa-ABEmax/ABE8e
+rs59007384,chr19:g.44893408G>A,CCCAGACAGGATTGGGGGGA,11,CTGAAT,SaKKH-ABEmax/ABE8e
+rs59007384,chr19:g.44893408G>A,ACAGGATTGGGGGGACTGAA,6,TGAGGT,SaKKH-ABEmax/ABE8e
+rs59007384,chr19:g.44893408G>A,ACAGGATTGGGGGGACTGAA,6,TGA,SpRY-ABEmax (might have lower efficiency!)
+rs35568738,chr19:g.44899461G>A,CCCTTAATACCTGGGACTAC,7,AGG,ABEmax/ABE8e
+rs35568738,chr19:g.44899461G>A,CCCCCTTAATACCTGGGACT,9,ACAGGT,SaKKH-ABEmax/ABE8e
+rs35568738,chr19:g.44899461G>A,CCTTAATACCTGGGACTACA,6,GGT,SpRY-ABEmax (might have lower efficiency!)
+rs117264457,chr19:g.44901175G>A,ACTTACTAATTCTCATGTGT,5,TGC,SpG-ABEmax
+rs117264457,chr19:g.44901175G>A,CACTTACTAATTCTCATGTG,6,TTG,SpRY-ABEmax (might have lower efficiency!)
+rs10119,chr19:g.44903416G>A,TTCCAGAATTGAGGGGCACG,5,CAGGAT,Sa-ABEmax/ABE8e
+rs10119,chr19:g.44903416G>A,ATTCCAGAATTGAGGGGCAC,6,GCA,SpRY-ABEmax (might have lower efficiency!)
+rs449647,chr19:g.44905307A>G,TCAGGAGCTTGAGACCAGCC,8,TGG,BE3-hA3A (R128A)
+rs7412,chr19:g.44908822C>T,CAGGCACTTCTGCAGGTCAT,6,CGG,ABEmax/ABE8e
+rs7412,chr19:g.44908822C>T,AGGCACTTCTGCAGGTCATC,5,GGC,SpG-ABEmax
+rs7412,chr19:g.44908822C>T,CAGGCACTTCTGCAGGTCAT,6,CGG,SpRY-ABEmax (might have lower efficiency!)
+rs75627662,chr19:g.44910319C>T,GAAAAAAAATAAAAATAGCT,11,TAGAAT,Sa-ABEmax/ABE8e
+rs75627662,chr19:g.44910319C>T,GAAAAAAAATAAAAATAGCT,11,TAGAAT,SaKKH-ABEmax/ABE8e
+rs75627662,chr19:g.44910319C>T,AAAATAAAAATAGCTTAGAA,6,TAA,SpRY-ABEmax (might have lower efficiency!)
+rs72654437,chr19:g.44912842G>A,TTGTGAGGTCTGGGAAGCAG,6,ACA,SpRY-ABEmax (might have lower efficiency!)
+rs59325138,chr19:g.44913034C>T,CCCCCACAACCACGTGTCAG,6,CCT,SpRY-ABEmax (might have lower efficiency!)
+rs72654445,chr19:g.44913943G>A,AGATGACCACAGGGACAGGA,6,CAA,SpRY-ABEmax (might have lower efficiency!)
+rs12691088,chr19:g.44915229G>A,TGGGTAGGGGGCTCTGGGAG,6,AGG,ABEmax/ABE8e
+rs12691088,chr19:g.44915229G>A,GCTGGGTAGGGGGCTCTGGG,8,AGAGGT,SaKKH-ABEmax/ABE8e
+rs12691088,chr19:g.44915229G>A,TGGGTAGGGGGCTCTGGGAG,6,AGG,SpRY-ABEmax (might have lower efficiency!)
+rs3925681,chr19:g.44917843G>A,TGGTACATTCCTGTAGTCCT,5,AGC,SpG-ABEmax
+rs3925681,chr19:g.44917843G>A,GTGGTACATTCCTGTAGTCC,6,TAG,SpRY-ABEmax (might have lower efficiency!)
+rs150966173,chr19:g.44917947C>T,NANANA,have you thought about using Prime Editing?,There is no Guide for this Variant!,
+rs144311893,chr19:g.44920687C>T,GTGGCACCATCTTGGCTCAC,6,TGC,SpG-ABEmax
+rs144311893,chr19:g.44920687C>T,GTGGCACCATCTTGGCTCAC,6,TGC,SpRY-ABEmax (might have lower efficiency!)
+rs139136389,chr19:g.44923879C>T,CTCAACCTCCCAAGTAGCTG,5,AGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs4803771,chr19:g.44924391C>T,CATGAATAGGCTGAAGTTTG,6,TTC,SpRY-ABEmax (might have lower efficiency!)
+rs117664574,chr19:g.44924522C>T,GGTCAAGTGGATGTTGGAGG,5,TGG,ABEmax/ABE8e
+rs117664574,chr19:g.44924522C>T,CAAGGGGTCAAGTGGATGTT,10,GGAGGT,SaKKH-ABEmax/ABE8e
+rs60049679,chr19:g.44926451G>A,TGAGGGAGGGATGAGATCAC,7,AGG,ABEmax/ABE8e
+rs60049679,chr19:g.44926451G>A,GAGGGAGGGATGAGATCACA,6,GGG,ABEmax/ABE8e
+rs60049679,chr19:g.44926451G>A,ATGAGGGAGGGATGAGATCA,8,CAGGGT,Sa-ABEmax/ABE8e
+rs60049679,chr19:g.44926451G>A,ATGAGGGAGGGATGAGATCA,8,CAGGGT,SaKKH-ABEmax/ABE8e
+rs60049679,chr19:g.44926451G>A,GAGGGAGGGATGAGATCACA,6,GGG,SpRY-ABEmax (might have lower efficiency!)
+rs73033507,chr19:g.44928146C>T,ACGGCACCCAGCCCAAGACC,6,ATC,SpRY-ABEmax (might have lower efficiency!)
+rs7260330,chr19:g.44932959A>G,GTTCTATCTTTAATGTTTTG,8,AGG,BE3-hA3A (R128A)
+rs7254133,chr19:g.44935297C>T,CCACCACGTCCTGCTAAATT,6,TAC,SpRY-ABEmax (might have lower efficiency!)
+rs4263041,chr19:g.44935386A>G,TTTCACCACGTTGGTCAGGT,9,TGG,BE3-hA3A (R128A)
+rs12983572,chr19:g.44953575G>A,GGTAAATCACTCACCTTCTG,6,CAC,SpRY-ABEmax (might have lower efficiency!)
+rs146390218,chr19:g.44975095A>G,CTCTCACGCGATGTGGCCTT,7,GGG,BE3 (R33A)
+rs146390218,chr19:g.44975095A>G,TCTCTCACGCGATGTGGCCT,8,TGG,BE3-hA3A (R128A)
+rs146390218,chr19:g.44975095A>G,CTCTCACGCGATGTGGCCTT,7,GGG,BE3-hA3A (R128A)
+rs145729706,chr19:g.44980464G>A,AGATCATGCCACTGTACTCT,6,AGC,SpG-ABEmax
+rs145729706,chr19:g.44980464G>A,AGATCATGCCACTGTACTCT,6,AGC,SpRY-ABEmax (might have lower efficiency!)
+rs117261169,chr19:g.44987774C>T,NANANA,have you thought about using Prime Editing?,There is no Guide for this Variant!,
+rs117612135,chr19:g.45001269C>T,AGGGATTGGGCAGGCGTCGC,5,TGC,SpG-ABEmax
+rs117612135,chr19:g.45001269C>T,GAGGGATTGGGCAGGCGTCG,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs874743,chr19:g.45009978G>A,CTAAGATACTTAGCAGTGCT,6,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs874743,chr19:g.45009978G>A,CTAAGATACTTAGCAGTGCT,6,TGA,SpRY-ABEmax (might have lower efficiency!)
+rs35912475,chr19:g.45019474C>T,ATTATAGCTACAGAGGAGCT,4,TATGAT,SaKKH-ABEmax/ABE8e
+rs35912475,chr19:g.45019474C>T,AGATTATAGCTACAGAGGAG,6,CTT,SpRY-ABEmax (might have lower efficiency!)
+rs4803791,chr19:g.45020325G>A,TTAAATGATCCTCCCACCTC,5,AGC,SpG-ABEmax
+rs4803791,chr19:g.45020325G>A,CTTAAATGATCCTCCCACCT,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs34583389,chr19:g.45027093C>T,ACACCCGGCTAATTTTTTTT,3,TTGGAT,Sa-ABEmax/ABE8e
+rs34583389,chr19:g.45027093C>T,ACGACACCCGGCTAATTTTT,6,TTT,SpRY-ABEmax (might have lower efficiency!)
+rs186313460,chr19:g.45029433C>T,GACCAACTGTCTTTTTTTTT,6,TAA,SpRY-ABEmax (might have lower efficiency!)
+rs34827707,chr19:g.45038524G>A,AGCGCGAAGCTGTGTCTCAA,8,AAAAAT,SaKKH-ABEmax/ABE8e
+rs34827707,chr19:g.45038524G>A,CGCGAAGCTGTGTCTCAAAA,6,AAA,SpRY-ABEmax (might have lower efficiency!)
+rs112481437,chr19:g.45045877G>A,TGGAGGAATGGTGCAGAGGA,7,AGG,ABEmax/ABE8e
+rs112481437,chr19:g.45045877G>A,GGAGGAATGGTGCAGAGGAA,6,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs112481437,chr19:g.45045877G>A,GGAGGAATGGTGCAGAGGAA,6,GGA,SpRY-ABEmax (might have lower efficiency!)
+rs147188206,chr19:g.45049329T>C,AGGGAGCCGGGTGCGCTGTG,8,TGG,BE3-hA3A (R128A)
+rs143161810,chr19:g.45063572G>A,TCCTAAGTAGCTGGAATTAC,5,AGG,ABEmax/ABE8e
+rs143161810,chr19:g.45063572G>A,CCTCCTAAGTAGCTGGAATT,7,ACAGGT,SaKKH-ABEmax/ABE8e
+rs143161810,chr19:g.45063572G>A,CTCCTAAGTAGCTGGAATTA,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs139995984,chr19:g.45071224G>A,GTGTCAGCCCAGCATGTCCC,6,ACA,SpRY-ABEmax (might have lower efficiency!)
+rs8100183,chr19:g.45081434C>T,CTCACTCTTGTCACCCAGGC,13,TGGAGT,Sa-ABEmax/ABE8e
+rs8100183,chr19:g.45081434C>T,TTGTCACCCAGGCTGGAGTA,6,CAG,SpRY-ABEmax (might have lower efficiency!)
+rs118062675,chr19:g.45086866G>A,TTTTCAAGATGAGTCTTGCT,6,CTG,SpRY-ABEmax (might have lower efficiency!)
+rs12461065,chr19:g.45102050C>T,CAAGCAAGCCAAGGACACGC,7,TGG,ABEmax/ABE8e
+rs12461065,chr19:g.45102050C>T,AAGCAAGCCAAGGACACGCT,6,GGC,SpG-ABEmax
+rs76271385,chr19:g.45109604G>A,GCTGAAAATGGCAGAAGCCA,7,GGG,ABEmax/ABE8e
+rs76271385,chr19:g.45109604G>A,CTGAAAATGGCAGAAGCCAG,6,GGC,SpG-ABEmax
+rs76271385,chr19:g.45109604G>A,CTGAAAATGGCAGAAGCCAG,6,GGC,SpRY-ABEmax (might have lower efficiency!)
+rs146723120,chr19:g.45144962C>T,GCCCGAAGCGCAGCACGCTG,7,CGG,ABEmax/ABE8e
+rs149553138,chr19:g.45169220G>A,GATCCACCCCAGCACTTACC,6,AGT,SpRY-ABEmax (might have lower efficiency!)
+rs76971643,chr19:g.45169864G>A,AACACATCTGTGTCCCCACT,6,CGC,SpG-ABEmax
+rs76971643,chr19:g.45169864G>A,AACACATCTGTGTCCCCACT,6,CGC,SpRY-ABEmax (might have lower efficiency!)
+rs111243475,chr19:g.45188312C>T,CAGTTGCAGTGGCTCATGCC,8,TATAAT,SaKKH-ABEmax/ABE8e
+rs111243475,chr19:g.45188312C>T,GTTGCAGTGGCTCATGCCTA,6,TAA,SpRY-ABEmax (might have lower efficiency!)
+rs185181700,chr19:g.45203217G>A,CAAGGCACCAGAACTTGCCC,12,AGAAAT,SaKKH-ABEmax/ABE8e
+rs185181700,chr19:g.45203217G>A,ACCAGAACTTGCCCAGAAAT,6,TGC,SpG-ABEmax
+rs185181700,chr19:g.45203217G>A,ACCAGAACTTGCCCAGAAAT,6,TGC,SpRY-ABEmax (might have lower efficiency!)
+rs10415983,chr19:g.45208340C>T,TATGAACGATGGCACCTGAC,6,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs10415983,chr19:g.45208340C>T,GGTATGAACGATGGCACCTG,8,ACTGAT,SaKKH-ABEmax/ABE8e
+rs10415983,chr19:g.45208340C>T,TATGAACGATGGCACCTGAC,6,TGA,SpRY-ABEmax (might have lower efficiency!)
+rs10415392,chr19:g.45216532C>T,GTGCAATCTCCGCTCACTGT,6,AAC,SpRY-ABEmax (might have lower efficiency!)
+rs12461144,chr19:g.45220448C>T,TCTTGCTCTGTCACCCAGGC,13,TGGAGT,Sa-ABEmax/ABE8e
+rs12461144,chr19:g.45220448C>T,CTGTCACCCAGGCTGGAGTG,6,CAA,SpRY-ABEmax (might have lower efficiency!)
+rs346751,chr19:g.45231175T>C,GTAGCACTGACTGATTTCTG,7,TGG,BE3 (R33A)
+rs346751,chr19:g.45231175T>C,GTAGCACTGACTGATTTCTG,7,TGG,BE3-hA3A (R128A)
+rs346751,chr19:g.45231175T>C,CACTGACTGATTTCTGTGGC,3,TGG,Target-AID
+rs11673093,chr19:g.45238836G>A,GGCCCAACCCAGCCGGAAGG,7,GGG,ABEmax/ABE8e
+rs11673093,chr19:g.45238836G>A,GCCCAACCCAGCCGGAAGGG,6,GGC,SpG-ABEmax
+rs11673093,chr19:g.45238836G>A,GCCCAACCCAGCCGGAAGGG,6,GGC,SpRY-ABEmax (might have lower efficiency!)
+rs345421,chr19:g.45266491G>A,GATGGGGAGGAGGGGACAGG,8,AGGAGT,Sa-ABEmax/ABE8e
+rs345421,chr19:g.45266491G>A,GATGGGGAGGAGGGGACAGG,8,AGGAGT,SaKKH-ABEmax/ABE8e
+rs345421,chr19:g.45266491G>A,TGGGGAGGAGGGGACAGGAG,6,GAG,SpRY-ABEmax (might have lower efficiency!)
+rs183442275,chr19:g.45303295C>T,TCGGGATGTAATAACTTAAA,6,AAC,SpRY-ABEmax (might have lower efficiency!)
+rs144645090,chr19:g.45314859G>A,GGTGTATGCCACCACTCCTG,6,GCT,SpRY-ABEmax (might have lower efficiency!)
+rs12973246,chr19:g.45332946G>A,TGCCGAGACCGAGAAAGAGA,6,ACT,SpRY-ABEmax (might have lower efficiency!)
+rs10423015,chr19:g.45451788G>A,CACTTATGTATCTGGGTGTA,6,TGG,ABEmax/ABE8e
+rs10423015,chr19:g.45451788G>A,ACTTATGTATCTGGGTGTAT,5,GGG,ABEmax/ABE8e
+rs10423015,chr19:g.45451788G>A,CTTATGTATCTGGGTGTATG,4,GGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs10423015,chr19:g.45451788G>A,ACTTATGTATCTGGGTGTAT,5,GGGAGT,Sa-ABEmax/ABE8e
+rs10423015,chr19:g.45451788G>A,CACTTATGTATCTGGGTGTA,6,TGG,SpRY-ABEmax (might have lower efficiency!)
+rs2830489,chr21:g.26775872C>T,TTTATCAAGTGTAATAGCCA,4,TGA,"NG-ABEmax/ABE8e, VRQR-ABEmax"
+rs2830489,chr21:g.26775872C>T,TTTTATCAAGTGTAATAGCC,5,ATGAGT,Sa-ABEmax/ABE8e
+rs2830489,chr21:g.26775872C>T,TTTTTATCAAGTGTAATAGC,6,CAT,SpRY-ABEmax (might have lower efficiency!)

data/variant_inventory/Copy of variant_list_August10th2022.csv

@@ -0,0 +1,339 @@
+SNP,D1,D2,GENE
+rs147288664,PD,,HRNR
+rs12726330,PD,,SLC50A1
+rs76763715,PD,,GBA
+rs75548401,PD,,GBA
+rs71630614,PD,,LMNA
+rs4575098,AD,,
+rs12118655,PD,,
+rs7532422,AD,,
+rs7537669,AD,,CR1L
+rs143080277,AD,,NCK2
+rs55636820,AD,,BIN1
+rs1060743,AD,,BIN1
+rs11693422,AD,,BIN1
+rs11694743,AD,,BIN1
+rs10929006,AD,,BIN1
+rs4663096,AD,,BIN1
+rs13032148,AD,,
+rs7594230,AD,,LOC105373605
+rs58682665,AD,,LOC105373605
+rs35968837,AD,,LOC105373605
+rs4663105,AD,LBD,LOC105373605
+rs57891859,PD,,TMEM163
+rs2390669,PD,,STK39
+rs6705834,AD,,INPP5D
+rs4488803,PD,,
+rs73177394,PD,,
+rs111716486,PD,,MCCC1
+rs45486093,PD,,GAK
+rs3775121,PD,,GAK
+rs6599388,PD,LBD,TMEM175
+rs6599389,PD,,TMEM175
+rs3733344,PD,,TMEM175
+rs34311866,PD,,TMEM175
+rs4690229,PD,,
+rs17783233,PD,,SLC26A1
+rs4373155,AD,,
+rs35519415,PD,,BST1
+rs9291637,PD,,BST1
+rs12640185,PD,,SCARB2
+rs7654472,PD,,
+rs6811535,PD,,
+rs1430961,PD,,LOC105377329
+rs72657707,PD,,LOC105377329
+rs114088559,PD,,LOC105377329
+rs3933594,PD,,LOC105377329
+rs356162,PD,,SNCA
+rs72503734,PD,,SNCA
+rs3775434,PD,,SNCA
+rs2737029,PD,,SNCA
+rs6841352,LBD,,
+rs10516853,PD,,MMRN1
+rs183161418,PD,,CCSER1
+rs10052649,PD,,
+rs10514906,PD,,SMIM15-AS1
+rs1967688,AD,,
+rs1980493,FTD,,
+rs3806157,AD,,
+rs9268544,AD,,
+rs9268840,FTD,,
+rs482044,AD,,
+rs149839148,AD,,
+rs33915496,AD,,
+rs510205,AD,,
+rs9275111,AD,,
+rs2858331,AD,,
+rs3957148,AD,,
+rs9275614,AD,,LOC102725019
+rs79485747,AD,,
+rs143202663,AD,,LOC101929555
+rs143332484,AD,,
+rs13207334,AD,,
+rs9395259,AD,,
+rs6931011,AD,,CD2AP
+rs1637190,PD,,LOC101927890
+rs1987580,AD,,AZGP1
+rs3735242,AD,,GPC2
+rs7782051,AD,,CASTOR3
+rs2906657,AD,,PILRA
+rs3935067,AD,,
+rs11767557,AD,,EPHA1-AS1
+rs620490,PD,,LOC105379297
+rs755951,AD,,PTK2B
+rs2565048,AD,,CHRNA2
+rs7341557,AD,,EPHX2
+rs2640724,AD,,EPHX2
+rs7831810,AD,,EPHX2
+rs9331950,AD,,
+rs4732729,AD,,CLU
+rs485902,AD,,SCARA3
+rs35112405,AD,,SCARA3
+rs112136718,PD,,EPPK1
+rs148703839,ALS,,MOB3B
+rs78752429,ALS,,MOB3B
+rs12552327,ALS,,MOB3B
+rs4879515,ALS,,MOB3B
+rs139185008,ALS,,MOB3B
+rs2484314,ALS,,MOB3B
+rs147599399,ALS,,LOC107987057
+rs17696570,ALS,,C9orf72
+rs3849944,ALS,,C9orf72
+rs10812619,ALS,,C9orf72
+rs11795154,ALS,,
+rs34555425,ALS,,
+rs7854467,ALS,,
+rs117204439,ALS,,
+rs7912495,AD,,
+rs1171832,AD,,CCDC6
+rs188789342,PD,,
+rs117896735,PD,,INPP5F
+rs202122669,PD,,CYP2R1
+rs11039212,AD,,SPI1
+rs10769263,AD,,SPI1
+rs1286170,AD,,MS4A3
+rs580064,AD,,
+rs55661415,AD,,MS4A6A
+rs652303,AD,,MS4A4E
+rs2044981,AD,,MS4A4A
+rs55777218,AD,,MS4A4A
+rs7945487,AD,,
+rs4944549,AD,,
+rs572979,AD,,
+rs67598967,AD,,
+rs7113976,AD,,
+rs11603136,AD,,
+rs11218343,AD,,SORL1
+rs11223616,PD,,IGSF9B
+rs10444323,PD,,IGSF9B
+rs564123,PD,,IGSF9B
+rs539604877,PD,,C12orf40
+rs893136227,PD,,SLC2A13
+rs1491942,PD,,LRRK2
+rs28903073,PD,,LRRK2
+rs34637584,PD,,LRRK2
+rs75505347,PD,,MUC19
+rs1002038473,PD,,CNTN1
+rs764179564,PD,,PDZRN4
+rs117027576,ALS,,SDR9C7
+rs113247976,ALS,,KIF5A
+rs116900480,ALS,,
+rs41292019,ALS,,TBK1
+rs73124200,ALS,,
+rs3783448,AD,,PSMC6
+rs12589020,AD,,LOC105370500
+rs147767029,AD,,FERMT2
+rs61977311,AD,,SLC24A4
+rs12590654,AD,,SLC24A4
+rs3098199,AD,,USP50
+rs7168776,AD,,
+rs117618017,AD,,APH1B
+rs11862962,PD,,CTF1
+rs8050588,PD,,FBXL19
+rs12917722,PD,,FBXL19
+rs28725459,AD,,KAT8
+rs7502862,AD,,
+rs61572747,PD,,
+rs1724425,PD,,LINC02210-CRHR1
+rs7207400,PD,,LINC02210-CRHR1
+rs34186148,PD,,LINC02210-CRHR1
+rs3935637,PD,,MAPT-AS1
+rs9898399,PD,,MAPT-AS1
+rs713522,PD,,MAPT
+rs8067056,PD,,MAPT
+rs7225002,PD,,KANSL1
+rs916888,PD,,
+rs4588066,PD,,RIT2
+rs1141534,AD,,CNN2
+rs3764645,AD,,ABCA7
+rs3752231,AD,,ABCA7
+rs72973584,AD,,ABCA7
+rs12975883,ALS,,UNC13A
+rs80257887,AD,,CEACAM20
+rs75161053,AD,,CEACAM22P
+rs144908353,AD,,
+rs112027066,AD,,IGSF23
+rs203709,AD,,
+rs35385129,AD,,
+rs111780744,AD,,
+rs2289495,AD,,
+rs62120565,AD,,CEACAM16-AS1
+rs112952132,AD,,CEACAM16-AS1
+rs2965162,AD,,CEACAM16-AS1
+rs2965163,AD,,
+rs2965164,AD,,
+rs111278137,AD,,CEACAM16-AS1
+rs4600571,AD,,CEACAM16-AS1
+rs73037426,AD,,CEACAM16-AS1
+rs111740474,AD,,CEACAM16-AS1
+rs2965109,AD,,CEACAM16-AS1
+rs150820726,AD,,CEACAM16-AS1
+rs80307900,AD,,
+rs2965102,AD,,
+rs200046586,AD,,
+rs12459810,AD,,BCL3
+rs2965169,AD,,BCL3
+rs10401176,AD,,BCL3
+rs8103315,AD,,BCL3
+rs111677968,AD,,BCL3
+rs62117205,AD,,BCL3
+rs140414737,AD,,
+rs112450640,AD,,CBLC
+rs2889414,AD,,CBLC
+rs10419669,AD,,CBLC
+rs28534944,AD,,CBLC
+rs139576276,AD,,CBLC
+rs148933445,AD,,CBLC
+rs2965112,AD,,CBLC
+rs111794050,AD,,CBLC
+rs140824606,AD,,BCAM
+rs1135062,AD,,BCAM
+rs28399637,AD,LBD,BCAM
+rs34978331,AD,,
+rs56394238,AD,,
+rs35741123,AD,,
+rs1466435,AD,,
+rs55840414,AD,,
+rs111371860,AD,,
+rs41289512,AD,LBD,NECTIN2
+rs7255063,AD,,NECTIN2
+rs10421035,AD,,NECTIN2
+rs35396326,AD,LBD,NECTIN2
+rs4803765,AD,,NECTIN2
+rs365653,AD,,NECTIN2
+rs417193,AD,,NECTIN2
+rs12978931,AD,,NECTIN2
+rs138607350,AD,,NECTIN2
+rs183427010,AD,,NECTIN2
+rs112422902,AD,,NECTIN2
+rs41290100,AD,,NECTIN2
+rs41290102,AD,,NECTIN2
+rs71352236,AD,,NECTIN2
+rs34278513,AD,,NECTIN2
+rs387976,AD,,NECTIN2
+rs73050293,AD,,NECTIN2
+rs11668861,AD,,NECTIN2
+rs41290120,AD,,NECTIN2
+rs11673139,AD,,NECTIN2
+rs113743631,AD,,NECTIN2
+rs79701229,AD,,NECTIN2
+rs144261139,AD,,NECTIN2
+rs283813,AD,,NECTIN2
+rs76692773,AD,,TOMM40
+rs59007384,LBD,,TOMM40
+rs35568738,AD,,TOMM40
+rs117264457,AD,,TOMM40
+rs1038026,AD,LBD,TOMM40
+rs10119,LBD,,TOMM40
+rs449647,AD,,APOE
+rs769446,AD,,APOE
+rs7412,AD,,APOE
+rs429358,AD,,APOE
+rs537741299,LBD,,APOE
+rs75627662,AD,,
+rs72654437,AD,,APOC1
+rs59325138,AD,,APOC1
+rs72654445,AD,,APOC1
+rs12691088,AD,LBD,APOC1
+rs3925681,AD,LBD,APOC1
+rs150966173,AD,LBD,APOC1
+rs1064725,AD,,APOC1
+rs144311893,AD,,
+rs111789331,AD,,
+rs139136389,AD,,
+rs4803771,AD,,
+rs117664574,AD,,
+rs60049679,AD,LBD,APOC1P1
+rs73033507,AD,,APOC1P1
+rs7260330,AD,,
+rs7254133,AD,,
+rs141441332,AD,,
+rs4263041,AD,,
+rs12983572,AD,,CLPTM1
+rs8102895,AD,,CLPTM1
+rs2239375,AD,,CLPTM1
+rs75178253,AD,,CLPTM1
+rs145639166,AD,,CLPTM1
+rs73558179,AD,,CLPTM1
+rs146390218,AD,,CLPTM1
+rs145729706,AD,,CLPTM1
+rs117261169,AD,,CLPTM1
+rs12459272,AD,,
+rs35577563,AD,,RELB
+rs117612135,AD,,RELB
+rs874743,AD,,RELB
+rs145887105,AD,,
+rs35912475,AD,,RELB
+rs4803791,AD,,RELB
+rs142380271,AD,,RELB
+rs34583389,AD,,RELB
+rs186313460,AD,,RELB
+rs34827707,AD,,
+rs76856627,AD,,CLASRP
+rs112481437,AD,,CLASRP
+rs147188206,AD,,CLASRP
+rs143161810,AD,,CLASRP
+rs139995984,AD,,
+rs7251911,AD,,GEMIN7
+rs8100183,AD,,GEMIN7
+rs118062675,AD,,
+rs12461065,AD,,PPP1R37
+rs76271385,AD,,PPP1R37
+rs145903417,AD,,PPP1R37
+rs79018068,AD,,PPP1R37
+rs75463276,AD,,PPP1R37
+rs146723120,AD,,PPP1R37
+rs78073763,AD,,PPP1R37
+rs1005451,AD,,
+rs192775394,AD,,TRAPPC6A
+rs149553138,AD,,TRAPPC6A
+rs76971643,AD,,TRAPPC6A
+rs59839536,AD,,BLOC1S3
+rs12460985,AD,,BLOC1S3
+rs62118471,AD,,BLOC1S3
+rs111243475,AD,,BLOC1S3
+rs149495476,AD,,BLOC1S3
+rs73566243,AD,,BLOC1S3
+rs117783785,AD,,BLOC1S3
+rs2627642,AD,,BLOC1S3
+rs185181700,AD,,
+rs620807,AD,,
+rs10415983,AD,,
+rs11667509,AD,,EXOC3L2
+rs10415392,AD,,EXOC3L2
+rs12461144,AD,,EXOC3L2
+rs346758,AD,,EXOC3L2
+rs112759099,AD,,EXOC3L2
+rs346751,AD,,EXOC3L2
+rs346750,AD,,EXOC3L2
+rs11673093,AD,,EXOC3L2
+rs345421,AD,,MARK4
+rs183442275,AD,,MARK4
+rs144645090,AD,,CKM
+rs12973246,AD,,
+rs77988534,AD,,KLC3
+rs10423015,AD,,ERCC1
+rs3865444,AD,,CD33
+rs6127744,AD,,CASS4
+rs2830489,AD,,
+rs75087725,ALS,,CFAP410

pytest1.py

@@ -0,0 +1,2 @@
+import forecast_be
+forecast_be.predict_batch_fasta('rs482044bystander_ABE8e_meanBE-DICT.fasta',editor='ABE',output_path='rs482044bystander_ABE8e_meanBE-DICT.fasta_ABE_rs482044bystander_ABE8e_meanBE-DICT.fasta.csv',mean=None,std=None)

requirements.txt

@@ -0,0 +1,7 @@
+streamlit
+pandas
+numpy
+streamlit-nested-layout
+streamlit-on-Hover-tabs
+streamlit-aggrid
+streamlit-drawable-canvas